Ec-00_000200.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_000200.1
Unique NameEc-00_000200.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length93
Homology
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BLAST of Ec-00_000200.1 vs. uniprot
Match: D7FH73_ECTSI (V-ATPase_H_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH73_ECTSI)

HSP 1 Score: 190 bits (482), Expect = 2.560e-61
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 
Query:    1 MKVMSGHLKWGPVHTEKFWREQARKFEADEFFILKQLIELLKSEDKSVVSIACYDLGEFVRFYPSGKTIVKHLGSRRLFFVPILPRILLRTK 276
            MKVMSGHLKWGPVHTEKFWREQARKFEADEFFILKQLIELLKSEDKSVVSIACYDLGEFVRFYPSGKTIVKHLGSRRLFFVPILPRILLRTK
Sbjct:    1 MKVMSGHLKWGPVHTEKFWREQARKFEADEFFILKQLIELLKSEDKSVVSIACYDLGEFVRFYPSGKTIVKHLGSRRLFFVPILPRILLRTK 92
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BLAST of Ec-00_000200.1 vs. uniprot
Match: A0A6H5LCE7_9PHAE (V-ATPase_H_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCE7_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 1.850e-41
Identity = 71/75 (94.67%), Postives = 74/75 (98.67%), Query Frame = 1 
Query:    4 KVMSGHLKWGPVHTEKFWREQARKFEADEFFILKQLIELLKSEDKSVVSIACYDLGEFVRFYPSGKTIVKHLGSR 228
            +VMSG LKWGPVHTEKFWREQARKFEADEFFILKQLIELLKSEDKSVVSIACYDLGEFVRFYPSGKTIVKHLG++
Sbjct:  413 EVMSGQLKWGPVHTEKFWREQARKFEADEFFILKQLIELLKSEDKSVVSIACYDLGEFVRFYPSGKTIVKHLGAK 487
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BLAST of Ec-00_000200.1 vs. uniprot
Match: A0A835Z9Q6_9STRA (V-type H+-transporting ATPase 54 kd subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9Q6_9STRA)

HSP 1 Score: 114 bits (286), Expect = 3.970e-28
Identity = 50/75 (66.67%), Postives = 65/75 (86.67%), Query Frame = 1 
Query:    4 KVMSGHLKWGPVHTEKFWREQARKFEADEFFILKQLIELLKSEDKSVVSIACYDLGEFVRFYPSGKTIVKHLGSR 228
            +V SG L+WG VHTE+FWRE AR  EAD+F +++ LI LL+SED++VV+IACYDLGEFVRFYP+GK I+KHLG++
Sbjct:  350 EVRSGRLRWGVVHTERFWRENARATEADDFALIRALIGLLRSEDETVVAIACYDLGEFVRFYPTGKAILKHLGAK 424
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BLAST of Ec-00_000200.1 vs. uniprot
Match: F0XWY7_AURAN (V-ATPase_H_C domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XWY7_AURAN)

HSP 1 Score: 106 bits (264), Expect = 8.650e-28
Identity = 48/76 (63.16%), Postives = 62/76 (81.58%), Query Frame = 1 
Query:    4 KVMSGHLKWGPVHTEKFWREQARKFEADEFFILKQLIELLKSE-DKSVVSIACYDLGEFVRFYPSGKTIVKHLGSR 228
            +V SG L WG VHT+KFWRE AR  EAD+F ++K L++LL  + D +VVSIACYD+GEFVRFYP+GK +VKHLG++
Sbjct:    9 EVRSGDLAWGLVHTDKFWRENARAAEADDFALIKLLVQLLDGDRDPTVVSIACYDVGEFVRFYPNGKAVVKHLGAK 84
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BLAST of Ec-00_000200.1 vs. uniprot
Match: A0A7S2H8Z8_9STRA (V-type proton ATPase subunit H n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H8Z8_9STRA)

