Ec-00_000730.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_000730.1
Unique NameEc-00_000730.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length510
Homology
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BLAST of Ec-00_000730.1 vs. uniprot
Match: D7FI65_ECTSI (Protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI65_ECTSI)

HSP 1 Score: 850 bits (2197), Expect = 2.930e-308
Identity = 509/509 (100.00%), Postives = 509/509 (100.00%), Query Frame = 1 
Query:    1 MHGKGLVHGDVKPDNVILVKKSETLTVAKLADLGLSREVGTTKYKGFGTLGTSITPNNYFDEVPADKADDVWALGVLLLSLLLPRGLFSSNYLTSRVLQTAAEKEALARCRTSKQRLKIKYRMSSRTAKDTSDNGFQKRMVRSMLFVTLEQPIRDTARDFLRRMVDPDASKRPDICEVRAWLPSIVRSAERQTAVMAAAXXXXXXXXXXXXXXPLMARSRGSSVSTISFXXXXXXXXXXXXXXXXXARTSDSASSPSAGSAPXXXXXXEPFSSSVSCGRSGNYSAVVVPAVVPLTSGGSVLSARSPVESGSSVSSSSDGRSWRLAVLLEDEDGMEESGEREYVFPSPSAAAAITPSMAASSGAQREGVDNSAPDSWVPSHDVSSLALSVGAAASAQDDVARHSGPEDAWSTGISGVVSGIDAAVGINSSADISQQQGELSSSAGSVRFSTGAEAAAGESDGLLLLPLLSGGECSTGWSRQSRRGGEGEATVDAGAGSDARDGVGRGIDR 1527
            MHGKGLVHGDVKPDNVILVKKSETLTVAKLADLGLSREVGTTKYKGFGTLGTSITPNNYFDEVPADKADDVWALGVLLLSLLLPRGLFSSNYLTSRVLQTAAEKEALARCRTSKQRLKIKYRMSSRTAKDTSDNGFQKRMVRSMLFVTLEQPIRDTARDFLRRMVDPDASKRPDICEVRAWLPSIVRSAERQTAVMAAAXXXXXXXXXXXXXXPLMARSRGSSVSTISFXXXXXXXXXXXXXXXXXARTSDSASSPSAGSAPXXXXXXEPFSSSVSCGRSGNYSAVVVPAVVPLTSGGSVLSARSPVESGSSVSSSSDGRSWRLAVLLEDEDGMEESGEREYVFPSPSAAAAITPSMAASSGAQREGVDNSAPDSWVPSHDVSSLALSVGAAASAQDDVARHSGPEDAWSTGISGVVSGIDAAVGINSSADISQQQGELSSSAGSVRFSTGAEAAAGESDGLLLLPLLSGGECSTGWSRQSRRGGEGEATVDAGAGSDARDGVGRGIDR
Sbjct:   38 MHGKGLVHGDVKPDNVILVKKSETLTVAKLADLGLSREVGTTKYKGFGTLGTSITPNNYFDEVPADKADDVWALGVLLLSLLLPRGLFSSNYLTSRVLQTAAEKEALARCRTSKQRLKIKYRMSSRTAKDTSDNGFQKRMVRSMLFVTLEQPIRDTARDFLRRMVDPDASKRPDICEVRAWLPSIVRSAERQTAVMAAAXXXXXXXXXXXXXXPLMARSRGSSVSTISFXXXXXXXXXXXXXXXXXARTSDSASSPSAGSAPXXXXXXEPFSSSVSCGRSGNYSAVVVPAVVPLTSGGSVLSARSPVESGSSVSSSSDGRSWRLAVLLEDEDGMEESGEREYVFPSPSAAAAITPSMAASSGAQREGVDNSAPDSWVPSHDVSSLALSVGAAASAQDDVARHSGPEDAWSTGISGVVSGIDAAVGINSSADISQQQGELSSSAGSVRFSTGAEAAAGESDGLLLLPLLSGGECSTGWSRQSRRGGEGEATVDAGAGSDARDGVGRGIDR 546
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BLAST of Ec-00_000730.1 vs. uniprot
Match: D7FX16_ECTSI (Protein kinase domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX16_ECTSI)

HSP 1 Score: 448 bits (1153), Expect = 7.330e-145
Identity = 312/502 (62.15%), Postives = 343/502 (68.33%), Query Frame = 1 
Query:    1 MHGKGLVHGDVKPDNVILVKKSETLTVAKLADLGLSREVGTTKYKGFGTLGTSITPNNYFDEVPADKADDVWALGVLLLSLLLPRGLFSSNYLTSRVLQTAAEKEALARCRTSKQRLKIKYRMSSRTAKDTSDNGFQKRMVRSMLFVTLEQPIRDTARDFLRRMVDPDASKRPDICEVRAWLPSIVRSAERQTAVMAAAXXXXXXXXXXXXXXPLMARSRGSSVSTISFXXXXXXXXXXXXXXXXXARTSDSASSPSAGSAPXXXXXXEPFSSSVSCGRSGNYSAVVVPAVVPLTSGGSVLSARSPVESGSSVSSSSDGRSWRLAVLLEDEDGMEESGEREYVFPSPSAAA-------AITPSMAASSGAQREGVDNSAPDSWVPSHDVSSLALSVGAAASAQDDVARHSGPEDAWSTGISGVVSGIDAAVGINSSADISQQQGELSSSAGSVRFS--TGAEAAAGESDGLLLLPLLSGGECSTGWSRQSRRGGEGEATVDA 1479
