Ec-00_000530.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_000530.1
Unique NameEc-00_000530.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length210
Homology
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BLAST of Ec-00_000530.1 vs. uniprot
Match: D7FHV1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHV1_ECTSI)

HSP 1 Score: 397 bits (1021), Expect = 2.530e-139
Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 1 
Query:    1 MAKLMPNQWRTIAPIVGRTAAQCLQHYERLLDMAQDSGGAAGGEGGAAMADDPRRLRPGEIDPHPETKPARPDPIDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEAKRLATLQKRRELKAAGIEKTANRKRRKYIDYGKEIPFQRNAPAGFYDVSEEAQVAKKARQDPSFSTKEISCKNWRNTRWNKKMKGLPKKTNPKFRKS 627
            MAKLMPNQWRTIAPIVGRTAAQCLQHYERLLDMAQDSGGAAGGEGGAAMADDPRRLRPGEIDPHPETKPARPDPIDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEAKRLATLQKRRELKAAGIEKTANRKRRKYIDYGKEIPFQRNAPAGFYDVSEEAQVAKKARQDPSFSTKEISCKNWRNTRWNKKMKGLPKKTNPKFRKS
Sbjct:   26 MAKLMPNQWRTIAPIVGRTAAQCLQHYERLLDMAQDSGGAAGGEGGAAMADDPRRLRPGEIDPHPETKPARPDPIDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEAKRLATLQKRRELKAAGIEKTANRKRRKYIDYGKEIPFQRNAPAGFYDVSEEAQVAKKARQDPSFSTKEISCKNWRNTRWNKKMKGLPKKTNPKFRKS 234
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BLAST of Ec-00_000530.1 vs. uniprot
Match: A0A6H5L1Z3_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Z3_9PHAE)

HSP 1 Score: 335 bits (859), Expect = 2.730e-106
Identity = 178/179 (99.44%), Postives = 179/179 (100.00%), Query Frame = 1 
Query:    1 MAKLMPNQWRTIAPIVGRTAAQCLQHYERLLDMAQDSGGAAGGEGGAAMADDPRRLRPGEIDPHPETKPARPDPIDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEAKRLATLQKRRELKAAGIEKTANRKRRKYIDYGKEIPFQRNAPAGFYDVSEEAQVAKKARQDPSFSTK 537
            MAKLMPNQWRTIAPIVGRTAAQCLQHYERLLDMAQDSGGAAGGEGGAAMADDPRRLRPGEIDPHPETKPARPDPIDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEAKRLATLQKRRELKAAGIEKTANRKRRKYIDYGKEIPFQRNAPAGFYDVSEEAQ+AKKARQDPSFSTK
Sbjct:   74 MAKLMPNQWRTIAPIVGRTAAQCLQHYERLLDMAQDSGGAAGGEGGAAMADDPRRLRPGEIDPHPETKPARPDPIDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEAKRLATLQKRRELKAAGIEKTANRKRRKYIDYGKEIPFQRNAPAGFYDVSEEAQIAKKARQDPSFSTK 252
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BLAST of Ec-00_000530.1 vs. uniprot
Match: A0A835YNI3_9STRA (Cell division cycle 5-like protein-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNI3_9STRA)

HSP 1 Score: 248 bits (634), Expect = 1.490e-73
Identity = 135/177 (76.27%), Postives = 148/177 (83.62%), Query Frame = 1 
Query:    1 MAKLMPNQWRTIAPIVGRTAAQCLQHYERLLDMAQDSGGAAGGEGGAAMADDPRRLRPGEIDPHPETKPARPDPIDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEAKRLATLQKRRELKAAGIEKTANRKRRKYIDYGKEIPFQRNAPAGFYDVSEEAQVAKKARQDPSFS 531
