Ec-00_000260.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_000260.1
Unique NameEc-00_000260.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length258
Homology
BLAST of Ec-00_000260.1 vs. uniprot
Match: D7FHA6_ECTSI (Similar to Calcium/calmodulin-dependent protein kinase type IV (CaMK IV) (CAM kinase-GR) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA6_ECTSI)

HSP 1 Score: 277 bits (708), Expect = 1.990e-92
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 1
Query:    1 MKGGSSLVRWIERAGKPEMYATKVFNTLNREHGKLLSAELRVLLSVDCPCIIKFYGAWDDQNYVNLVLEAMWLGSLFDMIYVTQSSCFSCPPGVLRWRAGSDRAGGPLHNHRDERAILAIDFQIFWGLE 387
            MKGGSSLVRWIERAGKPEMYATKVFNTLNREHGKLLSAELRVLLSVDCPCIIKFYGAWDDQNYVNLVLEAMWLGSLFDMIYVTQSSCFSCPPGVLRWRAGSDRAGGPLHNHRDERAILAIDFQIFWGLE
Sbjct:    1 MKGGSSLVRWIERAGKPEMYATKVFNTLNREHGKLLSAELRVLLSVDCPCIIKFYGAWDDQNYVNLVLEAMWLGSLFDMIYVTQSSCFSCPPGVLRWRAGSDRAGGPLHNHRDERAILAIDFQIFWGLE 129          
BLAST of Ec-00_000260.1 vs. uniprot
Match: D7FHA7_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA7_ECTSI)

HSP 1 Score: 269 bits (688), Expect = 5.110e-89
Identity = 130/140 (92.86%), Postives = 133/140 (95.00%), Query Frame = 1
Query:  370 IFWGLE------YLHSMGIVHRDVKPSNILANTCGSVKLADFGTALPLAEKTNDVMGTFRYMPPENAPREKGDVWAAGLVVAELFAHDVPFKSCGTHVEMAQLLDESDNDTLITHVLPKRSPVPESITRLVNSRTYRSCC 771
            ++WG +      YLHSMGIVHRDVKPSNILANTCGSVKLADFGTALPLAEKTNDVMGTFRYMPPENAPREKGDVWAAGLVVAELFAHDVPFKSCGTHVEMAQLLDESDNDTLITHVLPKRSPVPESITRLVNSRTYRSCC
Sbjct:   15 LYWGAKIRRHKGYLHSMGIVHRDVKPSNILANTCGSVKLADFGTALPLAEKTNDVMGTFRYMPPENAPREKGDVWAAGLVVAELFAHDVPFKSCGTHVEMAQLLDESDNDTLITHVLPKRSPVPESITRLVNSRTYRSCC 154          
BLAST of Ec-00_000260.1 vs. uniprot
Match: A0A7S0SXD7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SXD7_9STRA)

HSP 1 Score: 120 bits (300), Expect = 9.230e-29
Identity = 79/231 (34.20%), Postives = 112/231 (48.48%), Query Frame = 1
Query:    4 KGGSSLVRWIERAGKPEMYATKVFNTLNREHGKLLSAELRVLLSVDCPCIIKFYGAWDDQNYVNLVLEAMWLGSLFDMIYVTQSSCFSCPPGVLRWRAGSDRAGGPLHNHRDERAILAIDFQIFWGLEYLHSMGIVHRDVKPSNILANTCGSVKLADFGTALPLAEKT---NDVMGTFRYMPPENAPREK----GDVWAAGLVVAELFAHDVPFKSCGTHVEMAQLLDESD 675
            +G SS+V +   +      A KV N  +R     L  E+  L    CP +I FYGA+  +  + + LE M  GSL +++                     D+ G P+     ERA+  I FQI WGL Y+     VHRDVKPSN+L N+ G VK++DFG +  L          +GTF+YM PE    +      D+W+ GLVV E    + P+  C   +EMAQ + E+D
Sbjct:   65 RGCSSIVIYGIHSPTGTPLALKVINLFDRSKRDQLIREIATLYDAQCPNLITFYGAFYREGAITIALEYMDGGSLANVL---------------------DQVG-PI----PERALAGISFQILWGLAYMKHDKRVHRDVKPSNLLINSKGEVKVSDFGVSAELQTSIAMCGTFVGTFKYMSPERIRNQPYSYASDIWSFGLVVMECATGNYPYVECSNCIEMAQTILETD 269          
BLAST of Ec-00_000260.1 vs. uniprot
Match: A0A7S1Z3W8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z3W8_9STRA)

