Ec-00_000760.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_000760.2
Unique NameEc-00_000760.2
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length100
Homology
The following BLAST results are available for this feature:
BLAST of Ec-00_000760.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:1006458..1009143 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length960
Hectar predicted targeting categorysignal peptide
Gene idEc-00_000760.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000760Ec-00_000760Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 1006458..1009143 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000760.2.1Ec-00_000760.2.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1006458..1006518 +
Ec-00_000760.2.2Ec-00_000760.2.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1008245..1009143 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0007605UTR:Ec-00_000760.2Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 1006458..1006518 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000760.2CDS:Ec-00_000760.2Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 1008328..1008627 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0007603UTR:Ec-00_000760.2Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 1008628..1009143 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000760.2Ec-00_000760.2Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 1008328..1008627 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_000760.2 ID=Ec-00_000760.2|Name=Ec-00_000760.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=100bp
MIPETLCMYFAVLWPSLNAIRASLLYNSTPAFGQRRYDVVVMMYMLTTLQ
LQVHGMSMARLHVALHGAYVMCVGVPTSMDHLEEQHTKRAWQRSEKAVV*
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spliced messenger RNA

>Ec-00_000760.2 ID=Ec-00_000760.2|Name=Ec-00_000760.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=960bp|location=Sequence derived from alignment at chr_00:1006458..1009143+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCGCCCTGTACACCTCATCCGCTTCACGGAGCGTTCAATTTCGTT
GAGGGAGACAGAACGAGTCGACACCGTGGCACCGAACGAACCCGTGAATC
TGATGTGTTCATTCCGGTGGAAAGGATCTTGCGAACACTGAGGTATGATA
CCTGAAACGCTGTGTATGTACTTCGCCGTGCTGTGGCCATCCCTGAATGC
AATACGTGCGTCACTGCTGTACAACTCTACACCCGCTTTTGGACAACGTC
GGTATGACGTCGTAGTCATGATGTACATGTTGACCACTTTGCAGCTGCAG
GTACACGGCATGTCCATGGCTAGATTGCATGTTGCGCTGCACGGAGCGTA
TGTAATGTGTGTGGGTGTCCCGACGAGCATGGACCACCTTGAGGAGCAAC
ACACCAAACGAGCGTGGCAGAGGTCCGAAAAAGCGGTAGTGTAGCTACTT
TTCTCATTAGATTCGGCGCTCGCTGTAATTAAAGCGGGTGTAGAGTTGTA
CAGGGACGCATCTTACTAGTAGTTTAGTGCAACGGGAAAATATAGCTCGA
ATTACTTTTTTTCGTCTACGCTCAAACGCAAGGTGATGCCGAAAACTACC
GTGTCTTGGGACATCGGCTGCACGACATTCCTCCTGCGACCGGGGAAAGG
GTTAATCGGTAAAATTGACCATCCGGCTAGTCAGCCGCTGACTAGCCGGG
CTGACTAGCCGGATGGTCTAGTTCCGCGGAGTAAAAGATATGCTCAGAGC
TCGTTAGCACCCACCCGGCCGGATCACATGGGCTTGAGGCTGTTTGTAGC
CTAATCACTGGGATTGAGAGTAGAGATCTCCGGGGCGTACAGTACCCCTC
GCCAGACGCCGCTGTTTTTGGTAAACAAATGGTGATTCTTGTGTAAGTGG
ACCGATTGGGATTCGAACCCGTGCGTGGAACCTTGTGTAAGAACGCTTTG
ACCATTAGAT
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protein sequence of Ec-00_000760.2

