Ec-00_000540.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_000540.2
Unique NameEc-00_000540.2
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length298
Homology
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BLAST of Ec-00_000540.2 vs. uniprot
Match: D7FHV2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHV2_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 1.550e-37
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1 
Query:   31 MTSDPSLLNRTHLLGSKGGRGTAAAPSPHAFVHSPQVHMDVVVALMAQTVFVFHSTSPSSRWAFFLTAL 237
            MTSDPSLLNRTHLLGSKGGRGTAAAPSPHAFVHSPQVHMDVVVALMAQTVFVFHSTSPSSRWAFFLTAL
Sbjct:    1 MTSDPSLLNRTHLLGSKGGRGTAAAPSPHAFVHSPQVHMDVVVALMAQTVFVFHSTSPSSRWAFFLTAL 69
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BLAST of Ec-00_000540.2 vs. uniprot
Match: A0A6H5JUJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUJ8_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 6.140e-28
Identity = 60/69 (86.96%), Postives = 61/69 (88.41%), Query Frame = 1 
Query:   31 MTSDPSLLNRTHLLGSKGGRGTAAAPSPHAFVHSPQVHMDVVVALMAQTVFVFHSTSPSSRWAFFLTAL 237
            MTSDPSLLNRTHLL SK GRGTAAA  PHAFVHSPQV MDVV ALMA+TVFV HSTSPS RWAFFLTAL
Sbjct:    1 MTSDPSLLNRTHLLDSKRGRGTAAALPPHAFVHSPQVRMDVV-ALMARTVFVIHSTSPSCRWAFFLTAL 68
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BLAST of Ec-00_000540.2 vs. uniprot
Match: A0A6H5K6Y7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6Y7_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 3.740e-6
Identity = 27/28 (96.43%), Postives = 28/28 (100.00%), Query Frame = 2 
Query: 1748 GVLIVVHAVVVRPLTSHPYKAGTEHAGF 1831
            GVLIVVHAVVVRPLTSHPY+AGTEHAGF
Sbjct:  185 GVLIVVHAVVVRPLTSHPYEAGTEHAGF 212
The following BLAST results are available for this feature:
BLAST of Ec-00_000540.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FHV2_ECTSI1.550e-37100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUJ8_9PHAE6.140e-2886.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6Y7_9PHAE3.740e-696.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:744994..746828 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length1835
Hectar predicted targeting categorysignal peptide