HSP 1 Score: 113 bits (282), Expect = 1.370e-27
Identity = 51/77 (66.23%), Postives = 65/77 (84.42%), Query Frame = 1 
Query:    4 KVMSGHLKWGPVHTEKFWREQARKFEADEFFILKQLIELLKSEDKSVVSIACYDLGEFVRFYPSGKTIVKHLGSRRL 234
            +V S  LKWG VH EKFWRE A++ E +EF +LK+LIELL+S+D  VVS+ACYDLGEFVRFYP+GK+IVK+LG++ L
Sbjct:  341 EVKSKQLKWGLVHQEKFWRENAKELEVNEFALLKELIELLRSDDPEVVSVACYDLGEFVRFYPNGKSIVKNLGAKDL 417
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BLAST of Ec-00_000200.1 vs. uniprot
Match: A0A7S2SKW2_9STRA (V-type proton ATPase subunit H n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SKW2_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.260e-25
Identity = 53/83 (63.86%), Postives = 65/83 (78.31%), Query Frame = 1 
Query:    4 KVMSGHLKWGP-VHTEKFWREQARKFEADEFFILKQLIELLKSEDKSVVSIACYDLGEFVRFYPSGKTIVKHLGSRRLFFVPI 249
            +VMS  LKWG  VH EKFWRE AR  E ++F +LK LI LLKSED  VVS+ACYDLGEFVRFYP+G++IVK+LG++ L  + I
Sbjct:  334 EVMSRRLKWGSLVHEEKFWRENARCLEDNDFELLKALIGLLKSEDNEVVSVACYDLGEFVRFYPNGRSIVKNLGAKDLVMLKI 416
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BLAST of Ec-00_000200.1 vs. uniprot
Match: I2CP76_NANGC (V-type proton ATPase subunit H n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CP76_NANGC)

HSP 1 Score: 106 bits (264), Expect = 4.670e-25
Identity = 46/75 (61.33%), Postives = 60/75 (80.00%), Query Frame = 1 
Query:    4 KVMSGHLKWGPVHTEKFWREQARKFEADEFFILKQLIELLKSEDKSVVSIACYDLGEFVRFYPSGKTIVKHLGSR 228
            +V SG L+WG VH+EKFW+E  R  EAD+F +LK LI LL SED+ VV+IACYD+GEF RFYP+G++IVK  G++
Sbjct:  335 EVASGQLRWGIVHSEKFWKENVRSLEADDFKVLKSLISLLASEDEEVVAIACYDIGEFARFYPNGRSIVKLFGAK 409
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BLAST of Ec-00_000200.1 vs. uniprot
Match: A0A7S2V6V1_9STRA (V-type proton ATPase subunit H n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6V1_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.370e-23
Identity = 47/69 (68.12%), Postives = 55/69 (79.71%), Query Frame = 1 
Query:    4 KVMSGHLKWGPVHTEKFWREQARKFEADEFFILKQLIELLKSEDKSVVSIACYDLGEFVRFYPSGKTIV 210
            +V SG LKWG  HTEKFWR   R  EAD+F +LKQL ELL S D+ VVSIACYD+GEFVRFYP+GK++V
Sbjct:  353 EVRSGQLKWGLCHTEKFWRNNVRSMEADDFALLKQLGELLGSADEEVVSIACYDIGEFVRFYPNGKSLV 421
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BLAST of Ec-00_000200.1 vs. uniprot
Match: A0A1E7FC18_9STRA (ARM repeat-containing protein n=2 Tax=Bacillariaceae TaxID=33852 RepID=A0A1E7FC18_9STRA)

