Ec-00_000770.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_000770.1
Unique NameEc-00_000770.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length179
Homology
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BLAST of Ec-00_000770.1 vs. uniprot
Match: D7FIJ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIJ2_ECTSI)

HSP 1 Score: 230 bits (586), Expect = 1.820e-71
Identity = 137/138 (99.28%), Postives = 138/138 (100.00%), Query Frame = 1 
Query:  109 MSNIGRRQQAADATAAMAASFGRNRSNQFKPKRPPATPKPVADDGGTSSNLGSGRISHKRYGGGXXXXXXXXXXXXXTELFPVAGADAGATNVTSGGAGTTITIPGTPGATPDAVGSSTARTGVMLWPTGMLARGGVS 522
            MSNIGRRQQAADATAAMAASFGRNRSNQFKPKRPPATPKPVADDGGTSSNLGSGRISHKRYGGGXXXXXXXXXXXXXTELFPVAGADAGATNVTSGGAGTTITIPGTPGATPDAVGSSTARTGVMLWPTGMLARGGV+
Sbjct:    1 MSNIGRRQQAADATAAMAASFGRNRSNQFKPKRPPATPKPVADDGGTSSNLGSGRISHKRYGGGXXXXXXXXXXXXXTELFPVAGADAGATNVTSGGAGTTITIPGTPGATPDAVGSSTARTGVMLWPTGMLARGGVA 138
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BLAST of Ec-00_000770.1 vs. uniprot
Match: A0A6H5L8B1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8B1_9PHAE)

HSP 1 Score: 234 bits (597), Expect = 1.620e-64
Identity = 138/159 (86.79%), Postives = 145/159 (91.19%), Query Frame = 1 
Query:  157 MAASFGRNRSNQFKPKRPPATPKPVADDGGTSSNLGSGRISHKRYGGGXXXXXXXXXXXXXTELFPVAGADAGATNVTSGGAGTTITIPGTPGATPDAVGSSTARTGVMLWPTGMLARGGVSGSGSGGVGGNSRGFTPVTVRPSTDPRRLATPQQGVRK 633
            M ASFGR+R NQFKPKRPPATPKPVADDGGTSSN+GSGRISHKRYGGGXXXXXXXXXXXX TE FPVAGADAGATNVTSGGAGTTIT P    ATPDAVGSSTA+TGVMLWPTGMLARGGV GSGSGGVG NSRGFTPV+V P+T PRR+ATPQQG R+
Sbjct:    1 MTASFGRSRGNQFKPKRPPATPKPVADDGGTSSNVGSGRISHKRYGGGXXXXXXXXXXXXNTEPFPVAGADAGATNVTSGGAGTTITTPXXXXATPDAVGSSTAKTGVMLWPTGMLARGGVGGSGSGGVGVNSRGFTPVSVVPTTGPRRVATPQQGGRE 159
The following BLAST results are available for this feature:
BLAST of Ec-00_000770.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FIJ2_ECTSI1.820e-7199.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L8B1_9PHAE1.620e-6486.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:1026103..1028921 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length1250
Hectar predicted targeting categoryother localisation
Gene idEc-00_000770.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000770Ec-00_000770Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 1026103..1028921 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000770.1Ec-00_000770.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 1027079..1028318 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000770.1.1Ec-00_000770.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1026103..1026175 +