Gene idEc-00_000540.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000540Ec-00_000540Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 744994..746828 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000540.2.1Ec-00_000540.2.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 744994..746828 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0005403UTR:Ec-00_000540.2Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 744994..745280 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000540.2CDS:Ec-00_000540.2Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 745281..746174 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0005405UTR:Ec-00_000540.2Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 746175..746828 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000540.2Ec-00_000540.2Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 745281..746174 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_000540.2 ID=Ec-00_000540.2|Name=Ec-00_000540.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=298bp
MPSFVGVRSLALLRATHASRSVRLTFTPTSARLSYEKPTLPGLLFSYYRS
MSFWLGVVSCGNSIISVLADEHPLRGAARTSVLYPCEPACIAGAGFSNVS
RVLRALGWMRQPREAPQRPHPKTLEGGTPCEAVVAGGGWRGDVSRSVCPP
SPRTRLASKRTCCHRGHDGVESGNIVCFVGGEGQASSSLALGERGGGRGI
CVQKVNPAVVAIICRLRQGSRDGQCEVVVVVNVWGSSFPDQSNRAKKGVN
YFLCCHSPSFAVKVESKPVLAAATCLLCALVDARARVFVAPRFPCEM*
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spliced messenger RNA

>Ec-00_000540.2 ID=Ec-00_000540.2|Name=Ec-00_000540.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1835bp|location=Sequence derived from alignment at chr_00:744994..746828- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
TGCGACACTAGCGGTGTATATTCGTGGCCGATGACGTCGGACCCTTCTCT
GTTGAACCGTACCCATTTGCTTGGTTCCAAAGGTGGGAGGGGAACGGCAG
CAGCGCCGTCCCCGCATGCTTTCGTCCATTCGCCCCAGGTACATATGGAT
GTTGTTGTTGCCTTGATGGCCCAAACCGTGTTTGTTTTTCATTCAACGTC
TCCCTCTAGTCGCTGGGCATTTTTTCTCACCGCTTTGTAGGAAGCGGACT
GTTTGTTGTTTGCCTTTTCTTACCTTGTCTCGTCTGGTGTGTTGCCTCGT
GTTTCCGGCCGGGCAAGTTTGACGACGTCCTTTCAGGGAGAAACGTGTGT
TTTGGTTCTCGAGCTGGTTGATTGTTGAGCTCCCTTGTTGTCTGCTGCTA
AATCGTCGCTGAAAAAGAGACCGCACAGACGTTCCCACGCTTGTTTTTTT
TAGGTTCGAGTTTATGCCACCTTGGCTGGCGCGTTCGGCAGGCTCATGTA
CAGCACATGGTGTGGTGGGCAATTATTCCCAACTAGCACTCCACCTTTTG
ACGCAGTGAATTGTCATGTTTTGAGGACCTAAATTCCTTGGAGAAAACGA
ATTGTCATGTTTTAGAATTTTTTTCATTTGGCGCAAGTCACCCGCGCGTA
GAAAATGCCGTCTTTCGTCGGTGTGCGATCCCTCGCTCTTCTCCGCGCTA
CACACGCATCCCGCTCCGTCCGACTGACATTCACTCCCACCAGCGCCAGA
TTAAGCTACGAGAAACCGACACTGCCTGGCCTTTTGTTTTCGTACTACCG
TAGCATGAGCTTCTGGTTGGGTGTTGTTTCGTGTGGGAACAGCATTATTA
GTGTCCTCGCTGATGAGCACCCTCTCCGTGGAGCAGCGAGAACGAGTGTT
CTTTATCCTTGCGAACCGGCGTGTATTGCAGGAGCGGGTTTCTCGAACGT
GTCACGCGTTTTAAGAGCGTTGGGTTGGATGCGCCAGCCAAGGGAGGCCC
CGCAGAGGCCACACCCGAAAACGCTCGAAGGAGGGACCCCTTGCGAAGCG
GTTGTCGCCGGGGGTGGTTGGAGGGGAGACGTGTCACGAAGCGTTTGTCC
