Ec-00_000170.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_000170.2
Unique NameEc-00_000170.2
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length116
Homology
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BLAST of Ec-00_000170.2 vs. uniprot
Match: D7FY94_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY94_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 7.090e-23
Identity = 49/50 (98.00%), Postives = 49/50 (98.00%), Query Frame = 2 
Query:  233 VETAMSGLGTAMFSKVLGPSKQGISRVGGRDHAERELRPGRLMQAHRHIF 382
            VETAMSGLGT MFSKVLGPSKQGISRVGGRDHAERELRPGRLMQAHRHIF
Sbjct:    7 VETAMSGLGTVMFSKVLGPSKQGISRVGGRDHAERELRPGRLMQAHRHIF 56
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BLAST of Ec-00_000170.2 vs. uniprot
Match: D7FH35_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH35_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 3.070e-18
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 2 
Query:  101 MLGLRARQPPRLTRRTCAAKSGKTSFYTARADKRERHAGSSFCL 232
            MLGLRARQPPRLTRRTCAAKSGKTSFYTARADKRERHAGSSFCL
Sbjct:    1 MLGLRARQPPRLTRRTCAAKSGKTSFYTARADKRERHAGSSFCL 44
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BLAST of Ec-00_000170.2 vs. uniprot
Match: A0A6H5KX63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX63_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 3.930e-15
Identity = 38/45 (84.44%), Postives = 39/45 (86.67%), Query Frame = 2 
Query:  245 MSGLGTAMFSKVLGPSKQGISRVGGRDHAERELRPGRLMQAHRHI 379
            MSG GT MFS VLGP+K GISRVGGRDHAERE RPGRL QAHRHI
Sbjct:    1 MSGFGTVMFSNVLGPAKHGISRVGGRDHAEREFRPGRLTQAHRHI 45
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BLAST of Ec-00_000170.2 vs. uniprot
Match: A0A6H5K8S4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8S4_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 1.940e-8
Identity = 33/47 (70.21%), Postives = 35/47 (74.47%), Query Frame = 2 
Query:  245 MSGLGTAMFSKVLGP--SKQGISRVGGRDHAERELRPGRLMQAHRHI 379
            MSGLGT  FSKVLGP  S+   SRVGGRDHAER+ RPGR M  HR I
Sbjct:    1 MSGLGTVTFSKVLGPAASQARRSRVGGRDHAERDRRPGRPMHVHRPI 47
The following BLAST results are available for this feature:
BLAST of Ec-00_000170.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FY94_ECTSI7.090e-2398.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FH35_ECTSI3.070e-18100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KX63_9PHAE3.930e-1584.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8S4_9PHAE1.940e-870.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:304403..308192 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length1339
Hectar predicted targeting categoryother localisation