            MH K LVHGDVKPDNV+LVKKSETLTVAKLADLGLSR VG  K++G GTLG SITPNNYF+EVPADKADDVWALGVLLLSLLLPRGLFSSN+LTSRVL TAAE+EALAR  TS+QRL+IK+RMSSRTA DTS+NGFQKRM+R MLFVTLEQ +RDTA DFLRRMVDPDASKRPDI EVR+WLPSIVRSAERQTAVMAAA              P +  SRG SVSTISF    XXXXXXXXXXXXX R              XXXXXX         G SG                                         RLAV+LEDEDGM  SG++E   P+P AAA       AITPSMA S+ A+  G DNSAPDSW+PSHD +SLA+  GAA S QD VA +SG EDAWSTG + V SG+DAAVGINSSADISQQQ         VR++  TG           LLLPL+SGG CST  SRQ+R G +GEATVDA
Sbjct:  309 MHSKDLVHGDVKPDNVVLVKKSETLTVAKLADLGLSRAVGERKHRGCGTLGNSITPNNYFEEVPADKADDVWALGVLLLSLLLPRGLFSSNFLTSRVLHTAAEREALARSTTSRQRLEIKFRMSSRTANDTSENGFQKRMIRGMLFVTLEQTMRDTACDFLRRMVDPDASKRPDIGEVRSWLPSIVRSAERQTAVMAAAALVPTMPSPR----PRLPLSRGGSVSTISFSSSGXXXXXXXXXXXXX-RXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGSSG-----------------------------------------RLAVVLEDEDGMAVSGQQEDATPNPPAAATAATATAAITPSMAGSTSAEAAGGDNSAPDSWMPSHDGASLAVGTGAAESVQDGVAHNSGSEDAWSTGTNSV-SGVDAAVGINSSADISQQQ---------VRWARPTG-----------LLLPLVSGGGCSTSGSRQAR-GDDGEATVDA 742
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BLAST of Ec-00_000730.1 vs. uniprot
Match: A0A6H5JJE3_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJE3_9PHAE)

HSP 1 Score: 404 bits (1037), Expect = 6.170e-127
Identity = 299/525 (56.95%), Postives = 315/525 (60.00%), Query Frame = 1 
Query:  115 VGTTKYKGFGTLGTSITPNNYFDEVPADKADDVWALGVLLLSLLLPRGLFSSNYLTSRVLQTAAEKEALARCRTSKQRLKIK----------------------------------------------------------YRMSSRTAKDTSDNGFQKRMVRSMLFVTLEQPIRDTARDFLRRMVDPDASKRPDICEVRAWLPSIVRSAERQTAVMAAAXXXXXXXXXXXXXXPLMARSRGSSVSTISFXXXXXXXXXXXXXXXXXARTSDSASSPSAGSAPXXXXXXEPFSSSVSCGRSGNYSAVVVPAVVPLTSGGSVLSARSPVESGSSVSSSSDGRSWRLAVLLEDEDGMEESGEREYVFPSPSAAAAITPSMAASSG------------AQREGVDNSAPDSWVPSHDVSSLALSVGAAASAQDDVARHSGPEDAWSTGISGVVSGIDAAVGINSSADISQQQGELSSSAGSVRFSTGAEAAAGESDGLLLLPLLSGGECSTGWSRQSRRGGEGEATVDA 1479
            VG  K++G GTLG SITPNNYF+EVPADKADDVWALGVLLLSLLLPRGLFSSNYLTSRVL TAAEKEALAR  TSKQRL IK                                                          YRMS RTA DTS+NGFQKRMVRSMLF TLEQ +RDTA DFLRRMVDPDASKRPDI EVRAWLPSIV SAERQTAVMAAA              P +  SRG SVSTISF   XXXXXXXXXXXX   RTSDSASSPSAGS P      E FS + S G SG                                          LAVLLEDEDGM  SG +E   P P AAA                       A+  G DNS PDSW+PSHD SSLA+  GAA+S QD VA  SG EDAWSTGIS V SGID AVGINS ADISQQQ ELSS+AGSVRF + A  AAG SDGL LLPLLSGG C TG SRQ+R G +GEATVDA