>Ec-00_000760.2 ID=Ec-00_000760.2|Name=Ec-00_000760.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=100bp
MIPETLCMYFAVLWPSLNAIRASLLYNSTPAFGQRRYDVVVMMYMLTTLQ
LQVHGMSMARLHVALHGAYVMCVGVPTSMDHLEEQHTKRAWQRSEKAVV*
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mRNA from alignment at chr_00:1006458..1009143+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_000760.2 ID=Ec-00_000760.2|Name=Ec-00_000760.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2686bp|location=Sequence derived from alignment at chr_00:1006458..1009143+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCAGCGCCCTGTACACCTCATCCGCTTCACGGAGCGTTCAATTTCGTT
GAGGGAGACAGGTAAGAGGTTCCGATGGAGAAATTGAACAATACCGGAGA
CGGCAATGGTTTGCGGCACTTGTTGCAGTTGTTGCCCGTACCTCCTCGAT
TGGCTGATCAGTCAGCTTTGCTCTGTGCAGTTCCTAGTGTTTCTTTCGAG
TCTGCAGTTCAAAACTTCGATTTTTTCCGAGGAAGCTGCATCTGCGCGCT
ATCTCTGAAGTACCTCTGTAATGCCGTCCGGTGTTGGCCATTGCAACCAC
GATTGTTTCAGGGTGCTCAACCCAGAAATCCAAAAGATGTCGTTCGATCT
AATGGAGGGATATTCCTTTATTCGCCAAGCTATTGCCGAGAAATCAGACA
CATGCATCTTGCTGTGCGGAGTAATGTACAGATTTATTTTGTTTTCTTTC
GAATTGCTTCATTATTTCTTCGGTTTCTAGGCTACGTGTTGGGGAGAGAG
ACGCACGAAACGCTCATCGTCTCTCTGGCCGCGTTAGCTGCAAAGGCCGG
CGTCAACTCTTACAAATCCATCTCTCTCACCACAAATACTAGCCGGGGGA
CTACGACTGCAAACGCAGGAGTCCCAAAACTGACCAAGTCCTCAAATGGT
ACACACCATTCTACAACACCTGACTAGATACCGAATATTCCCGAACTTAT
GCCCCCACCTTCGAAAGAAAAGGGATGGGAGGGCGGGATTTTCTAAACTG
CCGCCGCTACTGCGTTAGGCGGCTGCTGCTGTCCTTCCGTTGCTTCACGC
GCTCTGTAGCTGTCACACGTTACCCGACTTTGCTACAGCCCCTGCGTGGA
CTCGATCACGGAATGACACCCCCAACTATAGACTAATAATTCCAAACACC
GTGACCCTGGGTTTCCGGTAGAAAATGAAGCCAAATTCTAATTCGACTGT
TACAAAATAAACACCAGTTTATTCTATCTGCTTCGACGAACAAACCTTCC
TATTACTGTATTACATCCCTTTGTTTTGTGCTCCCGTGCTCGAAACCTAT
ACCTGAGAGTTGCATGTGAGTCGTCATCTCGAACGGCCTCCTTTGAGTGT
GTGAATGTTTCCTAAAAGCTGAGTCTGGAGGCTGCATCATGCTACTAGAA
GTATACTCACAAGATGTCGCGATGCATTGAACTTACTTGATATTAGAGTG
GACGCACGTGGGGTGCATAGACTATGTACTGTATTGTACGATAGTTGGTT
TTTTTTGGCCGCGCCACAAGGAGCCTTGGTTAACCCTAACCCTAACCCTA
ACCCAAAACACTACTGGCAACAAGGGAACTCCTGCATTCACCAATGCGTA
AACCTCGGACAAAGTGGAGTACTGTCGTCTCATATGGTGGTGGCCGTTGC
AGAATCCAGTTGTTCCAAGTAGAAACTTCGGAGGACATGAACGACATGAC
CTTTGGATTGCAAACAAACCCATGTGAAATGGATCGATCACCTGAATACC
ATGATGCCGAAATTTCATCGGCTTCGGTCCTTCACTTGAAGTGGTACATC
CCTCTTTCTTCAGGCCCACATACCTGCCGCTGCAATCGCTGACCATGTTG
CAACAACAAGAACAACCCGACCGAGGAGCCGGATCACTGTTGTGCACAAC
AAACGACGCATCTCGTTGTCTATGGCCACCGACTTTCCATCAGCCTTGCA
TTGCTCGTTAAACATCAAAACAATCAAACATCATCATATGCGATGGAAAA
TGCGACGCTGCGGCACCATTTCTCGTTAATCGATCAGAACGAGTCGACAC
CGTGGCACCGAACGAACCCGTGAATCTGATGTGTTCATTCCGGTGGAAAG
GATCTTGCGAACACTGAGGTATGATACCTGAAACGCTGTGTATGTACTTC
GCCGTGCTGTGGCCATCCCTGAATGCAATACGTGCGTCACTGCTGTACAA
CTCTACACCCGCTTTTGGACAACGTCGGTATGACGTCGTAGTCATGATGT
ACATGTTGACCACTTTGCAGCTGCAGGTACACGGCATGTCCATGGCTAGA
TTGCATGTTGCGCTGCACGGAGCGTATGTAATGTGTGTGGGTGTCCCGAC
GAGCATGGACCACCTTGAGGAGCAACACACCAAACGAGCGTGGCAGAGGT
CCGAAAAAGCGGTAGTGTAGCTACTTTTCTCATTAGATTCGGCGCTCGCT
GTAATTAAAGCGGGTGTAGAGTTGTACAGGGACGCATCTTACTAGTAGTT
TAGTGCAACGGGAAAATATAGCTCGAATTACTTTTTTTCGTCTACGCTCA
AACGCAAGGTGATGCCGAAAACTACCGTGTCTTGGGACATCGGCTGCACG
ACATTCCTCCTGCGACCGGGGAAAGGGTTAATCGGTAAAATTGACCATCC
GGCTAGTCAGCCGCTGACTAGCCGGGCTGACTAGCCGGATGGTCTAGTTC
CGCGGAGTAAAAGATATGCTCAGAGCTCGTTAGCACCCACCCGGCCGGAT
CACATGGGCTTGAGGCTGTTTGTAGCCTAATCACTGGGATTGAGAGTAGA
GATCTCCGGGGCGTACAGTACCCCTCGCCAGACGCCGCTGTTTTTGGTAA
ACAAATGGTGATTCTTGTGTAAGTGGACCGATTGGGATTCGAACCCGTGC
GTGGAACCTTGTGTAAGAACGCTTTGACCATTAGAT
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Coding sequence (CDS) from alignment at chr_00:1006458..1009143+

>Ec-00_000760.2 ID=Ec-00_000760.2|Name=Ec-00_000760.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=300bp|location=Sequence derived from alignment at chr_00:1006458..1009143+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGATACCTGAAACGCTGTGTATGTACTTCGCCGTGCTGTGGCCATCCCT
GAATGCAATACGTGCGTCACTGCTGTACAACTCTACACCCGCTTTTGGAC
AACGTCGGTATGACGTCGTAGTCATGATGTACATGTTGACCACTTTGCAG
CTGCAGGTACACGGCATGTCCATGGCTAGATTGCATGTTGCGCTGCACGG
AGCGTATGTAATGTGTGTGGGTGTCCCGACGAGCATGGACCACCTTGAGG
AGCAACACACCAAACGAGCGTGGCAGAGGTCCGAAAAAGCGGTAGTGTAG
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Synonyms
The feature 'Ec-00_000760.2' has the following synonyms
Synonym
Esi1192_0001
Esi_1192_0001