Ec-00_000820.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_000820.1
Unique NameEc-00_000820.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length239
Homology
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BLAST of Ec-00_000820.1 vs. uniprot
Match: D7FIU6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU6_ECTSI)

HSP 1 Score: 478 bits (1231), Expect = 9.190e-171
Identity = 238/238 (100.00%), Postives = 238/238 (100.00%), Query Frame = 1 
Query:    1 MGRYVVSCQVFGKMQKSKKKADLDKAAHIKMLARIYPGLRIAHVDEKYGEFYSVLSKNAGNGTDDMEEEYRVRLPGQILVGEGKPNNQNHAVIFTRGEAIQAIDMNQDAALEDAIKIRQVMEEFNFAEGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPDIFDRMSAITMGGVSKACKGIHLSEDIFAGFNYVLRGGEATQADYIQVMST 714
            MGRYVVSCQVFGKMQKSKKKADLDKAAHIKMLARIYPGLRIAHVDEKYGEFYSVLSKNAGNGTDDMEEEYRVRLPGQILVGEGKPNNQNHAVIFTRGEAIQAIDMNQDAALEDAIKIRQVMEEFNFAEGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPDIFDRMSAITMGGVSKACKGIHLSEDIFAGFNYVLRGGEATQADYIQVMST
Sbjct:    1 MGRYVVSCQVFGKMQKSKKKADLDKAAHIKMLARIYPGLRIAHVDEKYGEFYSVLSKNAGNGTDDMEEEYRVRLPGQILVGEGKPNNQNHAVIFTRGEAIQAIDMNQDAALEDAIKIRQVMEEFNFAEGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPDIFDRMSAITMGGVSKACKGIHLSEDIFAGFNYVLRGGEATQADYIQVMST 238
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BLAST of Ec-00_000820.1 vs. uniprot
Match: D7FXN7_ECTSI (1,3-beta-glucan synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXN7_ECTSI)

HSP 1 Score: 281 bits (719), Expect = 1.840e-83
Identity = 142/233 (60.94%), Postives = 182/233 (78.11%), Query Frame = 1 
Query:   10 YVVSCQVFGKMQKSKKKADLDKAAHIKMLARIYPGLRIAHVDE-KYGEFYSVLSKNAGNGTDDMEEEYRVRLPGQILVGEGKPNNQNHAVIFTRGEAIQAIDMNQDAALEDAIKIRQVMEEFNFAEGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPDIFDRMSAITMGGVSKACKGIHLSEDIFAGFNYVLRGGEATQADYIQV 705
            YVVSCQ   K+ +S K  D  KA  +++L  ++P L++A+V+  K G  +SVL +        + ++Y V LPG IL+GEGKPNNQNHA+IFTRGEA+QAIDMNQD +LEDA+K RQ++ EF+F  GG     N  RIVGFRE VFTHDVS++ANFFSLQEL+FV++ QR LD PL VRFHYGHPD+FD++SA+T+GG+SKA KGI+LSEDIF GFN++LRGG+ATQA+YIQV
Sbjct: 1210 YVVSCQQHAKLLRSGKDEDRAKAKSVELLMEMHPSLKVAYVESGKDGRHHSVLIRY-DEARSRIVKQYEVELPGPILLGEGKPNNQNHAIIFTRGEAVQAIDMNQDGSLEDALKARQLLGEFDFNGGG-----NHARIVGFREFVFTHDVSSIANFFSLQELSFVTSIQRFLDKPLAVRFHYGHPDLFDKVSAMTLGGISKASKGINLSEDIFGGFNFILRGGKATQAEYIQV 1436
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BLAST of Ec-00_000820.1 vs. uniprot