HSP 1 Score: 119 bits (298), Expect = 4.220e-28
Identity = 81/228 (35.53%), Postives = 121/228 (53.07%), Query Frame = 1
Query:   46 KPEMYATKVFNTL-NREHGKLLSAELRVLLSVDCPCIIKFYGAW--DDQNYVNLVLEAMWLGSLFDMIYV---TQSSCFSCPPGVLRWRAGSDRAGGPLHNHRDERAILAIDFQIFWGLEYLHSMGIVHRDVKPSNILANTCGSVKLADFGTALP--LAEKTN-DVMGTFRYMPPENAPRE----KGDVWAAGLVVAELFAHDVPFKSCGTHVEMAQLLDESDNDTLI 690
            +P   A K+F    +++  ++L  ELR L S++C C++   GA+  DD+  V LVLE M  GSL  ++     T SS  +    +    +   R G P      E+A  +I +Q+ WGL YLH   ++HRDVKP N+L NT G VKL+DFG A    + ++ N  V+GT RYM PE    +      D+W+ GLV+ E      PF+   + VE+   ++E+  D  I
Sbjct:   77 RPTHMALKMFPIRRDKKRREMLLKELRSLCSLECDCLVTLIGAFFDDDEGTVTLVLEYMDRGSLGSLLGSDPGTNSSTSNHLSLISHVESNLGRNGLP------EKATASIAYQMLWGLGYLHHENMIHRDVKPGNVLVNTRGEVKLSDFGIASQREVGQEMNVTVVGTTRYMSPERLRAKPYGSSSDLWSLGLVLLECCTGKSPFEDVTSQVELLLTVEETSADEWI 298          
BLAST of Ec-00_000260.1 vs. uniprot
Match: A0A448Z319_9STRA (Protein kinase domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z319_9STRA)

HSP 1 Score: 115 bits (288), Expect = 2.670e-26
Identity = 73/220 (33.18%), Postives = 113/220 (51.36%), Query Frame = 1
Query:   82 LNREHGKLLSAELRVLLSVDCPCIIKFYGAWDDQNYVNLVLEAMWLGSLFDMIYVTQSSCFSCPPGVLRWRAG------SDRAGGPLHNHRDERAILAIDFQIFWGLEYLHSMGIVHRDVKPSNILANTCGSVKLADFGTALPLAEKT----NDVMGTFRYMPPENA---PREKG-DVWAAGLVVAELFAHDVPFKSCGTHVEMAQLLDESDNDTLITHV 699
            ++ +  K+L  EL+ L  +    ++ F+GA+ + + V LV+E M  GSL                   +WR        SD         + ER +++I +Q+  GLEYLHS  I+HRD+KP NIL N+ G VKL DFG +    E        V+GT R+M PE     P  K  D+W+ GLV+ EL+  ++PFK C + V +   ++E+  D L++ +
Sbjct:  146 ISEQRKKMLLKELKALSQLQSKALVGFHGAFLEDDAVVLVMEYMDGGSL------------------EQWRQKKKTDNISDLLSTKSSRLKRERFVVSIAYQVLKGLEYLHSQRIIHRDIKPGNILLNSRGEVKLCDFGISSLYGEDDASLQTTVVGTSRFMSPERLRAKPYGKASDIWSFGLVILELWKEEIPFKECASIVSLVITVEETSLDDLLSGI 347          
BLAST of Ec-00_000260.1 vs. uniprot
Match: A0A1E7FFH1_9STRA (Kinase-like protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FFH1_9STRA)

