Ec-00_000500.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_000500.2
Unique NameEc-00_000500.2
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length101
Homology
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BLAST of Ec-00_000500.2 vs. uniprot
Match: D7FHU7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHU7_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 3.100e-29
Identity = 63/71 (88.73%), Postives = 65/71 (91.55%), Query Frame = 2 
Query:   20 LALNGQQAVGDAARVCNSLLRTNARALGDSRLSLSRSVTQLELLNARMDGTARGFAKSFGAGWHRTEGGGT 232
            L L   + + DAARVCNSLLRTNARALGDSRLSLSRSVTQLELLNARMDGTARGFAKSFGAGWHRTEGGGT
Sbjct:    8 LPLTASKPLEDAARVCNSLLRTNARALGDSRLSLSRSVTQLELLNARMDGTARGFAKSFGAGWHRTEGGGT 78
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BLAST of Ec-00_000500.2 vs. uniprot
Match: A0A6H5JR72_9PHAE (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR72_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 4.920e-22
Identity = 60/71 (84.51%), Postives = 63/71 (88.73%), Query Frame = 2 
Query:   20 LALNGQQAVGDAARVCNSLLRTNARALGDSRLSLSRSVTQLELLNARMDGTARGFAKSFGAGWHRTEGGGT 232
            L L   + + DAARVCNSLLRTNARALGDSRLSLSRSVTQLELLNARMDGTARGFAKSFGAG HR +GGGT
Sbjct:  794 LPLTASKPLEDAARVCNSLLRTNARALGDSRLSLSRSVTQLELLNARMDGTARGFAKSFGAGLHRAKGGGT 864
The following BLAST results are available for this feature:
BLAST of Ec-00_000500.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FHU7_ECTSI3.100e-2988.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JR72_9PHAE4.920e-2284.51Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:666368..668454 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length1785
Hectar predicted targeting categoryother localisation
Gene idEc-00_000500.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000500Ec-00_000500Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 666368..668454 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000500.2.1Ec-00_000500.2.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 666368..666418 +
Ec-00_000500.2.2Ec-00_000500.2.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 666721..668454 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0005005UTR:Ec-00_000500.2Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 666368..666418 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000500.2CDS:Ec-00_000500.2Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 668151..668453 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0005003UTR:Ec-00_000500.2Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 668454..668454 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000500.2Ec-00_000500.2Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 668151..668453 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_000500.2 ID=Ec-00_000500.2|Name=Ec-00_000500.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=101bp
MMLACHWSCASQRLDRDLEEVLLLFASARVGGRVPRGALDRRRLPLVMVG