Match: A0A835ZD62_9STRA (1,3-beta-glucan synthase component-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD62_9STRA)

HSP 1 Score: 258 bits (659), Expect = 1.310e-78
Identity = 125/176 (71.02%), Postives = 147/176 (83.52%), Query Frame = 1 
Query:  196 MEEEYRVRLPGQILVGEGKPNNQNHAVIFTRGEAIQAIDMNQDAALEDAIKIRQVMEEFNFAE------GGTGR-GRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPDIFDRMSAITMGGVSKACKGIHLSEDIFAGFNYVLRGGEATQADYIQ 702
            M EEYRV LPGQILVGEGKPNNQNHA+IFTRGEAIQAIDMNQD +LE+A+K R++++EF F E      GG  R   N+GRIVGFREHVFTH+VS++ANFFSLQE  FV+ATQR LD PL +RFHYGHPD+FD+ +AIT GG+S+  KGIHLSEDIFAGF +VLRGG ++Q DYIQ
Sbjct:    1 MLEEYRVELPGQILVGEGKPNNQNHAIIFTRGEAIQAIDMNQDGSLEEALKQREMLQEFGFGERRIGLLGGRSREAPNLGRIVGFREHVFTHNVSSIANFFSLQETGFVTATQRVLDEPLAIRFHYGHPDVFDKTTAITQGGISRPSKGIHLSEDIFAGFYWVLRGGRSSQLDYIQ 176
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BLAST of Ec-00_000820.1 vs. uniprot
Match: A0A6H5L5X7_9PHAE (GT48 protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5X7_9PHAE)

HSP 1 Score: 250 bits (639), Expect = 2.660e-74
Identity = 128/215 (59.53%), Postives = 164/215 (76.28%), Query Frame = 1 
Query:   10 YVVSCQVFGKMQKSKKKADLDKAAHIKMLARIYPGLRIAHVDE-KYGEFYSVLSKNAGNGTDDMEEEYRVRLPGQILVGEGKPNNQNHAVIFTRGEAIQAIDMNQDAALEDAIKIRQVMEEFNFAEGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPDIFDRMSAITMGGVSKACKGIHLSEDIFAG 651
            YVVSCQ   K+ +S K  D  KA  +++L  ++P L++A+V+  K G  +SVL +        + ++Y V LPG IL+GEGKPNNQNHA+IFTRGEA+QAIDMNQD +LEDA+K RQ++ EF+F  GG     N  RIVGFRE VFTHDVS++ANFFSLQEL+FV++ QR LD PL VRFHYGHPD+FD++SA+T+GG+SKA KGI+LSEDIF G
Sbjct:  636 YVVSCQQHAKLLRSGKDEDRAKAKSVELLMEMHPSLKVAYVESGKDGRHHSVLIRY-DEARSRIVKQYEVELPGPILLGEGKPNNQNHAIIFTRGEAVQAIDMNQDGSLEDALKARQLLGEFDFNGGG-----NHARIVGFREFVFTHDVSSIANFFSLQELSFVTSIQRFLDKPLAVRFHYGHPDLFDKVSAMTLGGISKASKGINLSEDIFGG 844
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BLAST of Ec-00_000820.1 vs. uniprot
Match: A0A836C8X3_9STRA (1,3-beta-glucan synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8X3_9STRA)

HSP 1 Score: 253 bits (647), Expect = 8.550e-74
Identity = 136/243 (55.97%), Postives = 175/243 (72.02%), Query Frame = 1 
Query:    7 RYVVSCQVFGKMQKSKKKADLDKAAHIKMLARIYPGLRIAHV--------DEKYGEFYSVLSKNAGNGTDDMEEEYRVRLPGQILVGEGKPNNQNHAVIFTRGEAIQAIDMNQDAALEDAIKIRQVMEEFNFAEGGTGRGR---NIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPDIFDRMSAITMGGVSKACKGIHLSEDIFAGFNYVLRGGEATQADYIQ 702
