Ec-00_000150.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_000150.2
Unique NameEc-00_000150.2
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length311
Homology
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BLAST of Ec-00_000150.2 vs. uniprot
Match: D7FH33_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH33_ECTSI)

HSP 1 Score: 288 bits (736), Expect = 9.460e-93
Identity = 137/140 (97.86%), Postives = 138/140 (98.57%), Query Frame = 3 
Query:  195 MHSLWTRKTRTWGYEVIRGIDEDDPWRVIRAFRRPTGLAFVDLNTQVEIDYGGYAWTQWMHRHFGDTALHIALKWKRYRAVKAILSLRPNWTIPNEAGVTAEQLVLRLYGKSMARFKDEQEREYENDAMRAEEEAMRKCV 614
            MHSLWTRKTRTWGYEVIRGIDEDDPWRVIRAFRRPTGLAFVDLNTQVEIDYGGYAWTQWMHRHFGDTALHIALKWKRYRAVKAILSLRPNWTIPNEAGVTAEQLVLRLYGKSMARFKDEQEREYENDAMRAEEEAMR  +
Sbjct:    1 MHSLWTRKTRTWGYEVIRGIDEDDPWRVIRAFRRPTGLAFVDLNTQVEIDYGGYAWTQWMHRHFGDTALHIALKWKRYRAVKAILSLRPNWTIPNEAGVTAEQLVLRLYGKSMARFKDEQEREYENDAMRAEEEAMRNLM 140
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BLAST of Ec-00_000150.2 vs. uniprot
Match: A0A835Z280_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z280_9STRA)

HSP 1 Score: 118 bits (295), Expect = 3.480e-28
Identity = 65/136 (47.79%), Postives = 87/136 (63.97%), Query Frame = 3 
Query:  198 HSLWTRKTR-TWGYEVIRGIDEDDPWRVIRAFRRPTGLAFVDLNTQVEIDYGGYAWTQWMHRHFGDTALHIALKWKRYRAVKAILSLRPNWTIPNEAGVTAEQLVLRLYGKSMARFKDEQEREYENDAMRAEEEAM 602
            H+  TR+ R  WG++ IR ID+DDP  V+RA++ P   A VD   Q  + YG YA+TQ M  H GDTALH+ALKW++ RA KA+L L   W I N  GVTAE ++++ + K M   K +QEREY   AM  E++ M
Sbjct:    3 HNATTRRLRGCWGFDAIRAIDQDDPALVLRAYKLP--FADVDHVVQKHL-YGDYAFTQRMDLHEGDTALHLALKWRKMRAAKALLHLNARWDIVNAQGVTAEAILMKEHLKPMLTLKAQQEREYATQAMACEDDLM 135
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BLAST of Ec-00_000150.2 vs. uniprot
Match: A0A7S3Y2N4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2N4_HETAK)

HSP 1 Score: 97.1 bits (240), Expect = 1.790e-20
Identity = 55/125 (44.00%), Postives = 71/125 (56.80%), Query Frame = 3 
Query:  219 TRTWGYEVIRGIDEDDPWRVIRAFRRPTGLAFVDLNTQVEIDYGGYAWTQWMHRHFGDTALHIALKWKRYRAVKAILSLRPNWTIPNEAGVTAEQLVLRLYGKSMARFKDEQEREYENDAMRAEE 593
            T +WGYEVIRGIDEDD  RV  A R   G     +N QV  +YGGY WT  +H ++GDTA+H+A+K+ R R  + +L L P+ T+ N  G TA +L    Y K +         E   D M AEE
Sbjct:   10 TSSWGYEVIRGIDEDDHERVTEALRSWRGKK---INIQVGEEYGGYRWTARLHEYYGDTAVHLAIKFSRPRIFRKLLLLAPDLTLYNGQGQTAAELAESTYKKPIKALVRAAWEEETRDRMAAEE 131
[Close]
BLAST of Ec-00_000150.2 vs. uniprot
Match: A0A7S2C3Y6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C3Y6_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.790e-9
Identity = 38/102 (37.25%), Postives = 57/102 (55.88%), Query Frame = 3 
Query:  351 GYAWTQWMHRHFGDTALHIALKWKRYRAVKAILSL---RPN-----------WTIPNEAGVTAEQLVLRLYGKSMARFKDEQEREYENDAMRAEEEAMRKCV 614
            GYAW+ W HR  GDT LH+A++WKRY+A+K +  L   RP+           + + +  G TAE LV   +G+++A    +QE+    D + A EEA R+  