Gene idEc-00_000170.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000170Ec-00_000170Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 304397..308366 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000170.2.1Ec-00_000170.2.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 304403..304636 +
Ec-00_000170.2.2Ec-00_000170.2.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 307088..308192 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0001705UTR:Ec-00_000170.2Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 304403..304636 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000170.2CDS:Ec-00_000170.2Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 307735..308082 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0001703UTR:Ec-00_000170.2Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 308083..308192 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000170.2Ec-00_000170.2Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 307735..308082 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_000170.2 ID=Ec-00_000170.2|Name=Ec-00_000170.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=116bp
MSWCHATGPGAMSVCPYNLHAASVIIMLEFWNRHVRFENEDNCWSPSSPC
CLLLSAVSPHYLLSTLLWCIHPAPAKHHLAPLTAWIDPFRRYSRSASSRM
SRRGWALQGTLRQQE*
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spliced messenger RNA

>Ec-00_000170.2 ID=Ec-00_000170.2|Name=Ec-00_000170.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1339bp|location=Sequence derived from alignment at chr_00:304403..308192+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
AGCCTTGACACAGGCGACCAGAGGCCGCAGCGTGCCAAGACGAATACGAT
TAGACTGGTGGCATTCCTTTCGTAACCAAGGCAACAGGCTACTATCTCTA
GATGCTCGGACTTCGGGCACGGCAGCCGCCGCGGCTAACCCGCCGCACTT
GTGCTGCTAAGAGCGGCAAGACGAGCTTCTACACGGCGCGCGCGGACAAG
AGAGAGCGACATGCCGGCAGCAGTTTCTGCTTAGGTGGAGACGGCCATGA
GCGGGCTCGGTACCGCCATGTTCTCAAAGGTTCTAGGGCCATCCAAGCAA
GGCATTTCCCGGGTCGGAGGGCGAGACCATGCAGAGCGTGAGCTTCGACC
AGGTCGACTGATGCAAGCGCACCGCCACATATTCAGGTACGGTCGGGTTA
TTAAGTGAACTCCCTGCGGTAATGCGAGATATATTTCAGAAGTGGTGCCC
TGTGGTTTGAAAAACAAAGTGTATGATGGTAAGTTCATGTCGCAACCCCC
CCACACCTCTGTCCACCGGGAACAGATAGAGGTCTGCTACTGCACCTGCT
GTCAGAGTCGTGCATAACATCGCCGATCACTCCGGCATAGGTCCACTCAC
GTTTTCAGTACATCCGCTCCTATTTGAATGTGAACGGAAGGAGCGACGAA
TTCCTTCTTTCGAACGCTGTTCATTCGTTCATTCATGAGCAGAATGGGAA
GGAACGGGGGGACGTGCAGGCAACAATCCTCGCGATTCATTGCTTGTGGA
AGGGGTAGAGACTTTTTGACGCACACGTACCACTACTTGTGTTGGTTTGA
GGGGCTCGCATGCTGTAGCGTTAGCCTGTCGTGCAGGATAGAGGTGAGCG
CACGGTGAGCGATAGTGCGCATCTACCAAACATGTCATGGTGCCACGCAA
CAGGACCGGGGGCAATGAGTGTTTGTCCTTACAATCTTCATGCCGCTTCC
GTGATAATAATGCTTGAATTTTGGAATCGCCACGTACGTTTTGAAAATGA
GGATAACTGCTGGAGTCCATCTTCGCCCTGCTGCCTGCTGCTTTCAGCAG
TAAGTCCACACTATCTACTGTCAACCTTGCTCTGGTGCATCCATCCAGCC
CCCGCTAAGCACCACCTCGCCCCCCTCACGGCATGGATTGATCCCTTTCG
AAGATACTCGAGAAGTGCATCCTCGCGGATGTCAAGACGAGGATGGGCAC
TCCAGGGCACACTTCGCCAACAAGAGTGACCGCGACCATGACGGTATACC