            RYVVSCQ+   M+  K K    +A +I  LA+ +PGL IA+V         EK  E YSVL++ +G   D ++EE+R++LPG ILVGEGKPNNQN A++FTRG+A+QAIDMNQD  LE+A K R+++  F F  GG  RG    N G IVGFREH+FTH  SAVA +FSLQE  FV+ATQR LD+PL +RFHYGHPD+FD+++AIT GG S+    +HLSEDI AG+ +VLRGG++ Q D+IQ
Sbjct: 1094 RYVVSCQILPAMRLKKAK----EAVYIDWLAQNHPGLCIAYVLEVKEDTGGEKTHEHYSVLARWSG---DSLKEEHRIQLPGTILVGEGKPNNQNQAMVFTRGDAVQAIDMNQDLGLEEAFKQREMLANFRF--GGHARGERAHNAGLIVGFREHIFTHAASAVAMYFSLQESGFVTATQRVLDDPLGIRFHYGHPDLFDKITAITQGGNSRPSTKLHLSEDILAGYVWVLRGGDSIQLDFIQ 1327
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BLAST of Ec-00_000820.1 vs. uniprot
Match: A0A453DH39_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453DH39_AEGTS)

HSP 1 Score: 234 bits (598), Expect = 6.390e-72
Identity = 131/242 (54.13%), Postives = 165/242 (68.18%), Query Frame = 1 
Query:   10 YVVSCQVFGKMQKSKKKADLDKAAHIKMLARIYPGLRIAHVDE-----KYG----EFYSVLSKNAGNGTDDMEEEYRVRLPGQIL-VGEGKPNNQNHAVIFTRGEAIQAIDMNQDAALEDAIKIRQVMEEFNFAEGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPDIFDRMSAITMGGVSKACKGIHLSEDIFAGFNYVLRGGEATQADYIQV 705
            YVVSCQV+G  + SK   +  +  +I  L  +YP LRIA++DE     K G     +YSVL K  G+  D  EE YR++LPG+   +GEGKP NQNHA+IFTRGEA+Q IDMNQD  LE+A K+R V+EEF      T  G++   I+G REH+FT  VS++A F S QE +FV+  QR L NPL VRFHYGHPDIFDR+  IT GG+SKA K I+LSEDIF+GFN  +RGG  T  +Y+QV
Sbjct:  146 YVVSCQVYGMQKVSKDAKEKARYLNILNLMMMYPSLRIAYIDEVEAPNKDGMTEKTYYSVLVKGVGDKYD--EEIYRIKLPGKPTNIGEGKPENQNHAIIFTRGEALQVIDMNQDNYLEEAFKMRNVLEEFE----STKYGKSKPTILGLREHIFTGSVSSLAWFMSNQETSFVTIGQRVLANPLKVRFHYGHPDIFDRLFHITRGGISKASKTINLSEDIFSGFNSTMRGGNITHHEYMQV 381
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BLAST of Ec-00_000820.1 vs. uniprot
Match: A0A7S3U6Q4_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3U6Q4_9SPIT)

HSP 1 Score: 241 bits (616), Expect = 2.960e-70
Identity = 126/250 (50.40%), Postives = 174/250 (69.60%), Query Frame = 1 
Query:   10 YVVSCQVFGKMQKSKKKADLDKAAHIKMLARIYPGLRIAHVDEK-------YGE----------FYSVLSKNAGNGTDD-MEEEYRVRLPGQILVGEGKPNNQNHAVIFTRGEAIQAIDMNQDAALEDAIKIRQVMEEFNFAEGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPDIFDRMSAITMGGVSKACKGIHLSEDIFAGFNYVLRGGEATQADYIQV 705
            YVVSCQ++G  ++++      KAA  + L + +P LR+A+VD+        Y +          FYSVL K +  G ++ +++ YRV+LPG +++GEGKP NQNHAVIFTRGEA+QAIDMNQ   LE+A+K+R ++ EF    G T        IVGFREH+FT  +S++A++ +LQE  FV+ TQR L NPLH+R HYGHPD+FD++ A+T GGVSKA KGIHLSED++AGFN+ LRGG+   A+Y+QV