HSP 1 Score: 108 bits (271), Expect = 4.710e-25
Identity = 70/206 (33.98%), Postives = 106/206 (51.46%), Query Frame = 1
Query:  103 LLSAELRVLLSVDCPCIIKFYGAW-DDQNYVNLVLEAMWLGSLFDMIYVTQSSCFSCPPGVLRWRAGSDRAGGPLHNHRDERAILAIDFQIFWGLEYLHSMGIVHRDVKPSNILANTCGSVKLADFGTALPLAEKTND----VMGTFRYMPPENA---PREKG-DVWAAGLVVAELFAHDVPFKSCGTHVEMAQLLDESDNDTLIT 693
            +L  ELR L  +    ++ F+GA+  D + V LV+E M +GSL                   +WR  +        +  +E    +I +Q+  GLEYLHS  I+HRD+KP NIL NT G+VKL DFG      +  +     V+GT R+M PE     P  K  D+W+ GLV+ EL+   +PF+ C + V +   ++E+  D L++
Sbjct:    1 MLIKELRTLCQLQSEALVGFHGAFLHDDDAVVLVMEYMDIGSL------------------EQWRKNNKSERSLQPSRMEEAFFASIAYQVITGLEYLHSQRILHRDIKPGNILLNTNGAVKLCDFGIVSLYGDDDHSLQTTVVGTSRFMSPERLRAKPYGKASDIWSFGLVLLELWNGVIPFQDCESIVSLVITVEETPLDELVS 188          
BLAST of Ec-00_000260.1 vs. uniprot
Match: A0A7S4HYT2_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HYT2_9STRA)

HSP 1 Score: 111 bits (277), Expect = 9.860e-25
Identity = 84/273 (30.77%), Postives = 127/273 (46.52%), Query Frame = 1
Query:   61 ATKVFNTLNREHGKLLSAELRVLLSVDCPCIIKFYGAWDDQN--YVNLVLEAMWLGSLFDMIYVTQ--SSCFSC-----PPGVLRWRAGSDRAGGP----------LHNHRDER-----------------AILAIDFQIFWGLEYLHSMGIVHRDVKPSNILANTCGSVKLADFGTAL-----------------PLAEKTNDVMGTFRYMPPENAPREK----GDVWAAGLVVAELFAHDVPFKSCGTHVEMAQLLDESDNDTLITHVLPK 708
            A K+F   + E   ++  EL+ L   DC C+++  GA  D+    V +VLE M  GSL D++ + Q  SS  +      PP    + + S R   P          +H +  +R                 A+ ++ +Q+ WGL YLH   ++HRDVKP+N+L ++ G VKL+D G                    PL+E    V GT RYM PE   R+K    GDVWAAGLV+AE      PF    + +E+ + ++E+  + L+     K
Sbjct:   53 ALKIFPLRDPERKSMMIKELKSLCEFDCDCLVRLLGAMFDREDGTVTMVLEYMDHGSLADILRLDQHDSSPMNTANDARPPKRQGYDSPSLRLSPPSATATATDGTIHPNFVDRSSLSSPPPRFPDGLPEYALSSVAYQLLWGLAYLHHDRVLHRDVKPANVLVHSSGRVKLSDLGICTGRRDGGGGDHXXXGDTDPLSET---VTGTTRYMSPERLRRQKYGWGGDVWAAGLVLAECRTGSSPFGGLHSFIELFETIEEASPEDLVPDAASK 322          
BLAST of Ec-00_000260.1 vs. uniprot
Match: A0A7S2LDW5_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LDW5_9STRA)

