Ec-00_000660.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_000660.1
Unique NameEc-00_000660.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length134
Homology
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BLAST of Ec-00_000660.1 vs. uniprot
Match: A0A6H5JDI2_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDI2_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 2.190e-11
Identity = 116/133 (87.22%), Postives = 118/133 (88.72%), Query Frame = -2 
Query:    3 QRGFLFSLAAATGARPLPRTIPPVSSSSSLAPIVLAGSPCSSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAATRPSXXXXSAPLDVLDLSMMSASPLEV 401
            +RGFL SLAAATGARPLPR IPP SS SSLAPIVLA SPCSSL  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       XXXXSAPLDVLDLS MSASP+EV
Sbjct:  253 KRGFLVSLAAATGARPLPRKIPPASSFSSLAPIVLANSPCSSLSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAPLDVLDLSTMSASPMEV 385
The following BLAST results are available for this feature:
BLAST of Ec-00_000660.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JDI2_9PHAE2.190e-1187.22RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:891231..891632 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length402
Hectar predicted targeting categoryother localisation
Gene idEc-00_000660.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000660Ec-00_000660Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 890885..891912 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000660.1.1Ec-00_000660.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 891231..891632 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000660.1CDS:Ec-00_000660.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 891231..891632 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000660.1Ec-00_000660.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 891231..891632 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_000660.1 ID=Ec-00_000660.1|Name=Ec-00_000660.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=134bp
MTSSGDADIMERSSTSSGAEEDEAEGRVAAGDVDDELLRAASLEGAGNSS
GPFRRLSPDEEGSAAANSSSPASPDGGDGVEPRRAGGGGGDSDEQGLPAR
TIGARDEEEDTGGIVRGKGRAPVAAARENRKPR*
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spliced messenger RNA

>Ec-00_000660.1 ID=Ec-00_000660.1|Name=Ec-00_000660.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=402bp|location=Sequence derived from alignment at chr_00:891231..891632+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCTCCAGCGGCGATGCCGACATCATGGAGAGGTCAAGCACATCCAG
CGGGGCGGAGGAGGACGAGGCGGAAGGCCGGGTTGCCGCCGGCGATGTTG
ACGACGAGCTACTCCGAGCAGCCTCGCTGGAGGGCGCGGGCAACTCCTCC
GGTCCTTTCCGACGACTATCTCCCGACGAGGAAGGCTCCGCCGCCGCCAA
CTCGTCCTCGCCAGCAAGTCCTGACGGCGGCGACGGGGTCGAGCCGCGAC
GAGCGGGAGGCGGTGGCGGCGACAGCGACGAGCAAGGGCTGCCGGCTAGA
ACAATTGGTGCGAGGGACGAGGAAGAGGACACCGGTGGTATTGTCCGTGG
CAAAGGTCGAGCACCCGTCGCTGCTGCGAGAGAAAACAGGAAACCACGCT
GA
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protein sequence of Ec-00_000660.1

>Ec-00_000660.1 ID=Ec-00_000660.1|Name=Ec-00_000660.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=134bp
MTSSGDADIMERSSTSSGAEEDEAEGRVAAGDVDDELLRAASLEGAGNSS
GPFRRLSPDEEGSAAANSSSPASPDGGDGVEPRRAGGGGGDSDEQGLPAR
TIGARDEEEDTGGIVRGKGRAPVAAARENRKPR*
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mRNA from alignment at chr_00:891231..891632+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_000660.1 ID=Ec-00_000660.1|Name=Ec-00_000660.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=402bp|location=Sequence derived from alignment at chr_00:891231..891632+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGACCTCCAGCGGCGATGCCGACATCATGGAGAGGTCAAGCACATCCAG
CGGGGCGGAGGAGGACGAGGCGGAAGGCCGGGTTGCCGCCGGCGATGTTG
ACGACGAGCTACTCCGAGCAGCCTCGCTGGAGGGCGCGGGCAACTCCTCC
GGTCCTTTCCGACGACTATCTCCCGACGAGGAAGGCTCCGCCGCCGCCAA
CTCGTCCTCGCCAGCAAGTCCTGACGGCGGCGACGGGGTCGAGCCGCGAC
GAGCGGGAGGCGGTGGCGGCGACAGCGACGAGCAAGGGCTGCCGGCTAGA
ACAATTGGTGCGAGGGACGAGGAAGAGGACACCGGTGGTATTGTCCGTGG
CAAAGGTCGAGCACCCGTCGCTGCTGCGAGAGAAAACAGGAAACCACGCT
GA
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Coding sequence (CDS) from alignment at chr_00:891231..891632+

>Ec-00_000660.1 ID=Ec-00_000660.1|Name=Ec-00_000660.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=402bp|location=Sequence derived from alignment at chr_00:891231..891632+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGACCTCCAGCGGCGATGCCGACATCATGGAGAGGTCAAGCACATCCAG
CGGGGCGGAGGAGGACGAGGCGGAAGGCCGGGTTGCCGCCGGCGATGTTG
ACGACGAGCTACTCCGAGCAGCCTCGCTGGAGGGCGCGGGCAACTCCTCC
GGTCCTTTCCGACGACTATCTCCCGACGAGGAAGGCTCCGCCGCCGCCAA
CTCGTCCTCGCCAGCAAGTCCTGACGGCGGCGACGGGGTCGAGCCGCGAC
GAGCGGGAGGCGGTGGCGGCGACAGCGACGAGCAAGGGCTGCCGGCTAGA
ACAATTGGTGCGAGGGACGAGGAAGAGGACACCGGTGGTATTGTCCGTGG
CAAAGGTCGAGCACCCGTCGCTGCTGCGAGAGAAAACAGGAAACCACGCT
GA
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Synonyms
The feature 'Ec-00_000660.1' has the following synonyms
Synonym
Esi151_0004
Esi_151_0004