Sbjct:  389 VGEKKHRGCGTLGNSITPNNYFEEVPADKADDVWALGVLLLSLLLPRGLFSSNYLTSRVLHTAAEKEALARSTTSKQRLNIKVRTSTSVLVQLMRTPSVVTNLLPKYGTWDDNFVPRLVLCRCHRMCTRVCRPLACLSLQYRMSFRTANDTSENGFQKRMVRSMLFATLEQTMRDTACDFLRRMVDPDASKRPDIGEVRAWLPSIVLSAERQTAVMAAAALVPTTPSPP----PRLPLSRGGSVSTISFSSSXXXXXXXXXXXX---RTSDSASSPSAGSTPSAGGSVESFSCAPSRGSSGG-----------------------------------------LAVLLEDEDGMAMSGAQENAIPDPHAAATTXXXXXXXXXXXXXXXXXXXXXAEAAGGDNSTPDSWMPSHDGSSLAVGAGAASSVQDGVAHSSGSEDAWSTGISSV-SGIDVAVGINSGADISQQQVELSSNAGSVRFFSRA-GAAGASDGL-LLPLLSGGGCGTGGSRQAR-GEDGEATVDA 861
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BLAST of Ec-00_000730.1 vs. uniprot
Match: D7FX33_ECTSI (Serine/threonine protein kinase with WD40 repeats n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX33_ECTSI)

HSP 1 Score: 310 bits (793), Expect = 2.930e-92
Identity = 161/199 (80.90%), Postives = 178/199 (89.45%), Query Frame = 1 
Query:    1 MHGKGLVHGDVKPDNVILVKKSETLTVAKLADLGLSREVGTTKYKGFGTLGTSITPNNYFDEVPADKADDVWALGVLLLSLLLPRGLFSSNYLTSRVLQTAAEKEALARCRTSKQRLKIKYRMSSRTAKDTSDNGFQKRMVRSMLFVTLEQPIRDTARDFLRRMVDPDASKRPDICEVRAWLPSIVRSAERQTAVMAAA 597
            MH KGLVHGD+KPDNV+LVKK++TLTVAKLADLGLSR VG  KY+G GTLG SITPNN+F  VPADKADDVWALGVLLLSLLLPRGLFSSN+LTSRVL TAAE+EALAR  TS+QRL+IKY MS RTA DTS+NGFQKRMVRS+LFVTLEQ +RDTA  FLRRMVDPDAS+RPDI EVRAWLPSI++SAERQ+  MA A
Sbjct:  336 MHSKGLVHGDLKPDNVLLVKKTDTLTVAKLADLGLSRAVGERKYRGCGTLGNSITPNNFFRAVPADKADDVWALGVLLLSLLLPRGLFSSNFLTSRVLHTAAEREALARSTTSRQRLEIKYGMSFRTANDTSENGFQKRMVRSVLFVTLEQTMRDTACSFLRRMVDPDASERPDIGEVRAWLPSIIQSAERQSRAMATA 534
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BLAST of Ec-00_000730.1 vs. uniprot
Match: A0A7N2M7Q2_QUELO (Protein kinase domain-containing protein n=1 Tax=Quercus lobata TaxID=97700 RepID=A0A7N2M7Q2_QUELO)

HSP 1 Score: 61.6 bits (148), Expect = 1.830e-6
Identity = 35/93 (37.63%), Postives = 54/93 (58.06%), Query Frame = 1 
Query:    1 MHGKGLVHGDVKPDNVILVKKSETLTVAKLADLGLSREVGTTKYKGFGTLGTS--ITPNNYFDEVPADKADDVWALGVLLLSLLLPRGLFSSN 273
            +H KG+VH D+KP N++L      L VAK+AD GL++   T +    G  GT+  + P +  DE+    +D VWALG ++L++L  R  +  N
Sbjct:  153 VHKKGIVHCDIKPQNILLAPDETGLLVAKIADFGLAKS--TFRDLEIGVRGTAMYLAPESIIDEIQLQPSD-VWALGCVVLNMLTRRPTWKLN 242
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BLAST of Ec-00_000730.1 vs. uniprot
Match: A0A850B9X1_9DELT (Non-specific serine/threonine protein kinase n=1 Tax=Polyangiaceae bacterium TaxID=2268199 RepID=A0A850B9X1_9DELT)

HSP 1 Score: 60.1 bits (144), Expect = 8.440e-6
Identity = 34/96 (35.42%), Postives = 50/96 (52.08%), Query Frame = 1 
Query:    4 HGKGLVHGDVKPDNVILVKKSETLTVAKLADLGLSREVGTTKYKGFGTLGTSI------TPNNYFDEVPADKADDVWALGVLLLSLLLPRGLFSSN 273
            HGKG++H DVKP+N+ILV+      + KL D G+++  G  + +G   LG ++       P    D   A    DVWA+G+LL  L   +  F  N
Sbjct:  256 HGKGIIHRDVKPENIILVRTPSNDRIPKLIDFGIAKLSGARR-QGLTRLGVAMGTPGYMAPEQIRDASSAGAPADVWAVGMLLFELFTGKLPFEGN 350
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BLAST of Ec-00_000730.1 vs. uniprot