Sbjct:    1 GYAWSAWSHRMAGDTVLHLAMRWKRYKALKGLYRLPAQRPDGMVGAGQPFFDYDVRDVDGQTAESLVTAEFGRTIANLWTKQEK----DDIEAAEEAARQAA 98
The following BLAST results are available for this feature:
BLAST of Ec-00_000150.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FH33_ECTSI9.460e-9397.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z280_9STRA3.480e-2847.79Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S3Y2N4_HETAK1.790e-2044.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2C3Y6_9STRA1.790e-937.25Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:283457..285886 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length1130
Hectar predicted targeting categoryother localisation
Gene idEc-00_000150.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000150Ec-00_000150Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 283457..285886 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000150.2Ec-00_000150.2Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 283459..285691 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000150.2.4Ec-00_000150.2.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 283457..283564 -
Ec-00_000150.2.3Ec-00_000150.2.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 284036..284439 -
Ec-00_000150.2.2Ec-00_000150.2.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 284858..285142 -
Ec-00_000150.2.1Ec-00_000150.2.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 285554..285886 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0001503UTR:Ec-00_000150.2Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 283457..283458 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000150.2CDS:Ec-00_000150.2Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 283459..283564 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0001505UTR:Ec-00_000150.2Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 285692..285886 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_000150.2 ID=Ec-00_000150.2|Name=Ec-00_000150.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=311bp
MHSLWTRKTRTWGYEVIRGIDEDDPWRVIRAFRRPTGLAFVDLNTQVEID
YGGYAWTQWMHRHFGDTALHIALKWKRYRAVKAILSLRPNWTIPNEAGVT
AEQLVLRLYGKSMARFKDEQEREYENDAMRAEEEAMRKCVEPHGRRTSGA
RQGPPGLPRSATRRTYHRHRPRSSHPTRARPSSYHRRGQVQREQPPPPPT
RCRRQHRPELTERHQPRRRFQRLGEARLPRAAAKSLRRAPGRDASKRRAG
SRPSTRPRRRWSPTPFADDNGSISISWQRGKHEDDGEEEGLAVPDEPEKC
WHALEERQKEA
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spliced messenger RNA

>Ec-00_000150.2 ID=Ec-00_000150.2|Name=Ec-00_000150.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1130bp|location=Sequence derived from alignment at chr_00:283457..285886- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
GCACGGCGGTGGACAGGCGCTCGCCGAGCGTAGACGCAAGTATGCAGACG
CACGTTTCGACATGCCTCTCCTCTCGTACGAGATGATCGCAACACCCTGC
TGCTTGAACGTGTTGTATTTACTTCGTGGACGAGAGTCCGACGACGCGCT
GTAGTTCACGACCTGGACGGTGGATCCTAAACCAAGAAAAGAGAAATGCA