Sbjct:  313 YVVSCQMYGTHKRNRD----PKAADTEFLLQRFPNLRVAYVDKTSTLSKIPYPDGTSALRETIRFYSVLIKGSKEGGEEAVQQVYRVQLPGDMMLGEGKPENQNHAVIFTRGEALQAIDMNQCGYLEEALKMRNLLGEFRKTPGAT--------IVGFREHIFTGQLSSLASYMALQEGTFVTLTQRVLSNPLHIRQHYGHPDVFDKIFALTTGGVSKASKGIHLSEDVYAGFNHTLRGGKVPYAEYVQV 550
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BLAST of Ec-00_000820.1 vs. uniprot
Match: A0A087GZ47_ARAAL (Uncharacterized protein n=2 Tax=Arabis alpina TaxID=50452 RepID=A0A087GZ47_ARAAL)

HSP 1 Score: 231 bits (588), Expect = 5.620e-70
Identity = 135/241 (56.02%), Postives = 158/241 (65.56%), Query Frame = 1 
Query:   10 YVVSCQVFGKMQKSKKKADLDKAAHIKMLARIYPGLRIAHVDEKYGE--------FYSVLSKNAGNGTDDMEEEYRVRLPGQIL-VGEGKPNNQNHAVIFTRGEAIQAIDMNQDAALEDAIKIRQVMEEFNFAEGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPDIFDRMSAITMGGVSKACKGIHLSEDIFAGFNYVLRGGEATQADYIQV 705
            YVVSCQV+G  +KS    +     +I  L   YP LR+A+VDE+           FYSVL K  GN  D  EE YR++LPG    +GEGKP NQNHA+IFTRGEA+Q IDMNQD   E+A KIR V+EEFN    G    R    I+G REH+FT  VS++A F S QE +FV+  QR L NPL VRFHYGHPDIFDR+  IT GGVSKA K I+LSEDIF GFN  LRGG  T  +YIQV
Sbjct:  207 YVVSCQVYGTQKKSGDIHNRSCYTNILQLMLKYPSLRVAYVDEREETADAKSPKVFYSVLLKG-GNKFD--EEIYRIKLPGPPAEIGEGKPENQNHAIIFTRGEALQTIDMNQDNYFEEAFKIRNVLEEFNKERAG----RRKPTILGLREHIFTGSVSSLAWFMSNQESSFVTIGQRILANPLRVRFHYGHPDIFDRIFHITRGGVSKASKVINLSEDIFGGFNSTLRGGYVTHHEYIQV 440
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BLAST of Ec-00_000820.1 vs. uniprot
Match: A0A453DH34_AEGTS (Uncharacterized protein n=4 Tax=Triticinae TaxID=1648030 RepID=A0A453DH34_AEGTS)

HSP 1 Score: 234 bits (598), Expect = 2.310e-68
Identity = 131/242 (54.13%), Postives = 165/242 (68.18%), Query Frame = 1 
Query:   10 YVVSCQVFGKMQKSKKKADLDKAAHIKMLARIYPGLRIAHVDE-----KYG----EFYSVLSKNAGNGTDDMEEEYRVRLPGQIL-VGEGKPNNQNHAVIFTRGEAIQAIDMNQDAALEDAIKIRQVMEEFNFAEGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPDIFDRMSAITMGGVSKACKGIHLSEDIFAGFNYVLRGGEATQADYIQV 705
            YVVSCQV+G  + SK   +  +  +I  L  +YP LRIA++DE     K G     +YSVL K  G+  D  EE YR++LPG+   +GEGKP NQNHA+IFTRGEA+Q IDMNQD  LE+A K+R V+EEF      T  G++   I+G REH+FT  VS++A F S QE +FV+  QR L NPL VRFHYGHPDIFDR+  IT GG+SKA K I+LSEDIF+GFN  +RGG  T  +Y+QV
Sbjct:  140 YVVSCQVYGMQKVSKDAKEKARYLNILNLMMMYPSLRIAYIDEVEAPNKDGMTEKTYYSVLVKGVGDKYD--EEIYRIKLPGKPTNIGEGKPENQNHAIIFTRGEALQVIDMNQDNYLEEAFKMRNVLEEFE----STKYGKSKPTILGLREHIFTGSVSSLAWFMSNQETSFVTIGQRVLANPLKVRFHYGHPDIFDRLFHITRGGISKASKTINLSEDIFSGFNSTMRGGNITHHEYMQV 375
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BLAST of Ec-00_000820.1 vs. uniprot