SSCTQVVQPLADSLSIGLEFLLWPTAVCGKNNLTKKIGSIIISAEANFFL
R
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spliced messenger RNA

>Ec-00_000500.2 ID=Ec-00_000500.2|Name=Ec-00_000500.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1785bp|location=Sequence derived from alignment at chr_00:666368..668454+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGCGAGCGCTCCGGAGCTTGCCCTTAACGGCCAGCAAGCCGTTGGA
GGACGCGGCTCGTGTGTGCAACTCCCTCTTGAGAACCAACGCCCGAGCTC
TGGGTGACAGCCGTTTATCGCTTTCGCGGTCTGTCACCCAGCTTGAGCTG
TTGAACGCTCGCATGGACGGTACCGCCAGAGGTTTCGCGAAATCCTTCGG
TGCGGGTTGGCATCGCACGGAGGGGGGGGGCACCTAGGTGGAGAGGGGGG
TGGAGAGGGGGGGGGGGGGGGTACGTCGACGTTGTGGTGGCTCCTGGCCC
AGACAAGAGGATGGAACAATTTTAACAGTTTTGTGCGCTGGGGGCCGGAC
ATCGCGACGTCAAGCGTTATGGCAGGGTCGCTCGCAAGTTCTTTGTCGGG
GCTGGGTAGGTTCGTCGGCGGGCTGCTGTGCTTTCGTACGTGCGCGATCA
GCTGTTTTTCCGGCGTGTACTCGTAGGCAGTATTTCGTATTTCAGTATTT
CGCCGGCCGAGGAAGGCGTGTAGAGGCCACTGATTCCGCCGCCGCTAAGC
AATACAGTACCAGTATAAGACAAGCCTGATTTTTTAAGTTATGTATGTAG
CTTTACGCAGTGTCTGCCCTTTGAACGAGCGTTTGGTGGTGGACTGCTGT
CCAGCGGTATATTCCTCCCCAATGTAGGGGTGCATGTTTCCCGGTGTGGC
GGGCGAATCGAACGGCGGGTGCGGACTTGCTTGTCGAAGAGATCACACAG
TAGCAAGGTATTTTTAGAAAACTTGGCTGGTGCCTGTCCATCTCTCGCGG
GAATTGTTTTCACGCGGATCCTCATTTTTTTTTTATTTGTATCCGGGTGT
GTGTGCGGTCATACACCGCTATTCGTTCTGGGCTCTGGGCTTGCGGGCCG
CCGTGGGTGTGTTAGGGTTGTGATTAGGATCGTGAAGTGCACTCTGTTCG
TACCGCTCTCTCCTTACATGAGCGTCGACGTTAAGGGGGAGCCATCCTCG
CGATCATTTTCGCGGTACTTAAGCTCTCCGCAGGGTGTGCACCCTACTGT
CCTACCAACGTAGATGAAATACTTTTGTGTCCCCTATCCCCTATCCGCGT
AGGTAGGTGGTCCGAGAGTGTTCGAATACGCCTTGATTTGTTTTGGTTGC
TGTCGAATTGGTTCGGAGGAAACAGGAGTTGTTGCTGCTGTCGTTGGCCG
GGTGATTTTCTGTCACTTGTTTGTGTATCCGCTCTTATGTAGCCGTATTG
GTTGCGATTGGCTTTAAACTAAATAAGTCTACACAGGGTTTGAAGAAGGC
AACGTTTTTTACGATCCACCCAATACCCCAAAACTAGAAAAAGGGGTGTA
TCTGAACACCGAACACGAGGAGACCGGTTCAGGGTTGCGTCGGAGTCAAG
GGCGAGGGCCGCGCACCCGACCACCCACACATCAATCGATCTTGCTCTTT
TCCTCCGACGACGCCCCGGGTGTCTTTGGAAATGATGTTGGCGTGCCACT
GGTCCTGTGCGTCTCAACGTCTCGACCGCGATCTGGAGGAAGTCCTTTTG
CTTTTTGCGAGTGCACGGGTAGGGGGGCGAGTCCCGAGGGGAGCACTCGA
CAGGAGAAGGTTACCGTTGGTGATGGTAGGGTCATCCTGCACGCAGGTCG
TGCAACCCCTTGCCGATTCTCTTTCAATAGGGCTTGAGTTTCTGCTGTGG
CCAACTGCTGTGTGTGGCAAAAATAATCTCACTAAAAAAATCGGAAGCAT
TATTATCTCCGCAGAAGCAAACTTTTTTCTCCGGA
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protein sequence of Ec-00_000500.2

>Ec-00_000500.2 ID=Ec-00_000500.2|Name=Ec-00_000500.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=101bp
MMLACHWSCASQRLDRDLEEVLLLFASARVGGRVPRGALDRRRLPLVMVG
SSCTQVVQPLADSLSIGLEFLLWPTAVCGKNNLTKKIGSIIISAEANFFL
R
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mRNA from alignment at chr_00:666368..668454+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_000500.2 ID=Ec-00_000500.2|Name=Ec-00_000500.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2087bp|location=Sequence derived from alignment at chr_00:666368..668454+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGGGCGAGCGCTCCGGAGCTTGCCCTTAACGGCCAGCAAGCCGTTGGA