Ec-00_000770.1.2Ec-00_000770.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1027042..1027105 +
Ec-00_000770.1.3Ec-00_000770.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1027450..1027517 +
Ec-00_000770.1.4Ec-00_000770.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1027877..1028921 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0007705UTR:Ec-00_000770.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 1026103..1026175 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000770.1CDS:Ec-00_000770.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 1027079..1027105 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0007703UTR:Ec-00_000770.1Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 1028319..1028921 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_000770.1 ID=Ec-00_000770.1|Name=Ec-00_000770.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=179bp
MSNIGRRQQAADATAAMAASFGRNRSNQFKPKRPPATPKPVADDGGTSSN
LGSGRISHKRYGGGGGGSGGSGGSSGSTELFPVAGADAGATNVTSGGAGT
TITIPGTPGATPDAVGSSTARTGVMLWPTGMLARGGVSGSGSGGVGGNSR
GFTPVTVRPSTDPRRLATPQQGVRKVRS*
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spliced messenger RNA

>Ec-00_000770.1 ID=Ec-00_000770.1|Name=Ec-00_000770.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1250bp|location=Sequence derived from alignment at chr_00:1026103..1028921+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
AGCACCAGCACCAGCAACAACAACCACAGCACGAGCAGCACCAGCACCAG
CAGCAGAACCCCCCCTCCGGCAGGTCTGGGTCTCCTATTCCCGGGACTCC
GGGCGCCAACATGTCAAACATCGGGCGACGCCAGCAGGCCGCTGATGCTA
CCGCCGCCATGGCTGCGTCATTCGGCAGAAACAGAAGCAATCAATTCAAG
CCCAAGCGACCGCCTGCCACGCCGAAGCCCGTCGCGGACGACGGCGGAAC
CAGCAGCAACCTTGGCAGTGGCCGCATTTCGCACAAGCGATACGGCGGGG
GCGGAGGCGGCAGCGGCGGCAGCGGCGGCAGCAGCGGTAGCACGGAGCTG
TTCCCCGTTGCCGGCGCGGACGCCGGCGCCACGAACGTCACCTCTGGTGG
GGCCGGTACTACGATCACCATCCCAGGGACGCCAGGGGCGACGCCCGATG
CAGTCGGCAGCTCAACCGCGAGGACGGGGGTCATGCTGTGGCCGACAGGA
ATGCTGGCGAGAGGGGGTGTGAGTGGCAGCGGTAGTGGTGGTGTCGGTGG
CAATAGCAGAGGCTTTACGCCTGTCACTGTTCGGCCTAGCACCGACCCCA
GACGCTTGGCCACTCCACAACAGGGGGTAAGAAAGGTGCGAAGCTAGGCC
TTTGCCCACAGTTGTGGATAGATAGGTTTTCATGGTCTGTCAGACAGCGC
ACATCGCATCATCCCTTTGGTACCTCCTTTCCTCTCCCGGTCTCTGCTTA
AGATGCAACAGGTTTCTGGTATAGAACAAATCCATGGACGACGTTCGGAA
CGACTGTGCTGTTTGTGTTGACTACCTGTTTCATGTTTCATGACGGGTAG
GTCGCCTCCAAATATACCCTCTAGAGATGCCCTCCTTAGGGGTTCTTTCT
GGCTGCTTGAACCCTCCCGGGCCGCGTGGCTCCATCGTCCGAAGCGATGT