Match: A0A7S0NMX1_9EUKA (1,3-beta-glucan synthase n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NMX1_9EUKA)

HSP 1 Score: 237 bits (604), Expect = 5.080e-68
Identity = 121/247 (48.99%), Postives = 175/247 (70.85%), Query Frame = 1 
Query:   10 YVVSCQVFGKMQKSKKKADLDKAAHIKMLARIYPGLRIAHVDEKYG--------------EFYSVLSKNAGNGTDD-MEEEYRVRLPGQILVGEGKPNNQNHAVIFTRGEAIQAIDMNQDAALEDAIKIRQVMEEFNFAEGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPDIFDRMSAITMGGVSKACKGIHLSEDIFAGFNYVLRGGEATQADYIQV 705
            YVVSCQV+G+M++++ +    KAA  + L + +P LR+A+VD+                  FY+VL K A +G+++ +++ YRV+LPG I++GEGKP NQNHA+IFTRGEA+Q IDMNQ   LE+A K+R +++EF+   G T        I+GFREH+FT ++S++A++ +LQE  FV+ TQR L NPL VR HYGHPDIFD++ ++T GG+SKA +GI+LSEDI+AGFN++ RGG     +Y+QV
Sbjct: 1165 YVVSCQVYGQMKRNRDQ----KAADTEFLLQRFPNLRVAYVDKTTSVDTTKGLTGLREQVRFYTVLIKGAKHGSEEAVQQVYRVQLPGDIMLGEGKPENQNHAMIFTRGEALQTIDMNQSGYLEEAFKMRNMLQEFSLCPGST--------ILGFREHIFTGELSSLASYMALQEGCFVTLTQRVLWNPLRVRLHYGHPDIFDKVFSMTNGGISKASRGINLSEDIYAGFNHLQRGGTIPYIEYVQV 1399
The following BLAST results are available for this feature:
BLAST of Ec-00_000820.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIU6_ECTSI9.190e-171100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FXN7_ECTSI1.840e-8360.941,3-beta-glucan synthase n=1 Tax=Ectocarpus silicu... [more]
A0A835ZD62_9STRA1.310e-7871.021,3-beta-glucan synthase component-domain-containi... [more]
A0A6H5L5X7_9PHAE2.660e-7459.53GT48 protein (Fragment) n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C8X3_9STRA8.550e-7455.971,3-beta-glucan synthase n=1 Tax=Tribonema minus T... [more]
A0A453DH39_AEGTS6.390e-7254.13Uncharacterized protein n=1 Tax=Aegilops tauschii ... [more]
A0A7S3U6Q4_9SPIT2.960e-7050.40Hypothetical protein n=1 Tax=Strombidinopsis acumi... [more]
A0A087GZ47_ARAAL5.620e-7056.02Uncharacterized protein n=2 Tax=Arabis alpina TaxI... [more]
A0A453DH34_AEGTS2.310e-6854.13Uncharacterized protein n=4 Tax=Triticinae TaxID=1... [more]
A0A7S0NMX1_9EUKA5.080e-6848.991,3-beta-glucan synthase n=1 Tax=Calcidiscus lepto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:1070797..1073590 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score481.9
Seed ortholog evalue1.8e-133
Seed eggNOG ortholog2880.D7FIU6
Length717
Hectar predicted targeting categoryother localisation
Gene idEc-00_000820.1
EggNOG free text desc.1,3-beta-D-glucan synthase activity