GTACCTTCCCGATGTGTCACCCTTTATTCGAAAAGGCGTTGCTGGGAAGT
ATGGCGGCGGCGACCAAACGTTGGACGTCATCCGGGACA
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protein sequence of Ec-00_000170.2

>Ec-00_000170.2 ID=Ec-00_000170.2|Name=Ec-00_000170.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=116bp
MSWCHATGPGAMSVCPYNLHAASVIIMLEFWNRHVRFENEDNCWSPSSPC
CLLLSAVSPHYLLSTLLWCIHPAPAKHHLAPLTAWIDPFRRYSRSASSRM
SRRGWALQGTLRQQE*
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mRNA from alignment at chr_00:304403..308192+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_000170.2 ID=Ec-00_000170.2|Name=Ec-00_000170.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3790bp|location=Sequence derived from alignment at chr_00:304403..308192+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
AGCCTTGACACAGGCGACCAGAGGCCGCAGCGTGCCAAGACGAATACGAT
TAGACTGGTGGCATTCCTTTCGTAACCAAGGCAACAGGCTACTATCTCTA
GATGCTCGGACTTCGGGCACGGCAGCCGCCGCGGCTAACCCGCCGCACTT
GTGCTGCTAAGAGCGGCAAGACGAGCTTCTACACGGCGCGCGCGGACAAG
AGAGAGCGACATGCCGGCAGCAGTTTCTGCTTAGGTAAGCAAAAGAAGGA
TGCATGAAGGGAAAGTTGTGTGTTGTGTATCCCTGTGTCCCCTGCGGGAG
AGGCGCGAACTCAGCATTTAGTGTTGTTACATGTGCTCAGACACCAGCAG
TTGGTCCTGCACACCCAATGGCTCTGGGCCTACTGCGCGCATGCAGCTCT
TACTCATCATGTACAACGGGGAATTGTCCCGAAGGCGTCAATCAGTGCCC
AGCCTCATTAGTCATTGTTTAGGGCGGGGGATGTACATGCTGCTGTAGGC
ACTTCGCCATTTCTCAACGGTTTTTTGAGGGGGTCGTGCTTGAAGTATTA
TTATAGTATTTTTCATCAGTATTTTGTGACAACGCGCATGTCGGCTGTAT
GACGTGTCCACACACATGCCAAGCAGAGACCGCGTGAACCGTCCAGAGGC
ATCAGCCGACGCTCAGCCCTTAACACGCCCTGTTTTTTTTAGACAAATTG
TAATTGTTCGATTGACACAGGGTCGTTCACACGTCGCAATATTGTAAACA
TGCGTTCGTTTTGAAAGCAAGAATTGACTATTATACCGTAGGTTGCATAA
GATACCACACCCCCCTTAACCGAATTTCGCACCTCTATTTTTCCCGACAA
AGACAATGATATGCCAAAGTCAAACGATACATTTTTGGAAAGTTCTGGAC
TGGACAGTTCCAATGCTACCATTTCCGGCACCGCCACCTCTTCTGCTGGG
TAGTAAACAGGGTTTGGAAATTGGTCCAGGGGGCGTGATATCTTAAGCAA
CCAACTGCTGTGAGACAGCAGTGGATTCGATTCTCCTCTGCGCCATCGTT
TTCTTCCACCACCCTTTTTTTCTTTTTCTTTTCCTCGGGAAATTGATGTG
CACTTTGGAATAGAAATATACGTTTGTTGGCCGTAAATACCGAGTAAGGC
GGTTTCTCATGAGCACCACTTGCTACCCCTATTTTCATAACACTTTCTAC
CCCATACCATATCATGATCGGTCGGTTTGTGTTTTCTTGGATCTCTGCGC
ACTGGGTGACACAACAGCAATAGCAAAGCATGCGCCCATGTCTGTACGTA
TGTATGGTGCCTCATGTGGGGTGGTTGTTACAGACCGTGAGGCGCGGGGA
GGCTGAGAATTGAAGTTGGTGAGAGGGCCAACTGCTGTTCGAAGAAGACA
CCCCGCTCGAACACACTCCGAACACAGCTAGTGACAAGTTATTTGCAACG
TCACAGGTTTGGTTTCGTAGCGACCCCTCTTAACTGACCGAACCAACAGA
TACCACAATGCCACCCGCCCGTAGCTGCGTATATGGTGCTTCTTGTGCTG
TGGTTTTCAGAGGCCGTGACGGGCTGGGGGCTGAGCAACGAAGTTGGCGA
GGGTCGACTGCTGTTCGAAAAATGGATTGCCGCTCACTGCTGTACATATT
TATTTCTTGCCATTTCACCAGTGGCGTTGTAGTTATCCCTCCACTGAACA
GGCCAACAGCAACGACGCAGTCCCTCCGATAGAGAGCGGCCTGATGGAGC
TCACATCCTCGCAAGTTTCAGCAGGAGGGTGATCTAGCGAGCAAGAAATT
GAAGACTTTGTCCAGCAATGTGTGTGTTGGGATGATGCTGCGTCTGTTTG
CGGGTCTTTTCTTTGCAAGTCTGAACAAGCGGTGCTGCGTGAGCTGGCCA
ACATTTCGCTTTGAGCGCACCTCGCCACACGGCAACCAAATATCAACGGC