            +AKLMPNQWRTIAPIVGRTA QCL+HYERLLDMAQ+       EG    A + RRLRPGEIDP PETKPA  DP+DMDEDEKEML EARARLANTRGKKAKRKAREKQLEEA+RLATLQKRRELKAAGIE+T  +++RK IDYGKEIPFQ NAPAGFYD + E +  KKA+ DP FS
Sbjct:   74 LAKLMPNQWRTIAPIVGRTAGQCLEHYERLLDMAQEK------EGDVEAAGEARRLRPGEIDPAPETKPAXXDPVDMDEDEKEMLQEARARLANTRGKKAKRKAREKQLEEARRLATLQKRRELKAAGIEQTMRQRKRKNIDYGKEIPFQMNAPAGFYDTATEREATKKAKMDPQFS 244
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BLAST of Ec-00_000530.1 vs. uniprot
Match: A0A7S2SCC5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SCC5_9STRA)

HSP 1 Score: 237 bits (605), Expect = 3.740e-70
Identity = 133/169 (78.70%), Postives = 145/169 (85.80%), Query Frame = 1 
Query:    1 MAKLMPNQWRTIAPIVGRTAAQCLQHYERLLDMAQDSGGAAGGEGGAAMADDPRRLRPGEIDPHPETKPARPDPIDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEAKRLATLQKRRELKAAGIEKTANRKRRKYIDYGKEIPFQRNAPAGFYDVSEEAQVAKK 507
            +AKL P+QWRTIAPIVGRTAAQC++ YE LLD AQ    AA GE   A A D RRLRPGEIDPHPETKPARPDPIDMDEDEKEML+EARARLANTRGKKAKRKAREKQLEEAKRLA LQKRRELKAAG+E+   R++RKYIDYG+EIPFQR AP+GFYDV +E Q  KK
Sbjct:   74 LAKLYPSQWRTIAPIVGRTAAQCMERYEALLDSAQ----AAAGEM-EASAQDARRLRPGEIDPHPETKPARPDPIDMDEDEKEMLAEARARLANTRGKKAKRKAREKQLEEAKRLANLQKRRELKAAGVERKLGRRKRKYIDYGEEIPFQRVAPSGFYDVEDERQRTKK 237
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BLAST of Ec-00_000530.1 vs. uniprot
Match: A0A7S2G092_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G092_9STRA)

HSP 1 Score: 236 bits (602), Expect = 1.060e-69
Identity = 130/174 (74.71%), Postives = 151/174 (86.78%), Query Frame = 1 
Query:    1 MAKLMPNQWRTIAPIVGRTAAQCLQHYERLLDMAQDSGGAAGGEGGAAMADDPRRLRPGEIDPHPETKPARPDPIDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEAKRLATLQKRRELKAAGIEKTANRKRRKYIDYGKEIPFQRNAPAGFYDVSEE----AQVAKKA 510
            +AK+ P+QWRTIAPIVGRTAAQC++HYE+LLD AQ++ G    EGG    DDPRRLRPGEIDPHPETKPARPDPIDMDEDEKEML+EARARLANTRGKKAKRKAREKQLEEAKRLAT+QKRRELKAAG+ +   R++RKY+DY +EIPFQR  PAGFYDV+ E    A+V+K++
Sbjct:   74 LAKIYPSQWRTIAPIVGRTAAQCMEHYEQLLDAAQEASGDI--EGGT---DDPRRLRPGEIDPHPETKPARPDPIDMDEDEKEMLAEARARLANTRGKKAKRKAREKQLEEAKRLATMQKRRELKAAGVTRGIGRRKRKYVDYRREIPFQRLVPAGFYDVAGEKERSAEVSKES 242
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BLAST of Ec-00_000530.1 vs. uniprot
Match: A0A3F2S176_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S176_9STRA)

HSP 1 Score: 234 bits (597), Expect = 1.710e-69
Identity = 127/172 (73.84%), Postives = 149/172 (86.63%), Query Frame = 1 
Query:    1 MAKLMPNQWRTIAPIVGRTAAQCLQHYERLLDMAQDSGGAAGGEGGAAMADDPRRLRPGEIDPHPETKPARPDPIDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEAKRLATLQKRRELKAAGIEKT---ANRKRRKYIDYGKEIPFQRNAPAGFYDVSEEAQVAKK 507
            +AKLMP+QWRTIAPIVGRTAAQC++HYERLLD AQ        + G  ++DDPRRLRPGEIDP+PE KPARPDP+DMDEDEKEMLSEARARLANT+GKKAKRKAREKQLEEA+RLA+LQK+RELKAAGI  +    ++K+RKYIDY +EIPF++ APAGFYDV+EE QV+ K