CTCCCTGTGGACCCGCAAAACACGAACCTGGGGCTACGAAGTCATTCGAG
GGATAGATGAAGATGATCCCTGGCGCGTCATTCGGGCTTTCAGGCGCCCG
ACTGGGCTGGCTTTCGTCGACCTAAACACTCAGGTGGAGATTGACTATGG
AGGCTATGCATGGACCCAGTGGATGCACCGACACTTTGGAGACACCGCCC
TCCATATTGCTCTCAAGTGGAAACGGTATCGAGCGGTCAAAGCGATACTG
TCGCTACGCCCGAACTGGACAATCCCAAACGAGGCTGGCGTCACCGCAGA
ACAGCTCGTTCTCCGGCTGTACGGCAAGAGCATGGCGAGATTTAAGGACG
AGCAGGAACGCGAGTACGAGAACGACGCGATGCGAGCGGAAGAAGAAGCT
ATGAGAAAGTGCGTAGAGCCTCATGGCCGCCGAACAAGCGGCGCGAGACA
AGGCCCGCCTGGACTTCCTCGAAGCGCAACACGCCGCACGTACCATCGGC
ATCGACCACGAAGCAGCCATCCTACTCGAGCACGGCCGAGTAGTTATCAC
AGACGGGGGCAAGTCCAACGGGAACAACCACCGCCACCACCCACACGATG
CCGCAGACAACACCGACCCGAGCTCACAGAGCGACACCAGCCGCGCCGCC
GATTCCAGCGGCTGGGTGAAGCACGTCTGCCGAGAGCTGCGGCGAAATCG
CTTCGCCGCGCACCTGGGAGAGATGCGTCGAAACGTCGTGCCGGCTCGCG
CCCCTCCACGCGTCCCCGCCGCCGCTGGAGTCCCACCCCTTTCGCCGACG
ACAACGGCAGCATCAGCATCAGTTGGCAACGGGGCAAGCACGAGGACGAC
GGCGAAGAAGAAGGCCTTGCGGTCCCCGACGAGCCCGAAAAGTGTTGGCA
CGCCCTCGAGGAGAGGCAGAAAGAGGCGAG
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protein sequence of Ec-00_000150.2

>Ec-00_000150.2 ID=Ec-00_000150.2|Name=Ec-00_000150.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=311bp
MHSLWTRKTRTWGYEVIRGIDEDDPWRVIRAFRRPTGLAFVDLNTQVEID
YGGYAWTQWMHRHFGDTALHIALKWKRYRAVKAILSLRPNWTIPNEAGVT
AEQLVLRLYGKSMARFKDEQEREYENDAMRAEEEAMRKCVEPHGRRTSGA
RQGPPGLPRSATRRTYHRHRPRSSHPTRARPSSYHRRGQVQREQPPPPPT
RCRRQHRPELTERHQPRRRFQRLGEARLPRAAAKSLRRAPGRDASKRRAG
SRPSTRPRRRWSPTPFADDNGSISISWQRGKHEDDGEEEGLAVPDEPEKC
WHALEERQKEA
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mRNA from alignment at chr_00:283457..285886-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_000150.2 ID=Ec-00_000150.2|Name=Ec-00_000150.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2430bp|location=Sequence derived from alignment at chr_00:283457..285886- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
GCACGGCGGTGGACAGGCGCTCGCCGAGCGTAGACGCAAGTATGCAGACG
CACGTTTCGACATGCCTCTCCTCTCGTACGAGATGATCGCAACACCCTGC
TGCTTGAACGTGTTGTATTTACTTCGTGGACGAGAGTCCGACGACGCGCT
GTAGTTCACGACCTGGACGGTGGATCCTAAACCAAGAAAAGAGAAATGCA
CTCCCTGTGGACCCGCAAAACACGAACCTGGGGCTACGAAGTCATTCGAG
GGATAGATGAAGATGATCCCTGGCGCGTCATTCGGGCTTTCAGGCGCCCG
ACTGGGCTGGCTTTCGTCGACCTAAACACTCAGGTCCGTATGCTACAACA
GCACTACAACTAACAGCAGCTGTAGATCTCCGGTGTCTCCGGTGATGCAG
ACTGCGGGATGTCGCTGGGTTCGAAGAGGACCTTGCGTTGTGCATGTTGT
TTTCCGTGCTGGGTTTATTTTCGTCGTCTTGGCTGGGGAAACCATTTCAG
CATGGAGTGCTGGCACCGTCAACTTTGGGCTTTGTTCTTCGAGAGATACA
AGGTGCAACCTCAGGTAGACCCTCTTACAGCAGTCGTCCCGACGCGCAAT
CTACTTACACGTGTAGACTATGCTGTTCCTACGCGTTGCGTCGAAAATGA
AATCATGATCCGACACAGTCTTACTCGGCGACCTGCTGTTGTCGTTGTGA
CATGTCGAACACAACCTGCGTCCCGTCATCCAAATCAATCAAAGGTGGAG
ATTGACTATGGAGGCTATGCATGGACCCAGTGGATGCACCGACACTTTGG
AGACACCGCCCTCCATATTGCTCTCAAGTGGAAACGGTATCGAGCGGTCA
AAGCGATACTGTCGCTACGCCCGAACTGGACAATCCCAAACGAGGCTGGC
GTCACCGCAGAACAGCTCGTTCTCCGGCTGTACGGCAAGAGCATGGCGAG
ATTTAAGGACGAGCAGGAACGCGAGTACGAGAACGACGCGATGCGAGCGG