HSP 1 Score: 100 bits (248), Expect = 1.190e-22
Identity = 45/79 (56.96%), Postives = 61/79 (77.22%), Query Frame = 1 
Query:    4 KVMSGHLKWGPVHTEKFWREQARKFEADE--FFILKQLIELLKSEDKSVVSIACYDLGEFVRFYPSGKTIVKHLGSRRL 234
            +V  GHL+WG  HTE F++E A+ FE  +  FF+LK LI LL S+D+ VV+IACYD+GEFVRFYP+G++I K LG++ L
Sbjct:  404 EVEKGHLQWGSTHTEAFFKENAKMFEGSDGDFFLLKVLITLLSSKDEEVVAIACYDIGEFVRFYPNGRSITKRLGAKEL 482
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BLAST of Ec-00_000200.1 vs. uniprot
Match: A0A5D6XL77_9STRA (V-type proton ATPase subunit H n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XL77_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 1.210e-22
Identity = 41/77 (53.25%), Postives = 62/77 (80.52%), Query Frame = 1 
Query:    4 KVMSGHLKWGPVHTEKFWREQARKFEADEFFILKQLIELLKSEDKSVVSIACYDLGEFVRFYPSGKTIVKHLGSRRL 234
            ++ +GHL WG +HT+KFW+E  R FE  EF +++ LI+LL+S+D+  V++A +DLGEFVRFYP+GK IVK LG++++
Sbjct:  342 ELRTGHLNWGLLHTDKFWKENVRAFENKEFELIRLLIDLLESDDQKTVAVALFDLGEFVRFYPNGKHIVKRLGAKKV 418
The following BLAST results are available for this feature:
BLAST of Ec-00_000200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FH73_ECTSI2.560e-61100.00V-ATPase_H_C domain-containing protein n=1 Tax=Ect... [more]
A0A6H5LCE7_9PHAE1.850e-4194.67V-ATPase_H_C domain-containing protein n=1 Tax=Ect... [more]
A0A835Z9Q6_9STRA3.970e-2866.67V-type H+-transporting ATPase 54 kd subunit n=1 Ta... [more]
F0XWY7_AURAN8.650e-2863.16V-ATPase_H_C domain-containing protein (Fragment) ... [more]
A0A7S2H8Z8_9STRA1.370e-2766.23V-type proton ATPase subunit H n=1 Tax=Dictyocha s... [more]
A0A7S2SKW2_9STRA1.260e-2563.86V-type proton ATPase subunit H n=1 Tax=Rhizochromu... [more]
I2CP76_NANGC4.670e-2561.33V-type proton ATPase subunit H n=1 Tax=Nannochloro... [more]
A0A7S2V6V1_9STRA1.370e-2368.12V-type proton ATPase subunit H n=1 Tax=Fibrocapsa ... [more]
A0A1E7FC18_9STRA1.190e-2256.96ARM repeat-containing protein n=2 Tax=Bacillariace... [more]
A0A5D6XL77_9STRA1.210e-2253.25V-type proton ATPase subunit H n=1 Tax=Pythium bra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:363451..364413 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score193.0
Seed ortholog evalue6.4e-47
Seed eggNOG ortholog2880.D7FH73
Preferred nameATP6V1H
Length279
KEGG koko:K02144
KEGG TC3.A.2.2
KEGG Pathwayko00190,ko01100,ko04142,ko04145,ko04150,ko04721,ko05110,ko05120,ko05152,ko05323,map00190,map01100,map04142,map04145,map04150,map04721,map05110,map05120,map05152,map05323
KEGG ModuleM00160
Hectar predicted targeting categoryother localisation
Gene idEc-00_000200.1
GOsGO:0000041,GO:0000221,GO:0000322,GO:0000323,GO:0000324,GO:0000325,GO:0000329,GO:0000331,GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005773,GO:0005774,GO:0005794,GO:0005829,GO:0005886,GO:0006403,GO:0006810,GO:0006811,GO:0006812,GO:0006826,GO:0006873,GO:0006885,GO:0006897,GO:0007035,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007568,GO:0008104,GO:0008150,GO:0008286,GO:0008324,GO:0008340,GO:0009507,GO:0009536,GO:0009719,GO:0009725,GO:0009894,GO:0009987,GO:0010033,GO:0010243,GO:0010259,GO:0010506,GO:0012505,GO:0015031,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015682,GO:0015833,GO:0015931,GO:0015988,GO:0015991,GO:0016020,GO:0016021,GO:0016032,GO:0016192,GO:0016241,GO:0016462,GO:0016469,GO:0016471,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019222,GO:0019725,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0023052,GO:0030001,GO:0030003,GO:0030004,GO:0030234,GO:0030641,GO:0031090,GO:0031164,GO:0031224,GO:0031323,GO:0031329,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0032868,GO:0032869,GO:0032870,GO:0032991,GO:0033036,GO:0033176,GO:0033178,GO:0033180,GO:0033181,GO:0033227,GO:0033572,GO:0034220,GO:0036442,GO:0042221,GO:0042592,GO:0042623,GO:0042625,GO:0042626,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043434,GO:0043492,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044769,GO:0045184,GO:0045851,GO:0046961,GO:0048856,GO:0048878,GO:0050657,GO:0050658,GO:0050690,GO:0050789,GO:0050790,GO:0050794,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0051236,GO:0051452,GO:0051453,GO:0051704,GO:0051716,GO:0055067,GO:0055080,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0065009,GO:0070887,GO:0071310,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0071944,GO:0072512,GO:0090662,GO:0097708,GO:0098588,GO:0098655,GO:0098657,GO:0098660,GO:0098662,GO:0098771,GO:0098772,GO:0098796,GO:0098797,GO:0098805,GO:0098852,GO:0099131,GO:0099132,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902600
EggNOG free text desc.proton-transporting ATPase activity, rotational mechanism
EggNOG OGsCOG5231@1,KOG2759@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000200Ec-00_000200Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 363451..364413 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000200.1.4Ec-00_000200.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 363451..363508 -
Ec-00_000200.1.3Ec-00_000200.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 363661..363773 -
Ec-00_000200.1.2Ec-00_000200.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 364012..364113 -
Ec-00_000200.1.1Ec-00_000200.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 364408..364413 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000200.1CDS:Ec-00_000200.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 363451..363508 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000200.1Ec-00_000200.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 363451..364413 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_000200.1 ID=Ec-00_000200.1|Name=Ec-00_000200.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=93bp
MKVMSGHLKWGPVHTEKFWREQARKFEADEFFILKQLIELLKSEDKSVVS
IACYDLGEFVRFYPSGKTIVKHLGSRRLFFVPILPRILLRTK*
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spliced messenger RNA