HSP 1 Score: 112 bits (279), Expect = 1.040e-24
Identity = 74/238 (31.09%), Postives = 121/238 (50.84%), Query Frame = 1
Query:    4 KGGSSLVRWIERAGKPEMYATKVFNTL--NREHGKLLSAELRVLLSVDCPCIIKFYGAWDDQNYVNLVLEAMWLGSLFDMIYVTQSSCFSCPPGVLRWRAGSDRAGGPLHNHRDERAILAIDFQIFWGLEYLHSMGIVHRDVKPSNILANTCGSVKLADFGTALPLAEK---TNDVMGTFRYMPPE----NAPREKGDVWAAGLVVAELFAHDVPFKSCGTHVEMAQLLDESDNDTLI 690
            +G  S+V+    +   E+ A KVF+++  N    ++L  E++VL S++C  +++  G +  ++ V +VLE M  GS+ D++                 R  + R  G +        + +I +Q+  G+ +LH   I+HRDVKP+N+L N+ G VKL DFG A    +K      V+GT RY+ PE    N    K DVW+ GLV+ E      PF+   + VE+   + E+  + LI
Sbjct:  103 RGACSVVQRARHSQTKELVALKVFHSIRNNANKAEMLGKEMQVLCSLNCDSLVRLIGGFFAEDSVTMVLEYMDQGSIEDLL-----------------RPFASRGLGFVRE-----VVASIAYQMLNGIAFLHDENILHRDVKPANVLVNSNGYVKLTDFGIATKQTQKDQLNQTVVGTTRYLSPERLGANPYGAKSDVWSLGLVLLECACGRSPFEGITSIVELWMTIKETPVEDLI 318          
BLAST of Ec-00_000260.1 vs. uniprot
Match: A0A835Z9W7_9STRA (Mitogen-activated protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9W7_9STRA)

HSP 1 Score: 109 bits (273), Expect = 1.260e-24
Identity = 72/231 (31.17%), Postives = 107/231 (46.32%), Query Frame = 1
Query:    4 KGGSSLVRWIERAGKPEMYATKVFNTLNREHGKLLSAELRVLLSVDCPCIIKFYGAWDDQNYVNLVLEAMWLGSLFDMIYVTQSSCFSCPPGVLRWRAGSDRAGGPLHNHRDERAILAIDFQIFWGLEYLHSMGIVHRDVKPSNILANTCGSVKLADFGTALPLAEKT---NDVMGTFRYMPPENAPREK----GDVWAAGLVVAELFAHDVPFKSCGTHVEMAQLLDESD 675
            +G SS V     AG     A KV N  ++     L  E+  L +  C  +IKFYGA+  +  + + LE M  GSL ++++           G++                  E A+  I +QI WGL Y+     VHRDVKPSN+L N+ G VK+ DFG +  L          +GTF+YM PE    E+     D+W+ GLV+ E      P+    + + M Q + ++D
Sbjct:   66 RGCSSFVCHAIHAGTNTPLALKVINMFDKGKRDQLIREINALYNARCDSLIKFYGAFYREGAITIALEYMDGGSLQNVLHQV---------GLM-----------------PEWALANITYQILWGLAYMQHERRVHRDVKPSNLLINSLGQVKVTDFGVSAELQNSMAMCGTFVGTFKYMSPERMRSERYSYDSDIWSLGLVILECATGQYPYAQDASAIAMVQTILDND 270          
BLAST of Ec-00_000260.1 vs. uniprot
Match: A0BSN2_PARTE (Protein kinase domain-containing protein n=1 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0BSN2_PARTE)