Sbjct:   70 LAKLMPSQWRTIAPIVGRTAAQCMEHYERLLDAAQQ-------KEGVEVSDDPRRLRPGEIDPNPENKPARPDPVDMDEDEKEMLSEARARLANTKGKKAKRKAREKQLEEARRLASLQKKRELKAAGIMSSNAKVHQKKRKYIDYAQEIPFEKKAPAGFYDVTEEKQVSSK 234
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BLAST of Ec-00_000530.1 vs. uniprot
Match: R1EXI3_EMIHU (Uncharacterized protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EXI3_EMIHU)

HSP 1 Score: 226 bits (577), Expect = 3.320e-69
Identity = 122/163 (74.85%), Postives = 141/163 (86.50%), Query Frame = 1 
Query:    1 MAKLMPNQWRTIAPIVGRTAAQCLQHYERLLDMAQDSGGAAGGEGGAAMADDPRRLRPGEIDPHPETKPARPDPIDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEAKRLATLQKRRELKAAGIEKTANRKRRKYIDYGKEIPFQRNAPAGFYDVSEE 489
            +AKLMP QWRTIAPIVGRTAAQCL+HYERLLD A   G +A G+  A+ ADDPRRLRPGEIDP+PE+KPARPDP+DMD+DEKEMLSEARARLANTRGKKAKRKAREKQLEE++RLA LQKRRELKAAGIE  +  ++ + IDY  EIPFQ+ APAG++D + E
Sbjct:   73 LAKLMPTQWRTIAPIVGRTAAQCLEHYERLLDQATRRGASADGD--ASAADDPRRLRPGEIDPNPESKPARPDPVDMDDDEKEMLSEARARLANTRGKKAKRKAREKQLEESRRLAALQKRRELKAAGIEVASRARKVRGIDYNSEIPFQKTAPAGYFDTTGE 233
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BLAST of Ec-00_000530.1 vs. uniprot
Match: A0A7S1UIQ4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UIQ4_9STRA)

HSP 1 Score: 225 bits (573), Expect = 3.660e-69
Identity = 122/164 (74.39%), Postives = 138/164 (84.15%), Query Frame = 1 
Query:    1 MAKLMPNQWRTIAPIVGRTAAQCLQHYERLLDMAQDSGGAAGGEGGAAMADDPRRLRPGEIDPHPETKPARPDPIDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEAKRLATLQKRRELKAAGIEKTANRKRRKYIDYGKEIPFQRNAPAGFYDVSEEA 492
            +AKLMPNQWRTIAP+VGRTA  CL  YERLLD AQD  G AGG+      DDPRRL+PGEIDP PETKPARPDPIDMDEDEKEMLSEARARLANT+GKKAKRKAREKQLEEA+R+A+LQKRRELKAAGI +   +++R++IDY  EIPF +  PAGF+D S EA
Sbjct:   74 LAKLMPNQWRTIAPLVGRTARMCLDRYERLLDAAQDGDGGAGGD-----VDDPRRLKPGEIDPAPETKPARPDPIDMDEDEKEMLSEARARLANTKGKKAKRKAREKQLEEARRMASLQKRRELKAAGIVQQRVQRKRQHIDYENEIPFHQKVPAGFFDTSNEA 232
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BLAST of Ec-00_000530.1 vs. uniprot
Match: A0A5D6YBZ6_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YBZ6_9STRA)

HSP 1 Score: 234 bits (596), Expect = 5.010e-69
Identity = 130/189 (68.78%), Postives = 153/189 (80.95%), Query Frame = 1 
Query:    1 MAKLMPNQWRTIAPIVGRTAAQCLQHYERLLDMAQDSGGAAGG------EGGAAMADDPRRLRPGEIDPHPETKPARPDPIDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEAKRLATLQKRRELKAAGI--EKTANRKRRKYIDYGKEIPFQRNAPAGFYDVSEEAQVAKKARQDPSFSTKEI 543
            +AKLMP QWRTIAPIVGRTAAQC++HYERLLD AQ   G  GG        G A  DDPRRLRPGEIDP PE KPARPDP+DMDEDEKEMLSEARARLANT+GKKAKRKAREKQLEEA+RLA LQKRRELKAAGI  +   + K+RK+IDY +EIPF++ APAGF+DV++E + + +AR D + + K++