Match: A0A1J6IC90_NICAT (Mitogen-activated protein kinase kinase kinase npk1 n=1 Tax=Nicotiana attenuata TaxID=49451 RepID=A0A1J6IC90_NICAT)

HSP 1 Score: 58.2 bits (139), Expect = 1.060e-5
Identity = 32/93 (34.41%), Postives = 53/93 (56.99%), Query Frame = 1 
Query:    1 MHGKGLVHGDVKPDNVILVKKSETLTVAKLADLGLSREVGTTKYKGFGTLGTS--ITPNNYFDEVPADKADDVWALGVLLLSLLLPRGLFSSN 273
            +H +G++H D+KPDN++L    ET   AK+AD GLS  +  ++ +  G  GT   + P +  DE    + D +WALG ++  L+    L+ S+
Sbjct:  130 IHSRGVIHCDIKPDNILLAGSDET---AKIADFGLSMTLEQSRAQKHGLRGTERYLAPESVVDEEYGPEVD-IWALGCIVYELMTGTPLWESD 218
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BLAST of Ec-00_000730.1 vs. uniprot
Match: A0A6H5K8D2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8D2_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 1.340e-5
Identity = 46/85 (54.12%), Postives = 56/85 (65.88%), Query Frame = 1 
Query:  874 VPLTSGGSVLSARSPVESGSSVSSSSDGRSWRLAVLLEDEDGMEESGEREYVF----PSPSAAAA-ITPSMAASSG-AQREGVDN 1110
            +PLTS GSV S  SPVES +SV  SS+GRS RLAVLLE EDG   S E+++      P+P A+ A IT S+ AS+  AQ E  DN
Sbjct:    4 IPLTSTGSVPSNGSPVESVASVPPSSEGRSGRLAVLLEKEDGAAVSEEQQHAIIPNPPTPGASTAVITLSIVASTNSAQPESGDN 88
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BLAST of Ec-00_000730.1 vs. uniprot
Match: UPI000904699C (phosphoenolpyruvate carboxylase kinase 2-like n=1 Tax=Nicotiana attenuata TaxID=49451 RepID=UPI000904699C)

HSP 1 Score: 58.2 bits (139), Expect = 1.380e-5
Identity = 32/93 (34.41%), Postives = 53/93 (56.99%), Query Frame = 1 
Query:    1 MHGKGLVHGDVKPDNVILVKKSETLTVAKLADLGLSREVGTTKYKGFGTLGTS--ITPNNYFDEVPADKADDVWALGVLLLSLLLPRGLFSSN 273
            +H +G++H D+KPDN++L    ET   AK+AD GLS  +  ++ +  G  GT   + P +  DE    + D +WALG ++  L+    L+ S+
Sbjct:  130 IHSRGVIHCDIKPDNILLAGSDET---AKIADFGLSMTLEQSRAQKHGLRGTERYLAPESVVDEEYGPEVD-IWALGCIVYELMTGTPLWESD 218
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BLAST of Ec-00_000730.1 vs. uniprot
Match: A0A5A7QM45_STRAF (Mitogen-activated protein kinase kinase kinase (Fragment) n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7QM45_STRAF)

HSP 1 Score: 58.9 bits (141), Expect = 1.790e-5
Identity = 33/82 (40.24%), Postives = 49/82 (59.76%), Query Frame = 1 
Query:    1 MHGKGLVHGDVKPDNVILVKKSETLTVAKLADLGLSREVGTTKYKGFGTLGTSITPNNYFDEVPADKADDVWALGVLLLSLL 246
            +HG GLVH D+KP+NV+LV +++    AK++D GLS+E GT  Y        S     Y  +   ++  DVWALG ++L +L
Sbjct:  422 IHGLGLVHCDLKPENVLLVAENDGNLTAKISDFGLSKERGTIPYVCGTRAYLSPEAELYGTQ---EEPSDVWALGCVVLEML 500
The following BLAST results are available for this feature:
BLAST of Ec-00_000730.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
D7FI65_ECTSI2.930e-308100.00Protein kinase n=1 Tax=Ectocarpus siliculosus TaxI... [more]
