Ec-00_000150.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_000150.1
Unique NameEc-00_000150.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length308
Homology
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BLAST of Ec-00_000150.1 vs. uniprot
Match: D7FH33_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH33_ECTSI)

HSP 1 Score: 537 bits (1383), Expect = 4.510e-191
Identity = 272/272 (100.00%), Postives = 272/272 (100.00%), Query Frame = 3 
Query:  195 MHSLWTRKTRTWGYEVIRGIDEDDPWRVIRAFRRPTGLAFVDLNTQVEIDYGGYAWTQWMHRHFGDTALHIALKWKRYRAVKAILSLRPNWTIPNEAGVTAEQLVLRLYGKSMARFKDEQEREYENDAMRAEEEAMRNLMAAEQAARDKARLDFLEAQHAARTIGIDHEAAILLEHGRVVITDGGKSNGNNHRHHPHDAADNTDPSSQSDTSRAADSSGWVKHVCRELRRNRFAAHLGEMRRNVVPARAPPRVPAAAGVPPLSPTTTAASAS 1010
            MHSLWTRKTRTWGYEVIRGIDEDDPWRVIRAFRRPTGLAFVDLNTQVEIDYGGYAWTQWMHRHFGDTALHIALKWKRYRAVKAILSLRPNWTIPNEAGVTAEQLVLRLYGKSMARFKDEQEREYENDAMRAEEEAMRNLMAAEQAARDKARLDFLEAQHAARTIGIDHEAAILLEHGRVVITDGGKSNGNNHRHHPHDAADNTDPSSQSDTSRAADSSGWVKHVCRELRRNRFAAHLGEMRRNVVPARAPPRVPAAAGVPPLSPTTTAASAS
Sbjct:    1 MHSLWTRKTRTWGYEVIRGIDEDDPWRVIRAFRRPTGLAFVDLNTQVEIDYGGYAWTQWMHRHFGDTALHIALKWKRYRAVKAILSLRPNWTIPNEAGVTAEQLVLRLYGKSMARFKDEQEREYENDAMRAEEEAMRNLMAAEQAARDKARLDFLEAQHAARTIGIDHEAAILLEHGRVVITDGGKSNGNNHRHHPHDAADNTDPSSQSDTSRAADSSGWVKHVCRELRRNRFAAHLGEMRRNVVPARAPPRVPAAAGVPPLSPTTTAASAS 272
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BLAST of Ec-00_000150.1 vs. uniprot
Match: A0A835Z280_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z280_9STRA)

HSP 1 Score: 135 bits (341), Expect = 6.300e-35
Identity = 79/180 (43.89%), Postives = 109/180 (60.56%), Query Frame = 3 
Query:  198 HSLWTRKTR-TWGYEVIRGIDEDDPWRVIRAFRRPTGLAFVDLNTQVEIDYGGYAWTQWMHRHFGDTALHIALKWKRYRAVKAILSLRPNWTIPNEAGVTAEQLVLRLYGKSMARFKDEQEREYENDAMRAEEEAMRNLMAAEQAARDKARLDFLEAQHAARTIGIDHEAAILLEHGRVV 734
            H+  TR+ R  WG++ IR ID+DDP  V+RA++ P   A VD   Q  + YG YA+TQ M  H GDTALH+ALKW++ RA KA+L L   W I N  GVTAE ++++ + K M   K +QEREY   AM  E++ M  L+A EQ+ +     D L   +  RT G   EA +L+  GR++
Sbjct:    3 HNATTRRLRGCWGFDAIRAIDQDDPALVLRAYKLP--FADVDHVVQKHL-YGDYAFTQRMDLHEGDTALHLALKWRKMRAAKALLHLNARWDIVNAQGVTAEAILMKEHLKPMLTLKAQQEREYATQAMACEDDLMHTLLAHEQSMQQAMSADKLRQLNELRTAGAAQEAMLLMMAGRIM 179
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BLAST of Ec-00_000150.1 vs. uniprot
Match: A0A7S3Y2N4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2N4_HETAK)

HSP 1 Score: 97.1 bits (240), Expect = 1.720e-20
Identity = 60/145 (41.38%), Postives = 79/145 (54.48%), Query Frame = 3 
Query:  219 TRTWGYEVIRGIDEDDPWRVIRAFRRPTGLAFVDLNTQVEIDYGGYAWTQWMHRHFGDTALHIALKWKRYRAVKAILSLRPNWTIPNEAGVTAEQLVLRLYGKSMARFKDEQEREYENDAMRAEEEAMRNLMAAEQAARDKARLD 653