GCCTTCGCCGAGAACGCGATTGGCGTCCAAGCGTACATGTTGCCACCGTG
GACATGACGGTGTCGAGAGCGGTAATATAGTCTGTTTTGTCGGAGGGGAA
GGCCAGGCGAGCTCGTCACTAGCACTCGGAGAGAGGGGGGGGGGAAGGGG
GATTTGTGTTCAGAAGGTCAATCCAGCGGTTGTGGCGATAATTTGTCGGT
TGAGACAAGGTTCTAGAGACGGGCAATGCGAAGTAGTGGTCGTGGTCAAT
GTTTGGGGATCAAGTTTTCCTGACCAAAGCAACAGAGCAAAGAAAGGTGT
AAACTATTTCCTTTGTTGTCATTCACCATCATTCGCTGTGAAGGTTGAAA
GCAAACCAGTTCTTGCAGCTGCGACTTGTCTGCTGTGTGCACTTGTTGAT
GCACGCGCGCGTGTTTTTGTGGCTCCACGGTTTCCTTGTGAGATGTGATT
TTTGACTGCAGCAAGTGTTTACCACTCAGTCGCGTGGTGGTCGACGTTGG
AGCTGCTTGACTGCTCCTGGACTTTCCGCCCGACAGCAGTAGAAGTAGGC
TCGCCGGGGGACGGCCCCATGTGGTAACGAAAGAAGAGTGTTTCCGCAGG
ATGAACAGACGTAATTGTACCAATGATGGGTTTGCACAGCCCCGAAGGGG
TGTACTCATAGTTGTGCATGCCGTAGTCGTTAGACCATTGACCTCGCATC
CCTACAAAGCCGGGACGGAGCACGCCGGGTTCTCA
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protein sequence of Ec-00_000540.2

>Ec-00_000540.2 ID=Ec-00_000540.2|Name=Ec-00_000540.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=298bp
MPSFVGVRSLALLRATHASRSVRLTFTPTSARLSYEKPTLPGLLFSYYRS
MSFWLGVVSCGNSIISVLADEHPLRGAARTSVLYPCEPACIAGAGFSNVS
RVLRALGWMRQPREAPQRPHPKTLEGGTPCEAVVAGGGWRGDVSRSVCPP
SPRTRLASKRTCCHRGHDGVESGNIVCFVGGEGQASSSLALGERGGGRGI
CVQKVNPAVVAIICRLRQGSRDGQCEVVVVVNVWGSSFPDQSNRAKKGVN
YFLCCHSPSFAVKVESKPVLAAATCLLCALVDARARVFVAPRFPCEM*
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mRNA from alignment at chr_00:744994..746828-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_000540.2 ID=Ec-00_000540.2|Name=Ec-00_000540.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1835bp|location=Sequence derived from alignment at chr_00:744994..746828- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
TGCGACACTAGCGGTGTATATTCGTGGCCGATGACGTCGGACCCTTCTCT
GTTGAACCGTACCCATTTGCTTGGTTCCAAAGGTGGGAGGGGAACGGCAG
CAGCGCCGTCCCCGCATGCTTTCGTCCATTCGCCCCAGGTACATATGGAT
GTTGTTGTTGCCTTGATGGCCCAAACCGTGTTTGTTTTTCATTCAACGTC
TCCCTCTAGTCGCTGGGCATTTTTTCTCACCGCTTTGTAGGAAGCGGACT
GTTTGTTGTTTGCCTTTTCTTACCTTGTCTCGTCTGGTGTGTTGCCTCGT
GTTTCCGGCCGGGCAAGTTTGACGACGTCCTTTCAGGGAGAAACGTGTGT
TTTGGTTCTCGAGCTGGTTGATTGTTGAGCTCCCTTGTTGTCTGCTGCTA
AATCGTCGCTGAAAAAGAGACCGCACAGACGTTCCCACGCTTGTTTTTTT
TAGGTTCGAGTTTATGCCACCTTGGCTGGCGCGTTCGGCAGGCTCATGTA
CAGCACATGGTGTGGTGGGCAATTATTCCCAACTAGCACTCCACCTTTTG
ACGCAGTGAATTGTCATGTTTTGAGGACCTAAATTCCTTGGAGAAAACGA
ATTGTCATGTTTTAGAATTTTTTTCATTTGGCGCAAGTCACCCGCGCGTA
GAAAATGCCGTCTTTCGTCGGTGTGCGATCCCTCGCTCTTCTCCGCGCTA
CACACGCATCCCGCTCCGTCCGACTGACATTCACTCCCACCAGCGCCAGA
TTAAGCTACGAGAAACCGACACTGCCTGGCCTTTTGTTTTCGTACTACCG