HSP 1 Score: 100 bits (250), Expect = 2.420e-21
Identity = 70/216 (32.41%), Postives = 107/216 (49.54%), Query Frame = 1
Query:    4 KGGSSLVRWIERAGKPEMYATKVFNTLN-REHGKLLSAELRVLLSVDCPCIIKFYGAWDDQNYVNLVLEAMWLGSLFDMIYVTQSSCFSCPPGVLRWRAGSDRAGGPLHNHRDERAILAIDFQIFWGLEYLH-SMGIVHRDVKPSNILANTCGSVKLADFGTALPLA--EKTNDVMGTFRYMPPENAPREK----GDVWAAGLVVAELFAHDVPFK 627
            +GG   V  ++  G  EMYA K    L+     KLL+ EL  L+S +   I++ YGA+  Q Y+ + LE M LGSL  ++            G+++                 E  ++ I ++I  GL+YLH    I+HRD+KP NIL N+ G+VK+ADFG    ++  +  N  +GT  YM PE           D+W+ G+++ E  +   PFK
Sbjct:   63 QGGFGSVEKVQLKGTQEMYALKKIKFLSDTNQEKLLTRELDALISCESDFIVQCYGAFYSQGYICIWLEYMDLGSLDRLLQ---------KDGLIK-----------------EPMMMMITYKILQGLDYLHYKHKIIHRDIKPHNILINSEGNVKIADFGICQTVSTGQYLNTYIGTAIYMSPERLQSMNYGMDADIWSLGIMLIECLSGQHPFK 252          
The following BLAST results are available for this feature:
BLAST of Ec-00_000260.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHA6_ECTSI1.990e-92100.00Similar to Calcium/calmodulin-dependent protein ki... [more]
D7FHA7_ECTSI5.110e-8992.86Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A7S0SXD7_9STRA9.230e-2934.20Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A7S1Z3W8_9STRA4.220e-2835.53Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A448Z319_9STRA2.670e-2633.18Protein kinase domain-containing protein n=1 Tax=P... [more]
A0A1E7FFH1_9STRA4.710e-2533.98Kinase-like protein n=1 Tax=Fragilariopsis cylindr... [more]
A0A7S4HYT2_9STRA9.860e-2530.77Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A7S2LDW5_9STRA1.040e-2431.09Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A835Z9W7_9STRA1.260e-2431.17Mitogen-activated protein kinase n=1 Tax=Tribonema... [more]
A0BSN2_PARTE2.420e-2132.41Protein kinase domain-containing protein n=1 Tax=P... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:415025..418509 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score270.4
Seed ortholog evalue8.7e-70
Seed eggNOG ortholog2880.D7FHA7
Length774
Hectar predicted targeting categoryother localisation
Gene idEc-00_000260.1
EggNOG free text desc.MAP kinase kinase activity
EggNOG OGsKOG0581@1,KOG0581@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000260Ec-00_000260Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 415025..418509 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000260.1Ec-00_000260.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 415025..418509 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000260.1.1Ec-00_000260.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 415025..415192 +
Ec-00_000260.1.2Ec-00_000260.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 415613..415830 +
Ec-00_000260.1.3Ec-00_000260.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 417066..417209 +
Ec-00_000260.1.4Ec-00_000260.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 417754..417865 +
Ec-00_000260.1.5Ec-00_000260.1.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 418378..418509 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000260.1CDS:Ec-00_000260.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 415025..415192 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_000260.1 ID=Ec-00_000260.1|Name=Ec-00_000260.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=258bp
MKGGSSLVRWIERAGKPEMYATKVFNTLNREHGKLLSAELRVLLSVDCPC
IIKFYGAWDDQNYVNLVLEAMWLGSLFDMIYVTQSSCFSCPPGVLRWRAG
SDRAGGPLHNHRDERAILAIDFQIFWGLEYLHSMGIVHRDVKPSNILANT
CGSVKLADFGTALPLAEKTNDVMGTFRYMPPENAPREKGDVWAAGLVVAE
LFAHDVPFKSCGTHVEMAQLLDESDNDTLITHVLPKRSPVPESITRLVNS
RTYRSCC*
back to top