Sbjct:   47 LAKLMPAQWRTIAPIVGRTAAQCMEHYERLLDAAQQREGLDGGASRATTSAGGAGTDDPRRLRPGEIDPAPENKPARPDPVDMDEDEKEMLSEARARLANTKGKKAKRKAREKQLEEARRLAALQKRRELKAAGIGGKVHVSAKKRKFIDYAREIPFEKAAPAGFFDVADERRASDRARLDATSAAKQL 235
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BLAST of Ec-00_000530.1 vs. uniprot
Match: A0A7S0G5Y5_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G5Y5_9RHOD)

HSP 1 Score: 221 bits (562), Expect = 6.950e-69
Identity = 129/181 (71.27%), Postives = 145/181 (80.11%), Query Frame = 1 
Query:    1 MAKLMPNQWRTIAPIVGRTAAQCLQHYERLLDMAQDS------GGAAGGEGGAAMADDPRRLRPGEIDPHPETKPARPDPIDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEAKRLATLQKRRELKAAGIEKTANRKRRKYIDYGKEIPFQRNAPAGFYDVSEEAQVAKKARQDPS 525
            +AK+MP QWRTIAPIVGRTAAQCL+HYE+LLD AQ +      G AA GE   A ADDPR+LRPGEIDP PE+KPARPDPIDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEAKRLA LQKRREL AAGI+    RK RK +DY +EIPF++    GF+D +EE   A+K R + S
Sbjct:   73 LAKIMPTQWRTIAPIVGRTAAQCLEHYEKLLDQAQKAEEDVQGGDAAAGE--FAGADDPRKLRPGEIDPQPESKPARPDPIDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEAKRLAHLQKRRELLAAGIKVRTFRKSRKDMDYTREIPFEKRPAPGFFDTTEEDLRAQKERLNAS 251
The following BLAST results are available for this feature:
BLAST of Ec-00_000530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHV1_ECTSI2.530e-139100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L1Z3_9PHAE2.730e-10699.44MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A835YNI3_9STRA1.490e-7376.27Cell division cycle 5-like protein-like protein n=... [more]
A0A7S2SCC5_9STRA3.740e-7078.70Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2G092_9STRA1.060e-6974.71Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A3F2S176_9STRA1.710e-6973.84Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
R1EXI3_EMIHU3.320e-6974.85Uncharacterized protein (Fragment) n=1 Tax=Emilian... [more]
A0A7S1UIQ4_9STRA3.660e-6974.39Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A5D6YBZ6_9STRA5.010e-6968.78Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A7S0G5Y5_9RHOD6.950e-6971.27Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:738515..743841 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score399.8
Seed ortholog evalue7.7e-109
Seed eggNOG ortholog2880.D7FHV1
Preferred nameCEF1
Length630
KEGG koko:K12860
KEGG Pathwayko03040,map03040
KEGG ModuleM00353,M00355
Hectar predicted targeting categoryother localisation
Gene idEc-00_000530.1