            T +WGYEVIRGIDEDD  RV  A R   G     +N QV  +YGGY WT  +H ++GDTA+H+A+K+ R R  + +L L P+ T+ N  G TA +L    Y K +         E   D M AEE   R  +      R++A LD
Sbjct:   10 TSSWGYEVIRGIDEDDHERVTEALRSWRGKK---INIQVGEEYGGYRWTARLHEYYGDTAVHLAIKFSRPRIFRKLLLLAPDLTLYNGQGQTAAELAESTYKKPIKALVRAAWEEETRDRMAAEEAYERRRL------REQAELD 145
[Close]
BLAST of Ec-00_000150.1 vs. uniprot
Match: A0A7S2C3Y6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C3Y6_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.290e-9
Identity = 42/112 (37.50%), Postives = 61/112 (54.46%), Query Frame = 3 
Query:  351 GYAWTQWMHRHFGDTALHIALKWKRYRAVKAILSL---RPN-----------WTIPNEAGVTAEQLVLRLYGKSMARFKDEQEREYENDAMRAEEEAMRNLMAAEQAARDKA 644
            GYAW+ W HR  GDT LH+A++WKRY+A+K +  L   RP+           + + +  G TAE LV   +G+++A    +QE+    D + A EEA R      +AAR  A
Sbjct:    1 GYAWSAWSHRMAGDTVLHLAMRWKRYKALKGLYRLPAQRPDGMVGAGQPFFDYDVRDVDGQTAESLVTAEFGRTIANLWTKQEK----DDIEAAEEAARQAALEAEAARSLA 108
The following BLAST results are available for this feature:
BLAST of Ec-00_000150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FH33_ECTSI4.510e-191100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z280_9STRA6.300e-3543.89Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S3Y2N4_HETAK1.720e-2041.38Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2C3Y6_9STRA1.290e-937.50Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:283457..285886 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length1120
Hectar predicted targeting categoryother localisation
Gene idEc-00_000150.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000150Ec-00_000150Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 283457..285886 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000150.1Ec-00_000150.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 283458..285691 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000150.1.4Ec-00_000150.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 283457..283564 -
Ec-00_000150.1.3Ec-00_000150.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 284036..284439 -
Ec-00_000150.1.2Ec-00_000150.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 284868..285142 -
Ec-00_000150.1.1Ec-00_000150.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 285554..285886 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0001503UTR:Ec-00_000150.1Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 283457..283457 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000150.1CDS:Ec-00_000150.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 283458..283564 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0001505UTR:Ec-00_000150.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 285692..285886 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_000150.1 ID=Ec-00_000150.1|Name=Ec-00_000150.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=308bp