TGAGATGGCAGCACAGTGCTCCGAGGGTTGCTACGACCAACTTGCTGCGC
AATCGATGTTTATTTCCGTGTGGTGTGCATTTCCAAACGCAATAAACAAA
CGCGCCATCGGATCAAAAATTGTCGTCACTTCCGAACGCATGGCCGCTTG
AAACGAAGTCGAAAATCTTCAGCCGGAAACAAATTTGTAATTTCTAGTCC
TACAGTGTATAAGAAACGTTTTATTGTCCGATTTCATAAATTACACTTTT
TTCCCGAGAAAAACGATAAATTACGAACAGCCTAAACCCCTGAAAACAAG
GCGTGTCAGAGATCGGAACGTTTATATTTTTATCTCAAGACAGCAACAAC
AGCATGAAGAAAGGCGGTCGCAGTGGGTGCCCCCAAGTGTGGCGAAGGGG
CCAACAGCAAAAGCAAATGGTACAGACATTAGCACATTCATTCCCTTTGA
CTATTGCGTTTTCCTGAACGGGTAGTCTTTCAGTGAATTGTATGCCTAAC
TGGTATGTAGCTTTCTAGGAACTGGCGAACCGGACAGCAGTATAGATGAA
ATTATCTTCCGGTACGTACAGCACTTCATGTTACGCAAATTCTTGACCGA
ATGAAGCCGCGCCACCGATGAGAAATGGAGAGGGCACCAGTAGTGTGCAT
AGCAGAGCAGAGGGGTATACATGTGCATCGTTCACATGTTGCGTCTCACG
CACTTTTTGTCCCCCCCCGCCCTGTATCGTAGTAGGTGGAGACGGCCATG
AGCGGGCTCGGTACCGCCATGTTCTCAAAGGTTCTAGGGCCATCCAAGCA
AGGCATTTCCCGGGTCGGAGGGCGAGACCATGCAGAGCGTGAGCTTCGAC
CAGGTCGACTGATGCAAGCGCACCGCCACATATTCAGGTACGGTCGGGTT
ATTAAGTGAACTCCCTGCGGTAATGCGAGATATATTTCAGAAGTGGTGCC
CTGTGGTTTGAAAAACAAAGTGTATGATGGTAAGTTCATGTCGCAACCCC
CCCACACCTCTGTCCACCGGGAACAGATAGAGGTCTGCTACTGCACCTGC
TGTCAGAGTCGTGCATAACATCGCCGATCACTCCGGCATAGGTCCACTCA
CGTTTTCAGTACATCCGCTCCTATTTGAATGTGAACGGAAGGAGCGACGA
ATTCCTTCTTTCGAACGCTGTTCATTCGTTCATTCATGAGCAGAATGGGA
AGGAACGGGGGGACGTGCAGGCAACAATCCTCGCGATTCATTGCTTGTGG
AAGGGGTAGAGACTTTTTGACGCACACGTACCACTACTTGTGTTGGTTTG
AGGGGCTCGCATGCTGTAGCGTTAGCCTGTCGTGCAGGATAGAGGTGAGC
GCACGGTGAGCGATAGTGCGCATCTACCAAACATGTCATGGTGCCACGCA
ACAGGACCGGGGGCAATGAGTGTTTGTCCTTACAATCTTCATGCCGCTTC
CGTGATAATAATGCTTGAATTTTGGAATCGCCACGTACGTTTTGAAAATG
AGGATAACTGCTGGAGTCCATCTTCGCCCTGCTGCCTGCTGCTTTCAGCA
GTAAGTCCACACTATCTACTGTCAACCTTGCTCTGGTGCATCCATCCAGC
CCCCGCTAAGCACCACCTCGCCCCCCTCACGGCATGGATTGATCCCTTTC
GAAGATACTCGAGAAGTGCATCCTCGCGGATGTCAAGACGAGGATGGGCA
CTCCAGGGCACACTTCGCCAACAAGAGTGACCGCGACCATGACGGTATAC
CGTACCTTCCCGATGTGTCACCCTTTATTCGAAAAGGCGTTGCTGGGAAG
TATGGCGGCGGCGACCAAACGTTGGACGTCATCCGGGACA
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Coding sequence (CDS) from alignment at chr_00:304403..308192+

>Ec-00_000170.2 ID=Ec-00_000170.2|Name=Ec-00_000170.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=348bp|location=Sequence derived from alignment at chr_00:304403..308192+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTCATGGTGCCACGCAACAGGACCGGGGGCAATGAGTGTTTGTCCTTA
CAATCTTCATGCCGCTTCCGTGATAATAATGCTTGAATTTTGGAATCGCC
ACGTACGTTTTGAAAATGAGGATAACTGCTGGAGTCCATCTTCGCCCTGC
TGCCTGCTGCTTTCAGCAGTAAGTCCACACTATCTACTGTCAACCTTGCT
CTGGTGCATCCATCCAGCCCCCGCTAAGCACCACCTCGCCCCCCTCACGG
CATGGATTGATCCCTTTCGAAGATACTCGAGAAGTGCATCCTCGCGGATG
TCAAGACGAGGATGGGCACTCCAGGGCACACTTCGCCAACAAGAGTGA
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Synonyms
The feature 'Ec-00_000170.2' has the following synonyms
Synonym
Esi1044_0001
Esi_1044_0001