GOsGO:0000018,GO:0000019,GO:0000228,GO:0000350,GO:0000375,GO:0000377,GO:0000393,GO:0000398,GO:0000723,GO:0000781,GO:0000782,GO:0000783,GO:0000784,GO:0000974,GO:0000981,GO:0000988,GO:0000989,GO:0001067,GO:0001076,GO:0001134,GO:0001135,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003691,GO:0003697,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006275,GO:0006282,GO:0006355,GO:0006357,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007568,GO:0007569,GO:0008022,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008380,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010639,GO:0010948,GO:0016043,GO:0016070,GO:0016071,GO:0016233,GO:0016604,GO:0019219,GO:0019222,GO:0019899,GO:0022607,GO:0022613,GO:0022618,GO:0030154,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031627,GO:0031848,GO:0031974,GO:0031981,GO:0032069,GO:0032074,GO:0032200,GO:0032204,GO:0032205,GO:0032207,GO:0032208,GO:0032210,GO:0032211,GO:0032213,GO:0032214,GO:0032502,GO:0032768,GO:0032770,GO:0032991,GO:0032993,GO:0033036,GO:0033043,GO:0033044,GO:0033262,GO:0033365,GO:0033554,GO:0034502,GO:0034613,GO:0034622,GO:0034641,GO:0042162,GO:0042592,GO:0042802,GO:0042803,GO:0043047,GO:0043085,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043247,GO:0043565,GO:0043933,GO:0044085,GO:0044087,GO:0044092,GO:0044093,GO:0044212,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044877,GO:0045292,GO:0045738,GO:0045786,GO:0045910,GO:0045934,GO:0045950,GO:0046483,GO:0046983,GO:0048239,GO:0048518,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048869,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0050999,GO:0051000,GO:0051052,GO:0051053,GO:0051093,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051179,GO:0051252,GO:0051276,GO:0051336,GO:0051341,GO:0051346,GO:0051353,GO:0051641,GO:0051716,GO:0051726,GO:0060249,GO:0060255,GO:0061820,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070187,GO:0070198,GO:0070727,GO:0071006,GO:0071012,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0072695,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090329,GO:0090342,GO:0090344,GO:0090398,GO:0090657,GO:0097159,GO:0098505,GO:0098687,GO:0098847,GO:0140110,GO:1901360,GO:1901363,GO:1902494,GO:1902576,GO:1903506,GO:1903516,GO:1903517,GO:1903770,GO:1903824,GO:1904353,GO:1904354,GO:1904356,GO:1904357,GO:1904429,GO:1904430,GO:1904533,GO:1904534,GO:1905777,GO:1905778,GO:1905838,GO:1905839,GO:1990904,GO:2000104,GO:2000112,GO:2000113,GO:2000278,GO:2000279,GO:2000772,GO:2000773,GO:2001020,GO:2001021,GO:2001141,GO:2001251
EggNOG free text desc.RNA polymerase II transcription regulator recruiting activity
EggNOG OGsCOG5147@1,KOG0050@2759
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000530Ec-00_000530Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 738515..743841 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000530.1Ec-00_000530.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 738515..743841 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000530.1.5Ec-00_000530.1.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 738515..738608 -