MHSLWTRKTRTWGYEVIRGIDEDDPWRVIRAFRRPTGLAFVDLNTQVEID
YGGYAWTQWMHRHFGDTALHIALKWKRYRAVKAILSLRPNWTIPNEAGVT
AEQLVLRLYGKSMARFKDEQEREYENDAMRAEEEAMRNLMAAEQAARDKA
RLDFLEAQHAARTIGIDHEAAILLEHGRVVITDGGKSNGNNHRHHPHDAA
DNTDPSSQSDTSRAADSSGWVKHVCRELRRNRFAAHLGEMRRNVVPARAP
PRVPAAAGVPPLSPTTTAASASVGNGASTRTTAKKKALRSPTSPKSVGTP
SRRGRKRR
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spliced messenger RNA

>Ec-00_000150.1 ID=Ec-00_000150.1|Name=Ec-00_000150.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1120bp|location=Sequence derived from alignment at chr_00:283457..285886- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
GCACGGCGGTGGACAGGCGCTCGCCGAGCGTAGACGCAAGTATGCAGACG
CACGTTTCGACATGCCTCTCCTCTCGTACGAGATGATCGCAACACCCTGC
TGCTTGAACGTGTTGTATTTACTTCGTGGACGAGAGTCCGACGACGCGCT
GTAGTTCACGACCTGGACGGTGGATCCTAAACCAAGAAAAGAGAAATGCA
CTCCCTGTGGACCCGCAAAACACGAACCTGGGGCTACGAAGTCATTCGAG
GGATAGATGAAGATGATCCCTGGCGCGTCATTCGGGCTTTCAGGCGCCCG
ACTGGGCTGGCTTTCGTCGACCTAAACACTCAGGTGGAGATTGACTATGG
AGGCTATGCATGGACCCAGTGGATGCACCGACACTTTGGAGACACCGCCC
TCCATATTGCTCTCAAGTGGAAACGGTATCGAGCGGTCAAAGCGATACTG
TCGCTACGCCCGAACTGGACAATCCCAAACGAGGCTGGCGTCACCGCAGA
ACAGCTCGTTCTCCGGCTGTACGGCAAGAGCATGGCGAGATTTAAGGACG
AGCAGGAACGCGAGTACGAGAACGACGCGATGCGAGCGGAAGAAGAAGCT
ATGAGAAACCTCATGGCCGCCGAACAAGCGGCGCGAGACAAGGCCCGCCT
GGACTTCCTCGAAGCGCAACACGCCGCACGTACCATCGGCATCGACCACG
AAGCAGCCATCCTACTCGAGCACGGCCGAGTAGTTATCACAGACGGGGGC
AAGTCCAACGGGAACAACCACCGCCACCACCCACACGATGCCGCAGACAA
CACCGACCCGAGCTCACAGAGCGACACCAGCCGCGCCGCCGATTCCAGCG
GCTGGGTGAAGCACGTCTGCCGAGAGCTGCGGCGAAATCGCTTCGCCGCG
CACCTGGGAGAGATGCGTCGAAACGTCGTGCCGGCTCGCGCCCCTCCACG
CGTCCCCGCCGCCGCTGGAGTCCCACCCCTTTCGCCGACGACAACGGCAG
CATCAGCATCAGTTGGCAACGGGGCAAGCACGAGGACGACGGCGAAGAAG
AAGGCCTTGCGGTCCCCGACGAGCCCGAAAAGTGTTGGCACGCCCTCGAG
GAGAGGCAGAAAGAGGCGAG
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protein sequence of Ec-00_000150.1

>Ec-00_000150.1 ID=Ec-00_000150.1|Name=Ec-00_000150.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=308bp
MHSLWTRKTRTWGYEVIRGIDEDDPWRVIRAFRRPTGLAFVDLNTQVEID
YGGYAWTQWMHRHFGDTALHIALKWKRYRAVKAILSLRPNWTIPNEAGVT
AEQLVLRLYGKSMARFKDEQEREYENDAMRAEEEAMRNLMAAEQAARDKA
RLDFLEAQHAARTIGIDHEAAILLEHGRVVITDGGKSNGNNHRHHPHDAA
DNTDPSSQSDTSRAADSSGWVKHVCRELRRNRFAAHLGEMRRNVVPARAP
PRVPAAAGVPPLSPTTTAASASVGNGASTRTTAKKKALRSPTSPKSVGTP
SRRGRKRR
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mRNA from alignment at chr_00:283457..285886-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_000150.1 ID=Ec-00_000150.1|Name=Ec-00_000150.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2430bp|location=Sequence derived from alignment at chr_00:283457..285886- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