D7FX16_ECTSI7.330e-14562.15Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A6H5JJE3_9PHAE6.170e-12756.95Protein kinase domain-containing protein n=1 Tax=E... [more]
D7FX33_ECTSI2.930e-9280.90Serine/threonine protein kinase with WD40 repeats ... [more]
A0A7N2M7Q2_QUELO1.830e-637.63Protein kinase domain-containing protein n=1 Tax=Q... [more]
A0A850B9X1_9DELT8.440e-635.42Non-specific serine/threonine protein kinase n=1 T... [more]
A0A1J6IC90_NICAT1.060e-534.41Mitogen-activated protein kinase kinase kinase npk... [more]
A0A6H5K8D2_9PHAE1.340e-554.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI000904699C1.380e-534.41phosphoenolpyruvate carboxylase kinase 2-like n=1 ... [more]
A0A5A7QM45_STRAF1.790e-540.24Mitogen-activated protein kinase kinase kinase (Fr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:952760..955879 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score856.7
Seed ortholog evalue5.6e-246
Seed eggNOG ortholog2880.D7FI65
Length1530
KEGG koko:K08857
Hectar predicted targeting categoryother localisation
Gene idEc-00_000730.1
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsKOG0589@1,KOG0589@2759
EC2.7.11.1
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001,ko03036,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000730Ec-00_000730Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 952760..955879 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000730.1Ec-00_000730.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 952760..955879 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000730.1.1Ec-00_000730.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 952760..952871 +
Ec-00_000730.1.2Ec-00_000730.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 953148..953395 +
Ec-00_000730.1.3Ec-00_000730.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 954205..954306 +
Ec-00_000730.1.4Ec-00_000730.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 954702..955732 +
Ec-00_000730.1.5Ec-00_000730.1.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 955843..955879 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000730.1CDS:Ec-00_000730.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 952760..952871 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_000730.1 ID=Ec-00_000730.1|Name=Ec-00_000730.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=510bp
MHGKGLVHGDVKPDNVILVKKSETLTVAKLADLGLSREVGTTKYKGFGTL
GTSITPNNYFDEVPADKADDVWALGVLLLSLLLPRGLFSSNYLTSRVLQT
AAEKEALARCRTSKQRLKIKYRMSSRTAKDTSDNGFQKRMVRSMLFVTLE
QPIRDTARDFLRRMVDPDASKRPDICEVRAWLPSIVRSAERQTAVMAAAA
LVPTTPSPPPPRSPLMARSRGSSVSTISFSSSGGSSESSSSSSSSAARTS
DSASSPSAGSAPSAGGSVEPFSSSVSCGRSGNYSAVVVPAVVPLTSGGSV
LSARSPVESGSSVSSSSDGRSWRLAVLLEDEDGMEESGEREYVFPSPSAA
AAITPSMAASSGAQREGVDNSAPDSWVPSHDVSSLALSVGAAASAQDDVA