Ec-00_000530.1.4Ec-00_000530.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 739310..739452 -
Ec-00_000530.1.3Ec-00_000530.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 741641..741767 -
Ec-00_000530.1.2Ec-00_000530.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 742543..742647 -
Ec-00_000530.1.1Ec-00_000530.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 743681..743841 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000530.1CDS:Ec-00_000530.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 738515..738608 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_000530.1 ID=Ec-00_000530.1|Name=Ec-00_000530.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=210bp
MAKLMPNQWRTIAPIVGRTAAQCLQHYERLLDMAQDSGGAAGGEGGAAMA
DDPRRLRPGEIDPHPETKPARPDPIDMDEDEKEMLSEARARLANTRGKKA
KRKAREKQLEEAKRLATLQKRRELKAAGIEKTANRKRRKYIDYGKEIPFQ
RNAPAGFYDVSEEAQVAKKARQDPSFSTKEISCKNWRNTRWNKKMKGLPK
KTNPKFRKS*
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spliced messenger RNA

>Ec-00_000530.1 ID=Ec-00_000530.1|Name=Ec-00_000530.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=630bp|location=Sequence derived from alignment at chr_00:738515..743841- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCAAGCTCATGCCCAACCAGTGGAGGACGATCGCCCCCATCGTGGG
GCGCACGGCCGCTCAGTGCCTGCAGCACTACGAGCGGCTGCTGGACATGG
CCCAGGATTCCGGCGGCGCCGCGGGGGGGGAGGGCGGGGCGGCGATGGCG
GATGACCCCAGGCGTTTGCGTCCGGGGGAGATCGACCCACACCCGGAGAC
GAAGCCCGCGAGACCCGATCCCATCGACATGGACGAAGACGAGAAGGAGA
TGCTCTCGGAGGCCAGGGCTCGTCTGGCCAACACCCGGGGCAAGAAGGCC
AAGCGTAAGGCCCGGGAGAAGCAGCTCGAGGAAGCCAAGCGCCTCGCCAC
GCTCCAGAAACGCCGGGAGCTCAAGGCTGCCGGCATCGAGAAGACGGCGA
ACCGCAAGCGCCGCAAGTACATCGACTACGGCAAGGAGATCCCCTTCCAG
AGGAACGCCCCCGCCGGTTTCTACGATGTGTCCGAAGAGGCGCAGGTCGC
CAAGAAGGCGAGGCAGGACCCCAGCTTTTCCACTAAGGAAATTTCCTGCA
AAAATTGGAGGAACACCAGATGGAACAAGAAGATGAAGGGGCTCCCCAAA
AAGACGAACCCCAAATTCCGAAAATCATGA
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protein sequence of Ec-00_000530.1

>Ec-00_000530.1 ID=Ec-00_000530.1|Name=Ec-00_000530.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=210bp
MAKLMPNQWRTIAPIVGRTAAQCLQHYERLLDMAQDSGGAAGGEGGAAMA
DDPRRLRPGEIDPHPETKPARPDPIDMDEDEKEMLSEARARLANTRGKKA
KRKAREKQLEEAKRLATLQKRRELKAAGIEKTANRKRRKYIDYGKEIPFQ
RNAPAGFYDVSEEAQVAKKARQDPSFSTKEISCKNWRNTRWNKKMKGLPK
KTNPKFRKS*
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mRNA from alignment at chr_00:738515..743841-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_000530.1 ID=Ec-00_000530.1|Name=Ec-00_000530.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=5327bp|location=Sequence derived from alignment at chr_00:738515..743841- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCCAAGCTCATGCCCAACCAGTGGAGGACGATCGCCCCCATCGTGGG