EggNOG OGsKOG0916@1,KOG0916@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000820Ec-00_000820Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 1070797..1073590 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000820.1.1Ec-00_000820.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1070797..1071015 +
Ec-00_000820.1.2Ec-00_000820.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1071615..1071752 +
Ec-00_000820.1.3Ec-00_000820.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1072041..1072220 +
Ec-00_000820.1.4Ec-00_000820.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1073411..1073590 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000820.1CDS:Ec-00_000820.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 1070797..1071015 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000820.1Ec-00_000820.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 1070797..1073590 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_000820.1 ID=Ec-00_000820.1|Name=Ec-00_000820.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=239bp
MGRYVVSCQVFGKMQKSKKKADLDKAAHIKMLARIYPGLRIAHVDEKYGE
FYSVLSKNAGNGTDDMEEEYRVRLPGQILVGEGKPNNQNHAVIFTRGEAI
QAIDMNQDAALEDAIKIRQVMEEFNFAEGGTGRGRNIGRIVGFREHVFTH
DVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPDIFDRMSAITMGG
VSKACKGIHLSEDIFAGFNYVLRGGEATQADYIQVMST*
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spliced messenger RNA

>Ec-00_000820.1 ID=Ec-00_000820.1|Name=Ec-00_000820.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=717bp|location=Sequence derived from alignment at chr_00:1070797..1073590+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCAGGTACGTGGTCTCATGCCAGGTGTTCGGCAAGATGCAGAAGTC
TAAGAAGAAGGCGGACCTCGACAAGGCCGCCCACATCAAGATGCTCGCTC
GCATTTACCCGGGACTCCGCATTGCCCACGTGGACGAGAAGTACGGAGAG
TTTTACTCCGTCCTCTCCAAGAATGCGGGCAACGGTACCGACGACATGGA
GGAGGAGTACCGCGTACGGCTCCCCGGGCAAATCTTGGTGGGGGAGGGTA
AGCCGAACAACCAGAACCACGCAGTGATCTTCACTAGGGGGGAGGCTATC
CAGGCCATCGACATGAACCAAGATGCTGCTCTCGAGGACGCCATCAAGAT
CCGACAGGTGATGGAGGAGTTCAACTTTGCGGAGGGGGGTACGGGGAGGG
GGCGCAACATCGGGCGAATCGTTGGCTTCCGCGAGCACGTGTTCACGCAC
GACGTGTCCGCCGTGGCTAACTTCTTCAGCCTGCAGGAGCTCAACTTCGT
GTCGGCGACGCAGCGTGCGCTCGACAACCCACTTCACGTCCGGTTCCACT
ACGGCCACCCCGACATCTTCGACCGCATGAGTGCGATCACGATGGGAGGT
GTCAGCAAGGCCTGCAAGGGCATCCACCTGTCGGAAGACATTTTCGCCGG
TTTCAACTACGTCCTGAGAGGGGGTGAAGCCACTCAGGCCGACTACATCC
AGGTAATGTCGACTTGA
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protein sequence of Ec-00_000820.1