GGTACGGCTATCCACGACTCTTTGTGATGCTCTTTTCTCGGAGGGGTGCG
GTGGAGTGAGAGGGCGATTATGTCCCCTCTTTTTCTCGTGCTTCGTTGAC
GTTCAAAGGCCGCTTGACCTAGCATTTTCGGCCGGCTTATGAAATGTTTC
GACCACGCTGGGACCCCGCACGATTCGGTTTGGCTACTGGCTACAAAGTA
CCTCGGTGCTTTCGAGCGTTTGACTTTGACGTGTTTGTTTCCCTTGTCTT
GCAATTTGACCCCTCGCCGCCCTTCCCACCTCCCGTCCTCCCCTTCGAAC
CAGGACGCGGCTCGTGTGTGCAACTCCCTCTTGAGAACCAACGCCCGAGC
TCTGGGTGACAGCCGTTTATCGCTTTCGCGGTCTGTCACCCAGCTTGAGC
TGTTGAACGCTCGCATGGACGGTACCGCCAGAGGTTTCGCGAAATCCTTC
GGTGCGGGTTGGCATCGCACGGAGGGGGGGGGCACCTAGGTGGAGAGGGG
GGTGGAGAGGGGGGGGGGGGGGGTACGTCGACGTTGTGGTGGCTCCTGGC
CCAGACAAGAGGATGGAACAATTTTAACAGTTTTGTGCGCTGGGGGCCGG
ACATCGCGACGTCAAGCGTTATGGCAGGGTCGCTCGCAAGTTCTTTGTCG
GGGCTGGGTAGGTTCGTCGGCGGGCTGCTGTGCTTTCGTACGTGCGCGAT
CAGCTGTTTTTCCGGCGTGTACTCGTAGGCAGTATTTCGTATTTCAGTAT
TTCGCCGGCCGAGGAAGGCGTGTAGAGGCCACTGATTCCGCCGCCGCTAA
GCAATACAGTACCAGTATAAGACAAGCCTGATTTTTTAAGTTATGTATGT
AGCTTTACGCAGTGTCTGCCCTTTGAACGAGCGTTTGGTGGTGGACTGCT
GTCCAGCGGTATATTCCTCCCCAATGTAGGGGTGCATGTTTCCCGGTGTG
GCGGGCGAATCGAACGGCGGGTGCGGACTTGCTTGTCGAAGAGATCACAC
AGTAGCAAGGTATTTTTAGAAAACTTGGCTGGTGCCTGTCCATCTCTCGC
GGGAATTGTTTTCACGCGGATCCTCATTTTTTTTTTATTTGTATCCGGGT
GTGTGTGCGGTCATACACCGCTATTCGTTCTGGGCTCTGGGCTTGCGGGC
CGCCGTGGGTGTGTTAGGGTTGTGATTAGGATCGTGAAGTGCACTCTGTT
CGTACCGCTCTCTCCTTACATGAGCGTCGACGTTAAGGGGGAGCCATCCT
CGCGATCATTTTCGCGGTACTTAAGCTCTCCGCAGGGTGTGCACCCTACT
GTCCTACCAACGTAGATGAAATACTTTTGTGTCCCCTATCCCCTATCCGC
GTAGGTAGGTGGTCCGAGAGTGTTCGAATACGCCTTGATTTGTTTTGGTT
GCTGTCGAATTGGTTCGGAGGAAACAGGAGTTGTTGCTGCTGTCGTTGGC
CGGGTGATTTTCTGTCACTTGTTTGTGTATCCGCTCTTATGTAGCCGTAT
TGGTTGCGATTGGCTTTAAACTAAATAAGTCTACACAGGGTTTGAAGAAG
GCAACGTTTTTTACGATCCACCCAATACCCCAAAACTAGAAAAAGGGGTG
TATCTGAACACCGAACACGAGGAGACCGGTTCAGGGTTGCGTCGGAGTCA
AGGGCGAGGGCCGCGCACCCGACCACCCACACATCAATCGATCTTGCTCT
TTTCCTCCGACGACGCCCCGGGTGTCTTTGGAAATGATGTTGGCGTGCCA
CTGGTCCTGTGCGTCTCAACGTCTCGACCGCGATCTGGAGGAAGTCCTTT
TGCTTTTTGCGAGTGCACGGGTAGGGGGGCGAGTCCCGAGGGGAGCACTC
GACAGGAGAAGGTTACCGTTGGTGATGGTAGGGTCATCCTGCACGCAGGT
CGTGCAACCCCTTGCCGATTCTCTTTCAATAGGGCTTGAGTTTCTGCTGT
GGCCAACTGCTGTGTGTGGCAAAAATAATCTCACTAAAAAAATCGGAAGC
ATTATTATCTCCGCAGAAGCAAACTTTTTTCTCCGGA
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Coding sequence (CDS) from alignment at chr_00:666368..668454+

>Ec-00_000500.2 ID=Ec-00_000500.2|Name=Ec-00_000500.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=303bp|location=Sequence derived from alignment at chr_00:666368..668454+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGATGTTGGCGTGCCACTGGTCCTGTGCGTCTCAACGTCTCGACCGCGA
TCTGGAGGAAGTCCTTTTGCTTTTTGCGAGTGCACGGGTAGGGGGGCGAG
TCCCGAGGGGAGCACTCGACAGGAGAAGGTTACCGTTGGTGATGGTAGGG
TCATCCTGCACGCAGGTCGTGCAACCCCTTGCCGATTCTCTTTCAATAGG
GCTTGAGTTTCTGCTGTGGCCAACTGCTGTGTGTGGCAAAAATAATCTCA
CTAAAAAAATCGGAAGCATTATTATCTCCGCAGAAGCAAACTTTTTTCTC
CGG
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Synonyms
The feature 'Ec-00_000500.2' has the following synonyms
Synonym
Esi1109_0001
Esi_1109_0001