GCGCACGGCCGCTCAGTGCCTGCAGCACTACGAGCGGCTGCTGGACATGG
CCCAGGATTCCGGCGGCGCCGCGGGGGGGGAGGGCGGGGCGGCGATGGCG
GATGACCCCAGGTGAAAAGAACTGACCAAAATGAACTGAAACGGAAGCGA
AGGGGAAAAAAACGAGTGTCGGCTGATTCTGTGGAGGTCAGGGCTGAGAA
AATTGTGTGGGATGGTCTGTTATGTTGGTGAGAAGGGCTGACCGAAATGA
AAAGAGAAAGGAAATGAAAACACAAAAGTGCTGGCGGTTCTGCGCGGGTT
AAAGCTGAGAAGACAGTGAGGTCGGATGGTCCGTTCTGTTGGCGAGAGAG
CAGAAGATATTTTCCCGAACGTGTCTGTAGTCTTTCGGTGGTTGTATGCG
TATTTTCTACTCACTAGGCGTCGGATGATCCTATGAAATATGTCGGGATG
GCTAGGTGTGAGAGCAAAAAAAAACTTGTGTCATATTGGTCCTCTATAGG
TGAGAGCGGAGAAAAAAATACACCATGACCGTAGGCGCTGTTGCCGGCGG
CAACGGAGAGTGTAAAACTCCGAGCCACAGGCACAGCACGGCGAAGGTCT
TGGGGGTGTGACCCTACGTGTGCTGCACCGAAAAAGAACAAATTGGTGGC
GTGACCCTCATCGCACTCTAAGCACAGCAGCTGGAGTTTTTGCGTGACTC
GATTTGGCCGGCCCCTACGATGTCGCTCACCCGAACACAATTCAACGGCC
GGCCTCGTACAACGCGACCGGTGTGGTTTTGTTTACGCGGCCTCTGTTGT
CGCTGCTTCTTGACCTTGTGGGGAAAACAACGGCGGTATCCATCTAGTTG
GTGATTTTTTTTTGTCAGTTGTTTTTTCTTCCGTCATGGATGCAGGCGTT
TGCGTCCAGAGGACTACTGTGCGCGGCCTCATTTAGCAGTCTCTGCTTCT
TGACCGAGCACAATGCGAAGAAAACAACGGTACATTGAAGAATGATTTGG
TGAAATTTTGCGCTACTTTTCTTTTGCGTCATGCATGCAGGCGATTGCGT
CCGTAGCTGCCTGTTTCTTGATCGAGCCCAAACTGAAATGTTGTTGAATG
GTGTACGTCTCCTCGTTTGGGTTTTTTCGTCGTCATGTATACAGGCGTTT
GCGTCCGGGGGAGATCGACCCACACCCGGAGACGAAGCCCGCGAGACCCG
ATCCCATCGACATGGACGAAGACGAGAAGGAGATGCTCTCGGAGGCCAGG
TATTGTTGGATGTTCCATCTCACGCCGTCTGCTGTTGGGAGTATTGTTGG
TGTTGTTGCTGGCAATGCTGTTGTTATTGGCGGTGTTGTTGTTTTTTTGT
TGTTGTTGTTTTTGCTGGCGATGGTGGTGATAGTGGTGTTGCTGGTGGTG
GTGGTTGTCGTTGTTGATGTTGGTGGTGGTGTTGCTTTTGCTCTTGTTGT
GGTTGCTGCTGGTGCTGGTGCTGGCGCTGCTGTTGTTTTTGTTGTTGCTG
GTCTGATGCTGCTGTGGCGTTTGTCCCAAGATGGTGCACCAGCTAGTACG
GTATTCCTAGGGGTCGCCGTCATCATGGCGGGTTGTCGACGACCGCCCTT
TGTTGTTCTGCTCACGGCATGACGTCATCGTCACAATCGTCAACAGGGCT
TGTGTACGTATCATCATCGGGTTGTCGACATCGTCATGACCGCAACGTAC
TGCCATCGTCCGTCCGTATCAAGCTATGGGGTTGTGATCATGTCATATCG
TCCTCCGTCCTATTCAACGCTACATGGCCATCGTCGTCGGTGTTTTCACG
TTACATGTATTGCAGTAGCGTCATTAGTACGATGGCATGCCGTCTTCGTC
TCATGACCGACACAGAACAAAAAAACTCCAGAGCACCATTCGGTTATCGG
CATCGCCATGCGCATCATGGTGTCGCCGTCGTTTATCAAGCTACATTATA
ATAGTCGTTGTGATCGTGGCGTGTCGTCGTCGTGATCATCAGCACTATTT
GTACAACCGTAAAACCAATGCCAGGGCTCGTCTGGCCAACACCCGGGGCA
AGAAGGCCAAGCGTAAGGCCCGGGAGAAGCAGCTCGAGGAAGCCAAGCGC
CTCGCCACGCTCCAGAAACGCCGGGAGCTCAAGGCTGCCGGCATCGAGAA
GGTATGTGTGTTTGCTTGTGATGTTTGTGTTGCTGCTGTTGCGGCTGCTG
TGTCGAGAAGGTGTATACATCATCCGTACGTCGTGGTACCGACCGATTAT
TCACTTCGGAGATGCATTTGGTGGAAACACATCCAACCGTGTTAGCGTAG
CATGGTTGTTGCTCGTGGTTATGTGTTGCTGTTGCTGCTGCTGCTGCTGC
TGTTGCTGTATACATGGCGTGTACAGAGTTGCCGCTGTTCCTCCCTCTGT
TCTGTGCTGCTTGCCGCTGTTGTCATCTTGACAGCATGCCGCCCGAGTGG
CTGGTGCTGTCCTTGCCATCCTTGTCCTCCTAATGTAACAGTTGGGGCGC
ATCTGCGCTGCCTGCCTGGGTAGACCACATGAACCCCGACTTGGACTTGT
CCCGGCTTCGTTGGGGCTAACCCCCCCCCCCCCCCCCCCCCCTTGGGGAA