TGAAATTCTCGCTACTCGCGTGCACGATTGTGAAATAATTATCCGGTGTT
TGCCGTCGGGGTTGGGTTTCGTATTTCGTCGCCTGGCAACGACATTGTAA
AACAAGCCAATTCACTTCGTGAACTCGGCAACCAGGTTACCGTTTTTTTT
TTTACCTCTGTTTTTTTTTGCGGTAACCATGATTAGCGGTCGAGTAGATC
ATGTTGTGCGGGGTCGAGAACCCTCACTCCGCGCAAGGGGAATGATCGCA
CCACGTTGTGTTAAAATGGTTAAGCATCCTCGAGGCAGTTACACAGCGCT
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protein sequence of Ec-00_000770.1

>Ec-00_000770.1 ID=Ec-00_000770.1|Name=Ec-00_000770.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=179bp
MSNIGRRQQAADATAAMAASFGRNRSNQFKPKRPPATPKPVADDGGTSSN
LGSGRISHKRYGGGGGGSGGSGGSSGSTELFPVAGADAGATNVTSGGAGT
TITIPGTPGATPDAVGSSTARTGVMLWPTGMLARGGVSGSGSGGVGGNSR
GFTPVTVRPSTDPRRLATPQQGVRKVRS*
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mRNA from alignment at chr_00:1026103..1028921+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_000770.1 ID=Ec-00_000770.1|Name=Ec-00_000770.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2819bp|location=Sequence derived from alignment at chr_00:1026103..1028921+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
AGCACCAGCACCAGCAACAACAACCACAGCACGAGCAGCACCAGCACCAG
CAGCAGAACCCCCCCTCCGGCAGGTAAATACAACCTTCTCTTCATGTCGG
TTGCAGACGGGGCGCCACGCGTGCAGTAGGCTCCCGGCTCTCCTATCAAT
ATCGCCGGTAGCCTTCGTGCAGAGATAAGTTTTTTTTTGGATTGGGTATG
CGGGCCGTGATTCACAATGTCCCGCCCTTTCCCGGAACAAGTGAAGCGGG
AGTGCCCAAAGAGACTCGAGATTCCATCGATCTATGAAGAATCGTGTTTT
TTTTCAACCAGCTTCAGGTCCGGGAAAGTCTTACCTGGGCCTTGCCTGGT
TGATCGCGAAAGTGTAGGCTTTTGCTCGCTCTTGCGTAAGAAGACAGAGA
GACGAATTTCCTGCCATGCCCTCCTTTCTTGTTGACGGAACCCGGTGGTT
TGAGGCGCGACCCGTTAAGCAATGTTTGTTGGTAGTTTGGAGTTGTCACT
GGTGTGGTCGCTGTCGTCGTCGTCTTGACAGAATAATCCCTTCCGACACC
TCCCGAGCACCTCCATTTTCGGTACTCCTCCAAACAGGGAGTGCAATATG
CCCACGGTCACAGGTTACCTCACAGGAAGAAGGCATTAACCTTCCGTTTC
CCCCCCTAGAACTTGACGTGTTCGATGGACCCCCCCCTGTTGCATCGTGA
TATACGTTGGTTTCAGTTGCTGCTCAAATTGCACCCGCAAGATGGATCGA
AGACGCATTTTTTCAACGAGTGCCACAGTTTCTTCGACAGCAGCAGTAGC
CCCTTCACACAAATGTATGGGTTTCATGGGTTGTCCTATGCATCATGACA
TGCTGCGAGGAAGTTGTACAACTGTTTTGTCCTTCTCTACCGTGGTGATG
CTTAGATGATACTGACGACAACCACCACGTTCGTCGCAGGTCTGGGTCTC
CTATTCCCGGGACTCCGGGCGCCAACATGTCAAACATCGGGCGACGCCAG
CAGGTGCAGCGGTCATGTGAAAATATTCTCACTTTTCATGTTCCACAGCC
TAAACACCAAACTTGAATGGGCCGTTTGTTGCTGGATGAAAAGCATGGGT
TCGCTCGTGCGTTCTTTTCGCGTCATGGGAGTGTTATGTACATGCCCCCT
CCCCGGTTGGGAAAACTGTGTGCTCCGGGGCGGGCGCCAATTCGTGGGGT
CATCTTTGCTGCGCCTGCAATGTATGCACACCTGATGCGGGCAGTGGATT
CCCCGTCCTTGACGGCACGGGTTTTGTCTCACGAAGGCTTGTCCAATGTA
AGGCTCCCCGCTGTTCCATCCTGACCTGGTCCCGTTTTCCCTCCCAGGCC
GCTGATGCTACCGCCGCCATGGCTGCGTCATTCGGCAGAAACAGAAGCAA