RHSGPEDAWSTGISGVVSGIDAAVGINSSADISQQQGELSSSAGSVRFST
GAEAAAGESDGLLLLPLLSGGECSTGWSRQSRRGGEGEATVDAGAGSDAR
DGVGRGIDR*
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spliced messenger RNA

>Ec-00_000730.1 ID=Ec-00_000730.1|Name=Ec-00_000730.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1530bp|location=Sequence derived from alignment at chr_00:952760..955879+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACGGAAAGGGCCTGGTCCACGGGGATGTTAAGCCGGACAACGTCAT
CCTCGTCAAGAAGAGCGAGACCCTTACCGTGGCCAAGTTGGCTGACCTTG
GACTATCGCGTGAAGTGGGCACCACCAAGTACAAGGGCTTCGGTACGCTC
GGGACCTCCATCACTCCCAACAATTACTTCGATGAGGTTCCCGCTGACAA
GGCGGACGACGTCTGGGCCCTCGGCGTGCTGCTTCTGTCCTTGTTGCTGC
CGCGGGGCCTGTTCTCGAGTAACTACTTGACGAGCCGCGTGCTCCAGACC
GCCGCGGAGAAGGAGGCCCTCGCACGCTGCAGGACGAGCAAGCAGAGGCT
CAAGATTAAGTACCGCATGTCCTCCCGCACGGCCAAAGATACGTCGGATA
ACGGTTTCCAGAAGAGGATGGTCAGGAGCATGCTGTTCGTGACTCTCGAG
CAGCCGATACGGGACACCGCCCGTGATTTTCTGCGGCGCATGGTCGACCC
CGACGCCAGCAAACGGCCGGACATCTGCGAGGTGCGGGCGTGGTTGCCGT
CCATCGTCCGGTCCGCGGAGAGGCAGACGGCGGTCATGGCGGCGGCCGCT
CTGGTGCCGACAACGCCATCTCCCCCACCGCCCCGGTCGCCGCTGATGGC
GAGGTCGAGAGGGAGCTCCGTGTCTACGATTTCGTTTTCGTCTTCCGGCG
GTAGCTCGGAGTCTTCTTCTTCTTCTTCTTCTTCTGCGGCGAGAACGTCA
GACTCTGCTTCTTCGCCTTCGGCCGGATCGGCGCCGTCGGCCGGGGGCTC
CGTAGAACCATTCTCGTCTTCGGTCTCTTGCGGTAGGTCGGGAAATTACT
CGGCGGTGGTAGTGCCTGCTGTCGTTCCCTTGACCTCGGGCGGATCGGTG
CTTTCGGCCAGGAGCCCCGTGGAATCGGGTTCGTCTGTCTCCTCCTCCTC
CGACGGCAGGTCGTGGAGGCTCGCCGTTCTCTTGGAGGACGAGGACGGTA
TGGAGGAGAGTGGCGAACGAGAGTACGTTTTCCCGAGCCCGTCCGCCGCC
GCCGCCATCACTCCCTCGATGGCCGCCAGCTCTGGTGCACAGCGTGAGGG
CGTCGACAACTCGGCCCCGGACTCTTGGGTGCCCTCGCACGACGTGTCTT
CTCTCGCCCTCTCTGTCGGTGCGGCTGCGAGCGCGCAGGACGACGTGGCG
CGCCACTCCGGTCCGGAGGACGCCTGGTCCACCGGCATCAGCGGCGTCGT
CTCCGGCATCGATGCTGCCGTCGGAATCAACTCGAGCGCCGACATCTCCC
AGCAGCAGGGCGAATTGTCTTCGAGCGCGGGCTCTGTTCGGTTTTCCACC
GGGGCAGAGGCGGCGGCGGGCGAGAGCGACGGGCTTCTGCTGTTGCCGCT
GCTCAGCGGGGGCGAGTGCAGCACCGGCTGGAGCCGGCAGTCCCGACGAG
GCGGCGAGGGAGAGGCGACGGTGGATGCCGGGGCTGGGTCCGACGCCCGC
GATGGCGTCGGAAGAGGGATCGATCGGTGA
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protein sequence of Ec-00_000730.1

>Ec-00_000730.1 ID=Ec-00_000730.1|Name=Ec-00_000730.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=510bp
MHGKGLVHGDVKPDNVILVKKSETLTVAKLADLGLSREVGTTKYKGFGTL
GTSITPNNYFDEVPADKADDVWALGVLLLSLLLPRGLFSSNYLTSRVLQT
AAEKEALARCRTSKQRLKIKYRMSSRTAKDTSDNGFQKRMVRSMLFVTLE
QPIRDTARDFLRRMVDPDASKRPDICEVRAWLPSIVRSAERQTAVMAAAA
LVPTTPSPPPPRSPLMARSRGSSVSTISFSSSGGSSESSSSSSSSAARTS
DSASSPSAGSAPSAGGSVEPFSSSVSCGRSGNYSAVVVPAVVPLTSGGSV
LSARSPVESGSSVSSSSDGRSWRLAVLLEDEDGMEESGEREYVFPSPSAA
AAITPSMAASSGAQREGVDNSAPDSWVPSHDVSSLALSVGAAASAQDDVA
RHSGPEDAWSTGISGVVSGIDAAVGINSSADISQQQGELSSSAGSVRFST
GAEAAAGESDGLLLLPLLSGGECSTGWSRQSRRGGEGEATVDAGAGSDAR
DGVGRGIDR*