spliced messenger RNA

>Ec-00_000260.1 ID=Ec-00_000260.1|Name=Ec-00_000260.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=774bp|location=Sequence derived from alignment at chr_00:415025..418509+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAGGAGGGAGTTCCCTTGTGCGATGGATCGAGAGGGCGGGAAAGCC
AGAGATGTACGCCACGAAGGTGTTCAACACGCTTAATCGCGAGCACGGCA
AGCTGCTTTCCGCGGAACTGCGGGTGCTGCTTTCTGTGGACTGTCCTTGC
ATCATCAAGTTCTACGGGGCGTGGGATGATCAGAACTACGTCAACCTAGT
GCTAGAGGCAATGTGGCTGGGGTCTCTATTTGACATGATCTACGTCACGC
AGAGCTCGTGTTTCTCTTGCCCGCCGGGGGTTCTCCGCTGGAGGGCTGGG
AGTGACAGGGCGGGCGGCCCACTGCATAACCACCGAGATGAACGGGCGAT
TCTTGCCATCGATTTTCAAATATTTTGGGGCCTCGAGTATCTGCACTCGA
TGGGCATCGTACACCGCGACGTGAAACCGTCGAACATCCTCGCGAACACG
TGCGGCTCAGTGAAGCTAGCGGACTTCGGCACCGCCTTGCCGCTCGCAGA
GAAGACCAACGATGTCATGGGCACGTTTCGTTACATGCCACCGGAGAACG
CGCCGCGTGAGAAGGGCGACGTTTGGGCGGCGGGGTTGGTAGTGGCAGAG
CTCTTCGCGCACGACGTGCCGTTCAAGTCGTGCGGTACTCACGTCGAGAT
GGCGCAGCTTCTGGATGAGAGCGACAACGACACTCTGATCACACACGTGC
TTCCCAAAAGGAGCCCGGTGCCAGAGTCCATCACACGCTTGGTGAATTCG
CGAACTTATAGGTCTTGTTGCTAG
back to top

protein sequence of Ec-00_000260.1

>Ec-00_000260.1 ID=Ec-00_000260.1|Name=Ec-00_000260.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=258bp
MKGGSSLVRWIERAGKPEMYATKVFNTLNREHGKLLSAELRVLLSVDCPC
IIKFYGAWDDQNYVNLVLEAMWLGSLFDMIYVTQSSCFSCPPGVLRWRAG
SDRAGGPLHNHRDERAILAIDFQIFWGLEYLHSMGIVHRDVKPSNILANT
CGSVKLADFGTALPLAEKTNDVMGTFRYMPPENAPREKGDVWAAGLVVAE
LFAHDVPFKSCGTHVEMAQLLDESDNDTLITHVLPKRSPVPESITRLVNS
RTYRSCC*
back to top