>Ec-00_000200.1 ID=Ec-00_000200.1|Name=Ec-00_000200.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=279bp|location=Sequence derived from alignment at chr_00:363451..364413- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGTCATGTCCGGCCACTTGAAGTGGGGGCCGGTGCACACGGAGAA
GTTCTGGAGGGAGCAGGCCAGGAAGTTCGAGGCCGACGAGTTCTTCATCC
TCAAGCAGCTTATCGAGCTCCTCAAGTCGGAGGACAAGAGCGTTGTGTCC
ATCGCGTGCTACGACCTGGGGGAGTTCGTGCGCTTCTACCCTAGCGGCAA
GACAATCGTAAAACACCTAGGGAGCCGCAGGTTGTTCTTCGTGCCAATTC
TTCCGCGTATTTTGCTCAGAACCAAATGA
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protein sequence of Ec-00_000200.1

>Ec-00_000200.1 ID=Ec-00_000200.1|Name=Ec-00_000200.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=93bp
MKVMSGHLKWGPVHTEKFWREQARKFEADEFFILKQLIELLKSEDKSVVS
IACYDLGEFVRFYPSGKTIVKHLGSRRLFFVPILPRILLRTK*
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mRNA from alignment at chr_00:363451..364413-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_000200.1 ID=Ec-00_000200.1|Name=Ec-00_000200.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=963bp|location=Sequence derived from alignment at chr_00:363451..364413- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGAAGGTCTGAGTATCGTATGAGGCGGAGAGATGGCACCCCCCCCATTT
TCAAAGCTCGATTACTCCGAAAATGGTGGTTTTGGAAACATCTCCTCGTC
GAGGACTTTCCGTAGGCGCATCGAAGTCTTTCCGCACCTTCCTTGGTAGT
GGAGTAGTGGAGCTTTGAAAGGTCTGTCCGCGGGGGGTGCCATCTCCCCG
CCTCCTACATTCCCTTACATAGCGCTGTGTGCGCGTAATGTCTGATGTAA
CCTCCCGGCGTCTTTCCTTGGCGTGCCTGCTTTTTCGTTCCCCCCTGCAG
GTCATGTCCGGCCACTTGAAGTGGGGGCCGGTGCACACGGAGAAGTTCTG
GAGGGAGCAGGCCAGGAAGTTCGAGGCCGACGAGTTCTTCATCCTCAAGC
AGGTCGGAGAACGCCCTGTGGCATTCTGCTGCTTACGTCGTTGTTGTTGT
TGTTTCTTACAATGTCGTTGTCCTTGGGATGACGACCGTTAGTGACAGGT
AATCCCAAACCATGCGTTTACACCGATGCATGCTCCCTCCCTCCCTCTCC
CTCCCTCTCCTTGCCCTCCCTCCCTTTCCTCCTGATGGTTTTGCGTATGC
ACCTCGTTTGGTCTTGCCGCTTTGTTCTCTTCCCATCCAGCTTATCGAGC
TCCTCAAGTCGGAGGACAAGAGCGTTGTGTCCATCGCGTGCTACGACCTG
GGGGAGTTCGTGCGCTTCTACCCTAGCGGCAAGACAATCGTAAAACACCT
AGGGTGAGTGGAGAAACTCCAACAAGAAACTTAGCGTGGAATTGCTGTAC
GCATGATTTTCGCTACAGTTTAGAACTATGAGGAAATTTTTTCGACTCCA
TTGGTCGTTGTTGTTGTCCTTTGGGCCCTCGAAACCACGTGGCCCTCGAA
AAGAGGAGCCGCAGGTTGTTCTTCGTGCCAATTCTTCCGCGTATTTTGCT
CAGAACCAAATGA
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Coding sequence (CDS) from alignment at chr_00:363451..364413-

>Ec-00_000200.1 ID=Ec-00_000200.1|Name=Ec-00_000200.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=279bp|location=Sequence derived from alignment at chr_00:363451..364413- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGAAGGTCATGTCCGGCCACTTGAAGTGGGGGCCGGTGCACACGGAGAA
GTTCTGGAGGGAGCAGGCCAGGAAGTTCGAGGCCGACGAGTTCTTCATCC
TCAAGCAGCTTATCGAGCTCCTCAAGTCGGAGGACAAGAGCGTTGTGTCC
ATCGCGTGCTACGACCTGGGGGAGTTCGTGCGCTTCTACCCTAGCGGCAA
GACAATCGTAAAACACCTAGGGAGCCGCAGGTTGTTCTTCGTGCCAATTC
TTCCGCGTATTTTGCTCAGAACCAAATGA
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Synonyms
The feature 'Ec-00_000200.1' has the following synonyms
Synonym
Esi1053_0006
Esi_1053_0006