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mRNA from alignment at chr_00:952760..955879+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_000730.1 ID=Ec-00_000730.1|Name=Ec-00_000730.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3120bp|location=Sequence derived from alignment at chr_00:952760..955879+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCACGGAAAGGGCCTGGTCCACGGGGATGTTAAGCCGGACAACGTCAT
CCTCGTCAAGAAGAGCGAGACCCTTACCGTGGCCAAGTTGGCTGACCTTG
GACTATCGCGTGGTGGGACATGTGTGTGTGTGAGAGAGAGAGAGAGAGAG
AGACAGACAGACAGACAGACAGCTAGAGGGCGCATTGCTTCGAGTAGTGA
TTGCATTGCAGAGCATTTGCTTCTTGCTAATAGCTCTCAAGTGTTGCGGA
CCATTCTTGGAAAAAAAACAACCAGAGACACAAGCCGCTGAACATGCGAC
TTCTCTCCGTCTCTACCCCCTCCCCCCCACGGCTGCTCATGCACATGGTG
CCCGTCGCGTCTGGACCCTCCCACTGCCGCTGCTACAGAAGTGGGCACCA
CCAAGTACAAGGGCTTCGGTACGCTCGGGACCTCCATCACTCCCAACAAT
TACTTCGATGAGGTTCCCGCTGACAAGGCGGACGACGTCTGGGCCCTCGG
CGTGCTGCTTCTGTCCTTGTTGCTGCCGCGGGGCCTGTTCTCGAGTAACT
ACTTGACGAGCCGCGTGCTCCAGACCGCCGCGGAGAAGGAGGCCCTCGCA
CGCTGCAGGACGAGCAAGCAGAGGCTCAAGATTAAGGTGCGGTCTAGTCC
CCCCCCCGGTAGCGATAAATAGATCCGGGCCTCGGTCGCTTGCGCGTTTT
TTTTGTCTCCCTTAATCTCGTGGCGCATTGGCTTGGTTGTCATCGGTCGT
TGCCGTTGTTGTTGTTGTTATTGACATGAATAACCGTTTGGTTCTCTGAT
CAGAAACTTGACATCCGAAGTCTTTACTGACGCGGACACCTTCCGTGGTC
TCAGACAAACTACCCACAGAGGCCACCACCGTGAATCGTCGAATGAGAAC
AGAACACACCCGGGCGTAATACCGATGTCATTTGAGTGCACTTGTTTTCG
TTTAAAGGGGAAAGGGAGGGGTGCTTGCAACCAGCCAGCCGACCAGAGAC
GAATGAAACTATGTGGTCGTGTTTTTGTGTCGTGTGTACTGTATGGGGAC
ATGGTTTTTCCGCCCTAGTTCGAGTATCAGTGCACGTATGCTCGTGTGGT
GCCACGGAGTCGTGTCTATCAGAGACGTTATCTGCGTGAGCGAGCCAATG
GCCTGGCATTTTTTGGGACCTCAGCCCCACAGCAGCAGCGCTGAGTTCCT
GGAACGTTGAGACGCTAGGCGCAATATCGTTGAGCTGCGTGGCGTGTAAG
CATCGTCTTCTTTCTTCCTCCTCCGGCGGGACATTGCGAAAACGAGAAAA
AGACCACAAACCTGGCTGACCCTCGCTACCATGTGCGCACAGGTTCAACT
GATGACAATATCGCCCCCCCCCCCGCCCCGTTATTTGCCGATGCCGCTGG
ATGTGCACGCGTGTGTTCCGCCCTCTTGCTTTTCTCTCCCTCCAGTACCG
CATGTCCTCCCGCACGGCCAAAGATACGTCGGATAACGGTTTCCAGAAGA
GGATGGTCAGGAGCATGCTGTTCGTGACTCTCGAGCAGCCGATACGGGTG
AGTTTTCCCCTCACGAGCATTCCCCCGTCCCTGACATATTTCCCTCTATC
GTGAAGCCGTAGATCCTACTCCCACTACACCCTCCCTCCCTCTCTCCCTT
GAGTTTTTTTCCAGCATATATGCATGCTACGGTAGTATTGACACCTTTCA
TGAGAACAGTACCAAAACGCGATGAATCATCCATCGGGTCAGCCCACGTT
TGTTCTCTCCGGCTCTGCTCGTGCATGAAGCTTCCCTCCTACTCTTGCTC
CTTCAAAGTCATTGGGTCGCCGTTGCTAGCTACTGTCGTTCTTCTTTAAA
TTCGCTAGGATAAAGGTGACCTCAAACACACCACCCAACCCGGCGCTTTG
GTGCATTGTCTTGTCTCTACCCCCGTCACCCGCCACTTCCAGGACACCGC
CCGTGATTTTCTGCGGCGCATGGTCGACCCCGACGCCAGCAAACGGCCGG
ACATCTGCGAGGTGCGGGCGTGGTTGCCGTCCATCGTCCGGTCCGCGGAG
AGGCAGACGGCGGTCATGGCGGCGGCCGCTCTGGTGCCGACAACGCCATC
TCCCCCACCGCCCCGGTCGCCGCTGATGGCGAGGTCGAGAGGGAGCTCCG
TGTCTACGATTTCGTTTTCGTCTTCCGGCGGTAGCTCGGAGTCTTCTTCT
TCTTCTTCTTCTTCTGCGGCGAGAACGTCAGACTCTGCTTCTTCGCCTTC
GGCCGGATCGGCGCCGTCGGCCGGGGGCTCCGTAGAACCATTCTCGTCTT
CGGTCTCTTGCGGTAGGTCGGGAAATTACTCGGCGGTGGTAGTGCCTGCT
GTCGTTCCCTTGACCTCGGGCGGATCGGTGCTTTCGGCCAGGAGCCCCGT
GGAATCGGGTTCGTCTGTCTCCTCCTCCTCCGACGGCAGGTCGTGGAGGC