>Ec-00_000820.1 ID=Ec-00_000820.1|Name=Ec-00_000820.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=239bp
MGRYVVSCQVFGKMQKSKKKADLDKAAHIKMLARIYPGLRIAHVDEKYGE
FYSVLSKNAGNGTDDMEEEYRVRLPGQILVGEGKPNNQNHAVIFTRGEAI
QAIDMNQDAALEDAIKIRQVMEEFNFAEGGTGRGRNIGRIVGFREHVFTH
DVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPDIFDRMSAITMGG
VSKACKGIHLSEDIFAGFNYVLRGGEATQADYIQVMST*
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mRNA from alignment at chr_00:1070797..1073590+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_000820.1 ID=Ec-00_000820.1|Name=Ec-00_000820.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2794bp|location=Sequence derived from alignment at chr_00:1070797..1073590+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGGCAGGTACGTGGTCTCATGCCAGGTGTTCGGCAAGATGCAGAAGTC
TAAGAAGAAGGCGGACCTCGACAAGGCCGCCCACATCAAGATGCTCGCTC
GCATTTACCCGGGACTCCGCATTGCCCACGTGGACGAGAAGTACGGAGAG
TTTTACTCCGTCCTCTCCAAGAATGCGGGCAACGGTACCGACGACATGGA
GGAGGAGTACCGCGTACGGGTAAGCGGCGGCGGACGGGAGTTCTGCGTCG
TCCGGGCGTTCTCTCTTGTCAATGCGCTTGCTTTTGACTAATTGAGGATT
TTTTTGGGGGGGGGATGTATGTAGTTGTTGCTTGCGTGCGTTGGATGTAT
TACGGCTCACCACATGGCCAACCAGCAACAGCGCCGCGGCTACGGTTGGA
GTCGTGCGTGATTTCTCGACCGTTGTACTTGGTCGGGAATCCGATGCCAG
AGGGTGTGAGGGTTGGGATGTGAGCACGTTAGATCCTTGCACTATTTAGT
AAGTTCACAAAGCGGGGACGGTGTGTTATCTAGCTCAGGGCTGCTTTGGC
AACGTGTTGGTTAGCCTGTCGGTGCCTGATTACCGAGCACGTGTTCGTGT
GTGGACTTTTCAACTTGTTTTTCCTTTTTTTCTTCTTTGTCGTATTTTGT
ATCCTGGGTTGTTCGCTGCATGCCGCGCATGGACCGTGGCGTTGTTGTTT
TCAGGAGTGAGTGTGAGCAAATTTCAACAGGCCTCGACGCCTCCCGTCCC
TCACACGCCCGACTCCAACTCCCGCATGATGCACCCGCACCGTGGCACTG
TTGTTGGCTGTCGTGCAGCTCCCCGGGCAAATCTTGGTGGGGGAGGGTAA
GCCGAACAACCAGAACCACGCAGTGATCTTCACTAGGGGGGAGGCTATCC
AGGCCATCGACATGAACCAAGATGCTGCTCTCGAGGACGCCATCAAGATC
CGACAGGTAAACACATGTGTACTTTCCCCGAACCAACATTGGACGAGTAT
TACTTTTCCCAAACAAGACAACGCACACAAGAACAGAGCTCATTTTGAGA
AGAACGATTATCTTCGACACGAGCGAACGCACAGTCTGCAGTTACTAGGA
TCGGGCTTCATCCTCACACCAGGAGAGAGTGGAAAATACGATGTTCACTA
CGTGTGCACCTGCCACCTGGTCTCGAGATTGCTCGAGTACGTATTCTGAC
TTCGTGCGTTTTTGTGTTGGATGCTTGCTTGTTTCCGAACCAAGGTGATG
GAGGAGTTCAACTTTGCGGAGGGGGGTACGGGGAGGGGGCGCAACATCGG
GCGAATCGTTGGCTTCCGCGAGCACGTGTTCACGCACGACGTGTCCGCCG
TGGCTAACTTCTTCAGCCTGCAGGAGCTCAACTTCGTGTCGGCGACGCAG
CGTGCGCTCGACAACCCACTTCACGTGAGAGACAATAACGAGATTCGACG
AACACGACTTTGTTCTGTTGGGTGGAATGCACACATGTCCAAGGTAGCGG
AAAAGGGCAAAGCACGCGCAGGGAAGCTGCACCCAATACTCGTAAACTGG
CACCTCGATACACGCATCAAATTGAAAGTTTTGAGAGAGCGTAGTCGTAA
CGCCGCTAGAGTACGCCGGAGAACTATGGGAAGGAAATAAGAAGGTAGTC