mRNA from alignment at chr_00:415025..418509+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_000260.1 ID=Ec-00_000260.1|Name=Ec-00_000260.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3485bp|location=Sequence derived from alignment at chr_00:415025..418509+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGAAAGGAGGGAGTTCCCTTGTGCGATGGATCGAGAGGGCGGGAAAGCC AGAGATGTACGCCACGAAGGTGTTCAACACGCTTAATCGCGAGCACGGCA AGCTGCTTTCCGCGGAACTGCGGGTGCTGCTTTCTGTGGACTGTCCTTGC ATCATCAAGTTCTACGGGGTGAGTTTCCGGAACTAGTGGCATCAGGCAGG CAGAGCTTTTCCAGGCCACAGACATTTCATTTCGTCCTTTCGAACCAGCA AGCCTTCCGTGCCGTTTCGTCGCCAACCGGAGTCTGAACGGCGTTTTCAT AGTCGCCGATTTGGAACGTATCTTCTCCTAGATACTTGGGCAGGTAATTT CTGTTTTATGGTTGCTCAAAAGCTGTTCCTGAAAGCCTCTCTGTTCGCAC TGCTGTAGTAGTTTTTGAGGGCAAAGTCGTGGAACCCTTCCCCATGGTAC ACTGTGGGCGAGAGACAGCAAAGCGGGAGCGCGCATTCATTATTGTTGCC GGCGGCACGCTGCTGAGGAAGCCAAGCGCAAAGACCAAGCCCCACCCATC CCAACCGCCATCATGTCTTCTTCGCTCTATCTCCGCAGGCGTGGGATGAT CAGAACTACGTCAACCTAGTGCTAGAGGCAATGTGGCTGGGGTCTCTATT TGACATGATCTACGTCACGCAGAGCTCGTGTTTCTCTTGCCCGCCGGGGG TTCTCCGCTGGAGGGCTGGGAGTGACAGGGCGGGCGGCCCACTGCATAAC CACCGAGATGAACGGGCGATTCTTGCCATCGATTTTCAAATATTTTGGGG CCTCGAGTGAGTACGTCGGAAGAACAGCGTTGGAACGTTCGGGCGTTAGA GTGTGCCTGAAGGTTTGGAGGTCAGGATATTGGAAACCGCAAATAAGAAC GTGCCAGCTACATGGTAGCACCGAGCCCGAGCTCCTGCTTCCTGGCGTTG CTCTCCTCACACGAAGGAGGGAAAAAACAAGTGCCGCGTGCGCATTTTAG CAAGGAAATGCCTGGGAGATACCCGTGTGTCTAGAACTGCAGTCCCAGGG ATGCCAATCCTTATCGGTTATCGGTTAGAATAAAGACCGCTTGGTGCATT CAGTATCATAAACGGATACCACGCTTCCTCGTCGACTTCCCTCCTCTTGC ACCAGCCGGAAAAATAATTTCACCTCTCCGTTTTTCTTCCACGCAAACGG ATCGAAGGCTTGGTTGGGTCTGGTGCGTCGTTGCCACGCCGGGCTAGTAT GAACAGCTCCCCAGTACTCATGCTCTCTGTCCCAGTTTGTACTGCTGCGC TGCTACAGTGCTAGACCTACAGCAGAAGCTCAGTCAAGTGGAACAAGGGT ACCTCTCAGCCTTTGCGATCGAAACCCTCGGCGCCCCCCCTTCCCAGGAG ACGAACCGTGAAGGCCATGTTTCCCGTTGGCACTCACCGCCGCCTTTCCT TCTGCGGCCGCATTCTAACACATACAAAACGGGACAAAGCCTTGTGGAAA GAAAGGACGTGGTAGAGCTGTGTATACCTAGGCGTTGAGCCTCTAACATG AGGGAGGGGGGGGGCTGGTCAGACACGAAAATAACGAATTTGGCACCCGC TTGGGGTGGAAGCTCGTCGACGACACTAGCACTATACCTTTCAACGATGT TGTCATTTATATGCCGCCGCTCCTTCGGACTGACCTCCCTCTATTGGGGA GCTAAGATCCGACGTCACAAAGGGTGAGAAATACAGCGAGGTCCAAGCTT TCACCCTTGTCGAGGAGGTGTTCAGGAGTCGATTTTTCCTGGTCATACAC CGAAATTTGCATCCCCACGCAACATCTCACAGTACAGTCGCGGCAGGAAG TGAACCAAAGGCCTTGACCATGCGAAGGTTTCGACGCCTTTTGGGGACCC CGAGAGACTACCCTCCCACCAAATTACGCCCGATTCAAAGGATCACCCGT TCGCAAGACAAACCGTACGCGGCCCCAGGTGACAGCACTATACGTTTCCT GTCATGCTGTCCCATCCTTCGTCTTCTCTGGCACTACATAGGTATCTGCA CTCGATGGGCATCGTACACCGCGACGTGAAACCGTCGAACATCCTCGCGA ACACGTGCGGCTCAGTGAAGCTAGCGGACTTCGGCACCGCCTTGCCGCTC GCAGAGAAGACCAACGATGTCATGGGCACGTTTCGGTGAGGAAAAAACGA CAAGCAAAAGCGTAGACTAATAGCCATAAGTTCGCATCAGTACAGACTGG CGTCTTGTTAATACTGTGTACCGTGCGTGCACGTACTTCGTTGGTAGGCT TCCAATTTGGAGCAAGAAAAAGTGGAACTCTGGGTGACTCACAAAGTCAA GATCCGTTTTTCCCGTACCCCGCTCCCCGCCCGCCTCCAACGCCTCACTG TTACCGCGCCCATGAACTGTAAATGGCGCTTTCAAGCTTCCGAACTTTGG TGTCTGGAAATTCGAACCAAACTAATCACAGATGAACGACCAGGCTAACA GACACACACTGACTTGTTTGTTCCGGTACAGAACAGTCTAAGGGCATCTA CCTTGAGACGCTGCTATCTGTGACGTACAATACTGCTTCTTTGCTCGTGT TTAAAACGGCACCGGCTTTTGGCCACTAGACAGATACCTCGTTTAAGACG CCAGGGCGAACACAACTTGTTTTCCACGTGAGCGACCTCACTCGATCTCA ACGAATGTTTAACTGGTATTCTGGGGCAGTTACATGCCACCGGAGAACGC GCCGCGTGAGAAGGGCGACGTTTGGGCGGCGGGGTTGGTAGTGGCAGAGC TCTTCGCGCACGACGTGCCGTTCAAGTCGTGCGGTACTCACGTGAGTCCT GGTCTTTGTTTTTGAAGATATCGTTGCTGTTGGGGTATTGGTGTTGGTGT TGATGTTGGCGTTGGTTCTCGCAGTGAGTTAAGTTGTGTGCCTTTCTAGA GCGGAGTCTACCCGAGGCAGCCTGTGGCCATCATACATGAGGCAGCTGAA GTACCCCTCTCTCCGTTGGCTTTCGACTAACTAAACAAGTGCCCCTGGCC CTAGCCGTGACCGGAGTATAGCTGGTTTCAGATCGACAGCCATAGATTGT GAGCTGGCGGAACGTCAGCATGGCATAGCGTTAGGCGGAAAAGGATCAAA CAATCGTAGCGGCAGAACTTTCAACTCGCAAACAACATACAGAAATCTAG CGTCGGTTCGGTTTGTTTGGGTGTATTATTGTGAGTGAGCGAGGGGGGGC GTGGATAAAGATCAACCACCTTATATCGGCGAGGACAACCACTCGAACAC ACACGTTTGTCATCATTTCTTCGTTTTGTGGTGCGAATACCTTCGCTTAT CAGGTCGAGATGGCGCAGCTTCTGGATGAGAGCGACAACGACACTCTGAT CACACACGTGCTTCCCAAAAGGAGCCCGGTGCCAGAGTCCATCACACGCT TGGTGAATTCGCGAACTTATAGGTCTTGTTGCTAG
back to top