TCGCCGTTCTCTTGGAGGACGAGGACGGTATGGAGGAGAGTGGCGAACGA
GAGTACGTTTTCCCGAGCCCGTCCGCCGCCGCCGCCATCACTCCCTCGAT
GGCCGCCAGCTCTGGTGCACAGCGTGAGGGCGTCGACAACTCGGCCCCGG
ACTCTTGGGTGCCCTCGCACGACGTGTCTTCTCTCGCCCTCTCTGTCGGT
GCGGCTGCGAGCGCGCAGGACGACGTGGCGCGCCACTCCGGTCCGGAGGA
CGCCTGGTCCACCGGCATCAGCGGCGTCGTCTCCGGCATCGATGCTGCCG
TCGGAATCAACTCGAGCGCCGACATCTCCCAGCAGCAGGGCGAATTGTCT
TCGAGCGCGGGCTCTGTTCGGTTTTCCACCGGGGCAGAGGCGGCGGCGGG
CGAGAGCGACGGGCTTCTGCTGTTGCCGCTGCTCAGCGGGGGCGAGTGCA
GCACCGGCTGGAGCCGGCAGTCCCGACGAGGCGGCGAGGGAGAGGCGACG
GTGGATGCCGGGGCTGGGTCCGAGCCCGTAGCGGCGGGGCGTGCGAGCGT
CGAAGGCATCGTCGACGGCATCGGCAACGAGGACACCGACGCCTCCGGCG
CGATGGCCGTGACGTTGACTCTGACCCCGGCAGCGCCCGCGATGGCGTCG
GAAGAGGGATCGATCGGTGA
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Coding sequence (CDS) from alignment at chr_00:952760..955879+

>Ec-00_000730.1 ID=Ec-00_000730.1|Name=Ec-00_000730.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=1530bp|location=Sequence derived from alignment at chr_00:952760..955879+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCACGGAAAGGGCCTGGTCCACGGGGATGTTAAGCCGGACAACGTCAT
CCTCGTCAAGAAGAGCGAGACCCTTACCGTGGCCAAGTTGGCTGACCTTG
GACTATCGCGTGAAGTGGGCACCACCAAGTACAAGGGCTTCGGTACGCTC
GGGACCTCCATCACTCCCAACAATTACTTCGATGAGGTTCCCGCTGACAA
GGCGGACGACGTCTGGGCCCTCGGCGTGCTGCTTCTGTCCTTGTTGCTGC
CGCGGGGCCTGTTCTCGAGTAACTACTTGACGAGCCGCGTGCTCCAGACC
GCCGCGGAGAAGGAGGCCCTCGCACGCTGCAGGACGAGCAAGCAGAGGCT
CAAGATTAAGTACCGCATGTCCTCCCGCACGGCCAAAGATACGTCGGATA
ACGGTTTCCAGAAGAGGATGGTCAGGAGCATGCTGTTCGTGACTCTCGAG
CAGCCGATACGGGACACCGCCCGTGATTTTCTGCGGCGCATGGTCGACCC
CGACGCCAGCAAACGGCCGGACATCTGCGAGGTGCGGGCGTGGTTGCCGT
CCATCGTCCGGTCCGCGGAGAGGCAGACGGCGGTCATGGCGGCGGCCGCT
CTGGTGCCGACAACGCCATCTCCCCCACCGCCCCGGTCGCCGCTGATGGC
GAGGTCGAGAGGGAGCTCCGTGTCTACGATTTCGTTTTCGTCTTCCGGCG
GTAGCTCGGAGTCTTCTTCTTCTTCTTCTTCTTCTGCGGCGAGAACGTCA
GACTCTGCTTCTTCGCCTTCGGCCGGATCGGCGCCGTCGGCCGGGGGCTC
CGTAGAACCATTCTCGTCTTCGGTCTCTTGCGGTAGGTCGGGAAATTACT
CGGCGGTGGTAGTGCCTGCTGTCGTTCCCTTGACCTCGGGCGGATCGGTG
CTTTCGGCCAGGAGCCCCGTGGAATCGGGTTCGTCTGTCTCCTCCTCCTC
CGACGGCAGGTCGTGGAGGCTCGCCGTTCTCTTGGAGGACGAGGACGGTA
TGGAGGAGAGTGGCGAACGAGAGTACGTTTTCCCGAGCCCGTCCGCCGCC
GCCGCCATCACTCCCTCGATGGCCGCCAGCTCTGGTGCACAGCGTGAGGG
CGTCGACAACTCGGCCCCGGACTCTTGGGTGCCCTCGCACGACGTGTCTT
CTCTCGCCCTCTCTGTCGGTGCGGCTGCGAGCGCGCAGGACGACGTGGCG
CGCCACTCCGGTCCGGAGGACGCCTGGTCCACCGGCATCAGCGGCGTCGT
CTCCGGCATCGATGCTGCCGTCGGAATCAACTCGAGCGCCGACATCTCCC
AGCAGCAGGGCGAATTGTCTTCGAGCGCGGGCTCTGTTCGGTTTTCCACC
GGGGCAGAGGCGGCGGCGGGCGAGAGCGACGGGCTTCTGCTGTTGCCGCT
GCTCAGCGGGGGCGAGTGCAGCACCGGCTGGAGCCGGCAGTCCCGACGAG
GCGGCGAGGGAGAGGCGACGGTGGATGCCGGGGCTGGGTCCGACGCCCGC
GATGGCGTCGGAAGAGGGATCGATCGGTGA
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Synonyms
The feature 'Ec-00_000730.1' has the following synonyms
Synonym
Esi1172_0001
Esi_1172_0001