TCAATTCAAGCCCAAGTGAGTCGATGTGACTTTTGGATTATTGTCTCCAG
GATGAGATGTACCACAGCCAAGGTTGGGTGGGGGAGGGGGAGAGGCACGA
CTGATTTGGTCGTGCATGGGAGGAAAGCGCTATCACATTTCGGTCACTGG
TTCGTGTAACGACTGCGGTGAACGGGGCTTTACTACGCGATTTTACACGG
GTTCACTGCTGGATTCCCTTAGAAGCAACACAACACATACATGCACACAA
GAGATACATTTGAATTGCCTCACCTCACATATGCTTCTCATCAAACGGCC
TGTTGGCCTTGTGTTTTCACTATTTTGTTCAATGTCACCACTATCGTCGC
CCAACGCGGGCTGATCATCTTCAGGCGACCGCCTGCCACGCCGAAGCCCG
TCGCGGACGACGGCGGAACCAGCAGCAACCTTGGCAGTGGCCGCATTTCG
CACAAGCGATACGGCGGGGGCGGAGGCGGCAGCGGCGGCAGCGGCGGCAG
CAGCGGTAGCACGGAGCTGTTCCCCGTTGCCGGCGCGGACGCCGGCGCCA
CGAACGTCACCTCTGGTGGGGCCGGTACTACGATCACCATCCCAGGGACG
CCAGGGGCGACGCCCGATGCAGTCGGCAGCTCAACCGCGAGGACGGGGGT
CATGCTGTGGCCGACAGGAATGCTGGCGAGAGGGGGTGTGAGTGGCAGCG
GTAGTGGTGGTGTCGGTGGCAATAGCAGAGGCTTTACGCCTGTCACTGTT
CGGCCTAGCACCGACCCCAGACGCTTGGCCACTCCACAACAGGGGGTAAG
AAAGGTGCGAAGCTAGGCCTTTGCCCACAGTTGTGGATAGATAGGTTTTC
ATGGTCTGTCAGACAGCGCACATCGCATCATCCCTTTGGTACCTCCTTTC
CTCTCCCGGTCTCTGCTTAAGATGCAACAGGTTTCTGGTATAGAACAAAT
CCATGGACGACGTTCGGAACGACTGTGCTGTTTGTGTTGACTACCTGTTT
CATGTTTCATGACGGGTAGGTCGCCTCCAAATATACCCTCTAGAGATGCC
CTCCTTAGGGGTTCTTTCTGGCTGCTTGAACCCTCCCGGGCCGCGTGGCT
CCATCGTCCGAAGCGATGTTGAAATTCTCGCTACTCGCGTGCACGATTGT
GAAATAATTATCCGGTGTTTGCCGTCGGGGTTGGGTTTCGTATTTCGTCG
CCTGGCAACGACATTGTAAAACAAGCCAATTCACTTCGTGAACTCGGCAA
CCAGGTTACCGTTTTTTTTTTTACCTCTGTTTTTTTTTGCGGTAACCATG
ATTAGCGGTCGAGTAGATCATGTTGTGCGGGGTCGAGAACCCTCACTCCG
CGCAAGGGGAATGATCGCACCACGTTGTGTTAAAATGGTTAAGCATCCTC
GAGGCAGTTACACAGCGCT
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Coding sequence (CDS) from alignment at chr_00:1026103..1028921+

>Ec-00_000770.1 ID=Ec-00_000770.1|Name=Ec-00_000770.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=537bp|location=Sequence derived from alignment at chr_00:1026103..1028921+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTCAAACATCGGGCGACGCCAGCAGGCCGCTGATGCTACCGCCGCCAT
GGCTGCGTCATTCGGCAGAAACAGAAGCAATCAATTCAAGCCCAAGCGAC
CGCCTGCCACGCCGAAGCCCGTCGCGGACGACGGCGGAACCAGCAGCAAC
CTTGGCAGTGGCCGCATTTCGCACAAGCGATACGGCGGGGGCGGAGGCGG
CAGCGGCGGCAGCGGCGGCAGCAGCGGTAGCACGGAGCTGTTCCCCGTTG
CCGGCGCGGACGCCGGCGCCACGAACGTCACCTCTGGTGGGGCCGGTACT
ACGATCACCATCCCAGGGACGCCAGGGGCGACGCCCGATGCAGTCGGCAG
CTCAACCGCGAGGACGGGGGTCATGCTGTGGCCGACAGGAATGCTGGCGA
GAGGGGGTGTGAGTGGCAGCGGTAGTGGTGGTGTCGGTGGCAATAGCAGA
GGCTTTACGCCTGTCACTGTTCGGCCTAGCACCGACCCCAGACGCTTGGC
CACTCCACAACAGGGGGTAAGAAAGGTGCGAAGCTAG
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Synonyms
The feature 'Ec-00_000770.1' has the following synonyms
Synonym
Esi1202_0001
Esi_1202_0001