AAGAAGAAGCTATGAGAAAGTGCGTAGAGGTATGTAGGAACACTTTGATT
TCATGTCGCGAATAGTCTGTAGACTATATACATCCACAGCAGTAATAGAA
TGCAAGACTCGTACGTTTATGGATCAGTACGGACATACGAAGGTACTGGG
TAGAGAGAGATCGGAACGGTTTTCAATGTGAAGACAACAACAACAACAAC
AACCCTCAGGGTTACTCATCACCTACAAAGTGCAAAATCACCACCCTATG
AGTGTGAAGGCACCAACGGCCAATGTTCGCGATTCGCCTCTCTGCCTGTG
GCCGACCATCCACTTAATTAGAAAAACGCGGTGTCGTTCTTGCCTCGTGT
CAACCTAGCAACATGCGTGGGGGGGTTTCTACCTACATTCCGCTGTTGCA
AGCACCGAACGTCACGATATTTCCCCCCTGCCCCTCTCCCCTGGCAGCCT
CATGGCCGCCGAACAAGCGGCGCGAGACAAGGCCCGCCTGGACTTCCTCG
AAGCGCAACACGCCGCACGTACCATCGGCATCGACCACGAAGCAGCCATC
CTACTCGAGCACGGCCGAGTAGTTATCACAGACGGGGGCAAGTCCAACGG
GAACAACCACCGCCACCACCCACACGATGCCGCAGACAACACCGACCCGA
GCTCACAGAGCGACACCAGCCGCGCCGCCGATTCCAGCGGCTGGGTGAAG
CACGTCTGCCGAGAGCTGCGGCGAAATCGCTTCGCCGCGCACCTGGGAGA
GATGCGTCGAAACGTCGTGCCGGCTCGCGCCCCTCCACGCGTCCCCGCCG
CCGCTGGAGTCCCACCCCTTTCGCCGACGACAACGGCAGCATCAGCATCA
GGTTGGTGTTTGGGGGTACTCGGCAAAGTCGTGATCTACGGGGCCTCCGG
GGGTGGAGGGGGGGTACTCACTGCTGTGCATGTCGTAGTCGATAGACCAT
TGACCTTGCATCCCTACAAAGCTGGGACTGAGCACGCCGGGTTCTCACCG
GACCAGTCTCTCACATCAACACTCGGGGGTGGGGGGTACGCGGAATATAT
GATGGTTATGATGGACATGACTCGCGGGGTCCCTCTTGTCTGCCACTCGT
TAAAGATACAAGGTCTGGAGTCAACCTCCCTTTCACTTTCGGCCTATCTG
ACCAAGCTAGCTGCCGCACCCAAACCAGGCTAGGTCGTGAGGCAACTTTC
TTAACCTTTCGGCCTATATAGCTGAAAGCTAGCTGCTGCACCCAAACAGC
AGTTGGCAAGGTCGTGAGACAACCTTCTTTCTCTTTCGGCCTCGCTGACA
CCTAACTGCTGCCCCCAAAAAGTTGGCAACGGGGCAAGCACGAGGACGAC
GGCGAAGAAGAAGGCCTTGCGGTCCCCGACGAGCCCGAAAAGTGTTGGCA
CGCCCTCGAGGAGAGGCAGAAAGAGGCGAG
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Coding sequence (CDS) from alignment at chr_00:283457..285886-

>Ec-00_000150.2 ID=Ec-00_000150.2|Name=Ec-00_000150.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=933bp|location=Sequence derived from alignment at chr_00:283457..285886- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCACTCCCTGTGGACCCGCAAAACACGAACCTGGGGCTACGAAGTCAT
TCGAGGGATAGATGAAGATGATCCCTGGCGCGTCATTCGGGCTTTCAGGC
GCCCGACTGGGCTGGCTTTCGTCGACCTAAACACTCAGGTGGAGATTGAC
TATGGAGGCTATGCATGGACCCAGTGGATGCACCGACACTTTGGAGACAC
CGCCCTCCATATTGCTCTCAAGTGGAAACGGTATCGAGCGGTCAAAGCGA
TACTGTCGCTACGCCCGAACTGGACAATCCCAAACGAGGCTGGCGTCACC
GCAGAACAGCTCGTTCTCCGGCTGTACGGCAAGAGCATGGCGAGATTTAA
GGACGAGCAGGAACGCGAGTACGAGAACGACGCGATGCGAGCGGAAGAAG
AAGCTATGAGAAAGTGCGTAGAGCCTCATGGCCGCCGAACAAGCGGCGCG
AGACAAGGCCCGCCTGGACTTCCTCGAAGCGCAACACGCCGCACGTACCA
TCGGCATCGACCACGAAGCAGCCATCCTACTCGAGCACGGCCGAGTAGTT
ATCACAGACGGGGGCAAGTCCAACGGGAACAACCACCGCCACCACCCACA
CGATGCCGCAGACAACACCGACCCGAGCTCACAGAGCGACACCAGCCGCG
CCGCCGATTCCAGCGGCTGGGTGAAGCACGTCTGCCGAGAGCTGCGGCGA
AATCGCTTCGCCGCGCACCTGGGAGAGATGCGTCGAAACGTCGTGCCGGC
TCGCGCCCCTCCACGCGTCCCCGCCGCCGCTGGAGTCCCACCCCTTTCGC
CGACGACAACGGCAGCATCAGCATCAGTTGGCAACGGGGCAAGCACGAGG
ACGACGGCGAAGAAGAAGGCCTTGCGGTCCCCGACGAGCCCGAAAAGTGT
TGGCACGCCCTCGAGGAGAGGCAGAAAGAGGCG
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Synonyms
The feature 'Ec-00_000150.2' has the following synonyms
Synonym
Esi1041_0001
Esi_1041_0001