TAGCATGAGCTTCTGGTTGGGTGTTGTTTCGTGTGGGAACAGCATTATTA
GTGTCCTCGCTGATGAGCACCCTCTCCGTGGAGCAGCGAGAACGAGTGTT
CTTTATCCTTGCGAACCGGCGTGTATTGCAGGAGCGGGTTTCTCGAACGT
GTCACGCGTTTTAAGAGCGTTGGGTTGGATGCGCCAGCCAAGGGAGGCCC
CGCAGAGGCCACACCCGAAAACGCTCGAAGGAGGGACCCCTTGCGAAGCG
GTTGTCGCCGGGGGTGGTTGGAGGGGAGACGTGTCACGAAGCGTTTGTCC
GCCTTCGCCGAGAACGCGATTGGCGTCCAAGCGTACATGTTGCCACCGTG
GACATGACGGTGTCGAGAGCGGTAATATAGTCTGTTTTGTCGGAGGGGAA
GGCCAGGCGAGCTCGTCACTAGCACTCGGAGAGAGGGGGGGGGGAAGGGG
GATTTGTGTTCAGAAGGTCAATCCAGCGGTTGTGGCGATAATTTGTCGGT
TGAGACAAGGTTCTAGAGACGGGCAATGCGAAGTAGTGGTCGTGGTCAAT
GTTTGGGGATCAAGTTTTCCTGACCAAAGCAACAGAGCAAAGAAAGGTGT
AAACTATTTCCTTTGTTGTCATTCACCATCATTCGCTGTGAAGGTTGAAA
GCAAACCAGTTCTTGCAGCTGCGACTTGTCTGCTGTGTGCACTTGTTGAT
GCACGCGCGCGTGTTTTTGTGGCTCCACGGTTTCCTTGTGAGATGTGATT
TTTGACTGCAGCAAGTGTTTACCACTCAGTCGCGTGGTGGTCGACGTTGG
AGCTGCTTGACTGCTCCTGGACTTTCCGCCCGACAGCAGTAGAAGTAGGC
TCGCCGGGGGACGGCCCCATGTGGTAACGAAAGAAGAGTGTTTCCGCAGG
ATGAACAGACGTAATTGTACCAATGATGGGTTTGCACAGCCCCGAAGGGG
TGTACTCATAGTTGTGCATGCCGTAGTCGTTAGACCATTGACCTCGCATC
CCTACAAAGCCGGGACGGAGCACGCCGGGTTCTCA
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Coding sequence (CDS) from alignment at chr_00:744994..746828-

>Ec-00_000540.2 ID=Ec-00_000540.2|Name=Ec-00_000540.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=894bp|location=Sequence derived from alignment at chr_00:744994..746828- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCCGTCTTTCGTCGGTGTGCGATCCCTCGCTCTTCTCCGCGCTACACA
CGCATCCCGCTCCGTCCGACTGACATTCACTCCCACCAGCGCCAGATTAA
GCTACGAGAAACCGACACTGCCTGGCCTTTTGTTTTCGTACTACCGTAGC
ATGAGCTTCTGGTTGGGTGTTGTTTCGTGTGGGAACAGCATTATTAGTGT
CCTCGCTGATGAGCACCCTCTCCGTGGAGCAGCGAGAACGAGTGTTCTTT
ATCCTTGCGAACCGGCGTGTATTGCAGGAGCGGGTTTCTCGAACGTGTCA
CGCGTTTTAAGAGCGTTGGGTTGGATGCGCCAGCCAAGGGAGGCCCCGCA
GAGGCCACACCCGAAAACGCTCGAAGGAGGGACCCCTTGCGAAGCGGTTG
TCGCCGGGGGTGGTTGGAGGGGAGACGTGTCACGAAGCGTTTGTCCGCCT
TCGCCGAGAACGCGATTGGCGTCCAAGCGTACATGTTGCCACCGTGGACA
TGACGGTGTCGAGAGCGGTAATATAGTCTGTTTTGTCGGAGGGGAAGGCC
AGGCGAGCTCGTCACTAGCACTCGGAGAGAGGGGGGGGGGAAGGGGGATT
TGTGTTCAGAAGGTCAATCCAGCGGTTGTGGCGATAATTTGTCGGTTGAG
ACAAGGTTCTAGAGACGGGCAATGCGAAGTAGTGGTCGTGGTCAATGTTT
GGGGATCAAGTTTTCCTGACCAAAGCAACAGAGCAAAGAAAGGTGTAAAC
TATTTCCTTTGTTGTCATTCACCATCATTCGCTGTGAAGGTTGAAAGCAA
ACCAGTTCTTGCAGCTGCGACTTGTCTGCTGTGTGCACTTGTTGATGCAC
GCGCGCGTGTTTTTGTGGCTCCACGGTTTCCTTGTGAGATGTGA
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Synonyms
The feature 'Ec-00_000540.2' has the following synonyms
Synonym
Esi1123_0001
Esi_1123_0001