AAAGAACTCGAGGGGGCGCAGATGAAAGCAGCGAAAATCATCCTAGGATG
CTCCAAGCGCACAAGTAATGCAGCCGTCAGGGCAGAATTGGGGATCCAAT
CCCTACGGTCGGGAAGAGACGCAAGGAAGCTGACATGGCAGTATCGCATG
TGCGGGGTGGGAGAGGAGAGGTTGTCGAGAATAGTATGGGAGGCGAAGTG
GGCAAACAGAAAGAGGGGTAGACAACCCACGGAATGGGTCAAGGTTGTAG
AGGACGTATGGAAGGGGTTAGACATCGACAAAGATGAAACGCTGGAAACG
GAGGGTCTACAGGGGTTCAAGGAGAAGATATCTGTTGCTTGTGCCAAGAG
AGAATAACATATCTAAGGAAAGAAACCGAGGATAAGGAGGGTCTAGAAGT
GTACGGAATGTTGAAAGAAGCACTAGGGTTCAAGGATTACCTACATGGAC
CAATGGATGCAGGGACCAAAGCTTAAGGTCAAATTTAGGACCGGGAACAT
AGGCCTTCGAGAACGTCGACGAAGACATAGGACGGTAGACGACGAAGACG
ACAAGTTCACATGTGATTGCGGCTTCGAATGCGAAGACCGTGTTCATGTA
GTCGCGGAATGTCCGTGGTACGACGAGAAGAGGGAAGTGTACATGACGGA
GCTGGGGACAATACAAGGGGCGTACAGGGAGATGTTTGAGGCATGGAATA
GAGAGGAGAGGACGGTAGCTGTACTGGGGAGTAGGAAGTGGTTTGAAAAG
GCGGGAAGGGATATCGTTAGGATAGACAGACTAGGCAAGACATTTTTGAG
CCACCTTTGGCAAAGTAGGAAGGAACGATTGGCCATCGGTGATCGGTCCT
GTGGGAACAATGCTCCGTCCTCTCGAGGACGCGTGGTCAATGGTCTAACC
GCTAAGGCATGCAAAACATCAGAGTACGCCCCCCCCCTCCCCCGGCCGCC
GTCGCTGACTGTAGGTCCGGTTCCACTACGGCCACCCCGACATCTTCGAC
CGCATGAGTGCGATCACGATGGGAGGTGTCAGCAAGGCCTGCAAGGGCAT
CCACCTGTCGGAAGACATTTTCGCCGGTTTCAACTACGTCCTGAGAGGGG
GTGAAGCCACTCAGGCCGACTACATCCAGGTAATGTCGACTTGA
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Coding sequence (CDS) from alignment at chr_00:1070797..1073590+

>Ec-00_000820.1 ID=Ec-00_000820.1|Name=Ec-00_000820.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=717bp|location=Sequence derived from alignment at chr_00:1070797..1073590+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGGCAGGTACGTGGTCTCATGCCAGGTGTTCGGCAAGATGCAGAAGTC
TAAGAAGAAGGCGGACCTCGACAAGGCCGCCCACATCAAGATGCTCGCTC
GCATTTACCCGGGACTCCGCATTGCCCACGTGGACGAGAAGTACGGAGAG
TTTTACTCCGTCCTCTCCAAGAATGCGGGCAACGGTACCGACGACATGGA
GGAGGAGTACCGCGTACGGCTCCCCGGGCAAATCTTGGTGGGGGAGGGTA
AGCCGAACAACCAGAACCACGCAGTGATCTTCACTAGGGGGGAGGCTATC
CAGGCCATCGACATGAACCAAGATGCTGCTCTCGAGGACGCCATCAAGAT
CCGACAGGTGATGGAGGAGTTCAACTTTGCGGAGGGGGGTACGGGGAGGG
GGCGCAACATCGGGCGAATCGTTGGCTTCCGCGAGCACGTGTTCACGCAC
GACGTGTCCGCCGTGGCTAACTTCTTCAGCCTGCAGGAGCTCAACTTCGT
GTCGGCGACGCAGCGTGCGCTCGACAACCCACTTCACGTCCGGTTCCACT
ACGGCCACCCCGACATCTTCGACCGCATGAGTGCGATCACGATGGGAGGT
GTCAGCAAGGCCTGCAAGGGCATCCACCTGTCGGAAGACATTTTCGCCGG
TTTCAACTACGTCCTGAGAGGGGGTGAAGCCACTCAGGCCGACTACATCC
AGGTAATGTCGACTTGA
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Synonyms
The feature 'Ec-00_000820.1' has the following synonyms
Synonym
Esi1232_0001
Esi_1232_0001