ACCCCACCCCGCCCCCTTCAAGGGGGCGGGTTTGCGACTCCCCGAAAAAG
GGGAGAAAAGGCACCCCCCCCCCCTTTTTTCCCCACTTTTTAAACCCCGT
TATTTCCCCCCCCCCCCCCCTTTGGGTTCCCCCCGGGGTTGGGGTTTTTC
CCCCTCGCAACAACGGTGGAAAAAAAACCCCCCCCCCCCGGGTTTTCCCT
CGGGGGTTTGGGTTTTTCCGCCTGGGGACCCCATTGTGAAAAAAAGCCCC
CCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
TAAATTTGGGATAAAGGTTTTTTTGGACCATCTTTAATTACCCCCCCCCC
CCCCCCCTCGCTGTGGACTACCAAACGACTGCTGTGGTTGTATCTCAAAC
CGGTGTCCTCTCTTTGATTGCATGTATTTGTTCTAATAGTTTTGGAAATC
AAGTTTTTACTCTATATAATTGCGTCCCCAAAACTGAGAAAATACAAAAC
ACCCACAACGAGAACAAACATCACCCAATGTTGTATTTCACCATTTTAAT
GAGAAATTGGGGCCCATTTTTTTTTTTTTTCGCGCGCAGACGGCGAACCG
CAAGCGCCGCAAGTACATCGACTACGGCAAGGAGATCCCCTTCCAGAGGA
ACGCCCCCGCCGGTTTCTACGATGTGTCCGAAGAGGCGCAGGTCGCCAAG
AAGGCGAGGCAGGACCCCAGCTTTTCCACTAAGTGAGTCGTGTTGTTGTT
GTTGCTGTTGTTGCTGTTGTTGCTGTTGCTGTTGCTGTTGTTGTTGTTGT
TGTTGTTGTTGCTGTTGCTGGTGTTGTTGTTGTTGTTGTTGTTGTTGCTG
GTGTTGCTGTTGCTGTGGCTGTTGTTGTTGTTGTTGTTGTTGCTGCTGCT
GCTGTCATAGTTGTTGTTGTTGCTCTGCTGGTGTTGTTGTTGTTGTTGTT
GTTGTTGTTGTTGCTGCTGCTGCTGTTGTTGTTATAGTTGTTGTTGTTGC
TCTGCTGGTGCTGCTGCTGTTGTTGTTGCTGCTGTTGTTGCTACTGCTGC
TGCTGCTGTTATTGTGGTTGAAGTGTGTTGTTGTTTTTCTCTTTTTTTTG
GTTTTTGTGGTTCAGACTGTTGTTGGTGCTGTTGTTGCTGTTGTCTTCAC
ATTAATTGCCGTTCCGGGGTCTGCTCATGGCCACCTTTGAACGTCGTTTG
GGGCTCCCGTATGCAAGGAAGTAAGCACAAGATGCCGAACACTCTTAGCA
GGATGCAGCGCACCCTCCATGCGGCTCGCCGAATACCTCACGGCGCTAAG
GTGTGAGAGCCTGGTCCGGCGTGCTCCGTCCTGACATTGTAGGGATGCGA
GGTCAATGGTCTAACGACTGCTGCATGCACGGCTGTGAGTACCCCTCCCC
CCCCCCCCAAACCCCCCCCGCGGGCGCTTTGAGGGAAATTTCCTGCAAAA
ATTGGAGGAACACCAGATGGAACAAGAAGATGAAGGGGCTCCCCAAAAAG
ACGAACCCCAAATTCCGAAAATCATGA
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Coding sequence (CDS) from alignment at chr_00:738515..743841-

>Ec-00_000530.1 ID=Ec-00_000530.1|Name=Ec-00_000530.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=630bp|location=Sequence derived from alignment at chr_00:738515..743841- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCCAAGCTCATGCCCAACCAGTGGAGGACGATCGCCCCCATCGTGGG
GCGCACGGCCGCTCAGTGCCTGCAGCACTACGAGCGGCTGCTGGACATGG
CCCAGGATTCCGGCGGCGCCGCGGGGGGGGAGGGCGGGGCGGCGATGGCG
GATGACCCCAGGCGTTTGCGTCCGGGGGAGATCGACCCACACCCGGAGAC
GAAGCCCGCGAGACCCGATCCCATCGACATGGACGAAGACGAGAAGGAGA
TGCTCTCGGAGGCCAGGGCTCGTCTGGCCAACACCCGGGGCAAGAAGGCC
AAGCGTAAGGCCCGGGAGAAGCAGCTCGAGGAAGCCAAGCGCCTCGCCAC
GCTCCAGAAACGCCGGGAGCTCAAGGCTGCCGGCATCGAGAAGACGGCGA
ACCGCAAGCGCCGCAAGTACATCGACTACGGCAAGGAGATCCCCTTCCAG
AGGAACGCCCCCGCCGGTTTCTACGATGTGTCCGAAGAGGCGCAGGTCGC
CAAGAAGGCGAGGCAGGACCCCAGCTTTTCCACTAAGGAAATTTCCTGCA
AAAATTGGAGGAACACCAGATGGAACAAGAAGATGAAGGGGCTCCCCAAA
AAGACGAACCCCAAATTCCGAAAATCATGA
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Synonyms
The feature 'Ec-00_000530.1' has the following synonyms
Synonym
Esi1122_0001
Esi_1122_0001