Coding sequence (CDS) from alignment at chr_00:415025..418509+

>Ec-00_000260.1 ID=Ec-00_000260.1|Name=Ec-00_000260.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=774bp|location=Sequence derived from alignment at chr_00:415025..418509+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGAAAGGAGGGAGTTCCCTTGTGCGATGGATCGAGAGGGCGGGAAAGCC
AGAGATGTACGCCACGAAGGTGTTCAACACGCTTAATCGCGAGCACGGCA
AGCTGCTTTCCGCGGAACTGCGGGTGCTGCTTTCTGTGGACTGTCCTTGC
ATCATCAAGTTCTACGGGGCGTGGGATGATCAGAACTACGTCAACCTAGT
GCTAGAGGCAATGTGGCTGGGGTCTCTATTTGACATGATCTACGTCACGC
AGAGCTCGTGTTTCTCTTGCCCGCCGGGGGTTCTCCGCTGGAGGGCTGGG
AGTGACAGGGCGGGCGGCCCACTGCATAACCACCGAGATGAACGGGCGAT
TCTTGCCATCGATTTTCAAATATTTTGGGGCCTCGAGTATCTGCACTCGA
TGGGCATCGTACACCGCGACGTGAAACCGTCGAACATCCTCGCGAACACG
TGCGGCTCAGTGAAGCTAGCGGACTTCGGCACCGCCTTGCCGCTCGCAGA
GAAGACCAACGATGTCATGGGCACGTTTCGTTACATGCCACCGGAGAACG
CGCCGCGTGAGAAGGGCGACGTTTGGGCGGCGGGGTTGGTAGTGGCAGAG
CTCTTCGCGCACGACGTGCCGTTCAAGTCGTGCGGTACTCACGTCGAGAT
GGCGCAGCTTCTGGATGAGAGCGACAACGACACTCTGATCACACACGTGC
TTCCCAAAAGGAGCCCGGTGCCAGAGTCCATCACACGCTTGGTGAATTCG
CGAACTTATAGGTCTTGTTGCTAG
back to top
Synonyms
The feature 'Ec-00_000260.1' has the following synonyms
Synonym
Esi1063_0002
Esi_1063_0002