GCACGGCGGTGGACAGGCGCTCGCCGAGCGTAGACGCAAGTATGCAGACG
CACGTTTCGACATGCCTCTCCTCTCGTACGAGATGATCGCAACACCCTGC
TGCTTGAACGTGTTGTATTTACTTCGTGGACGAGAGTCCGACGACGCGCT
GTAGTTCACGACCTGGACGGTGGATCCTAAACCAAGAAAAGAGAAATGCA
CTCCCTGTGGACCCGCAAAACACGAACCTGGGGCTACGAAGTCATTCGAG
GGATAGATGAAGATGATCCCTGGCGCGTCATTCGGGCTTTCAGGCGCCCG
ACTGGGCTGGCTTTCGTCGACCTAAACACTCAGGTCCGTATGCTACAACA
GCACTACAACTAACAGCAGCTGTAGATCTCCGGTGTCTCCGGTGATGCAG
ACTGCGGGATGTCGCTGGGTTCGAAGAGGACCTTGCGTTGTGCATGTTGT
TTTCCGTGCTGGGTTTATTTTCGTCGTCTTGGCTGGGGAAACCATTTCAG
CATGGAGTGCTGGCACCGTCAACTTTGGGCTTTGTTCTTCGAGAGATACA
AGGTGCAACCTCAGGTAGACCCTCTTACAGCAGTCGTCCCGACGCGCAAT
CTACTTACACGTGTAGACTATGCTGTTCCTACGCGTTGCGTCGAAAATGA
AATCATGATCCGACACAGTCTTACTCGGCGACCTGCTGTTGTCGTTGTGA
CATGTCGAACACAACCTGCGTCCCGTCATCCAAATCAATCAAAGGTGGAG
ATTGACTATGGAGGCTATGCATGGACCCAGTGGATGCACCGACACTTTGG
AGACACCGCCCTCCATATTGCTCTCAAGTGGAAACGGTATCGAGCGGTCA
AAGCGATACTGTCGCTACGCCCGAACTGGACAATCCCAAACGAGGCTGGC
GTCACCGCAGAACAGCTCGTTCTCCGGCTGTACGGCAAGAGCATGGCGAG
ATTTAAGGACGAGCAGGAACGCGAGTACGAGAACGACGCGATGCGAGCGG
AAGAAGAAGCTATGAGAAAGTGCGTAGAGGTATGTAGGAACACTTTGATT
TCATGTCGCGAATAGTCTGTAGACTATATACATCCACAGCAGTAATAGAA
TGCAAGACTCGTACGTTTATGGATCAGTACGGACATACGAAGGTACTGGG
TAGAGAGAGATCGGAACGGTTTTCAATGTGAAGACAACAACAACAACAAC
AACCCTCAGGGTTACTCATCACCTACAAAGTGCAAAATCACCACCCTATG
AGTGTGAAGGCACCAACGGCCAATGTTCGCGATTCGCCTCTCTGCCTGTG
GCCGACCATCCACTTAATTAGAAAAACGCGGTGTCGTTCTTGCCTCGTGT
CAACCTAGCAACATGCGTGGGGGGGTTTCTACCTACATTCCGCTGTTGCA
AGCACCGAACGTCACGATATTTCCCCCCTGCCCCTCTCCCCTGGCAGCCT
CATGGCCGCCGAACAAGCGGCGCGAGACAAGGCCCGCCTGGACTTCCTCG
AAGCGCAACACGCCGCACGTACCATCGGCATCGACCACGAAGCAGCCATC
CTACTCGAGCACGGCCGAGTAGTTATCACAGACGGGGGCAAGTCCAACGG
GAACAACCACCGCCACCACCCACACGATGCCGCAGACAACACCGACCCGA
GCTCACAGAGCGACACCAGCCGCGCCGCCGATTCCAGCGGCTGGGTGAAG
CACGTCTGCCGAGAGCTGCGGCGAAATCGCTTCGCCGCGCACCTGGGAGA
GATGCGTCGAAACGTCGTGCCGGCTCGCGCCCCTCCACGCGTCCCCGCCG
CCGCTGGAGTCCCACCCCTTTCGCCGACGACAACGGCAGCATCAGCATCA
GGTTGGTGTTTGGGGGTACTCGGCAAAGTCGTGATCTACGGGGCCTCCGG
GGGTGGAGGGGGGGTACTCACTGCTGTGCATGTCGTAGTCGATAGACCAT
TGACCTTGCATCCCTACAAAGCTGGGACTGAGCACGCCGGGTTCTCACCG
GACCAGTCTCTCACATCAACACTCGGGGGTGGGGGGTACGCGGAATATAT
GATGGTTATGATGGACATGACTCGCGGGGTCCCTCTTGTCTGCCACTCGT
TAAAGATACAAGGTCTGGAGTCAACCTCCCTTTCACTTTCGGCCTATCTG
ACCAAGCTAGCTGCCGCACCCAAACCAGGCTAGGTCGTGAGGCAACTTTC
TTAACCTTTCGGCCTATATAGCTGAAAGCTAGCTGCTGCACCCAAACAGC
AGTTGGCAAGGTCGTGAGACAACCTTCTTTCTCTTTCGGCCTCGCTGACA
CCTAACTGCTGCCCCCAAAAAGTTGGCAACGGGGCAAGCACGAGGACGAC
GGCGAAGAAGAAGGCCTTGCGGTCCCCGACGAGCCCGAAAAGTGTTGGCA
CGCCCTCGAGGAGAGGCAGAAAGAGGCGAG
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Coding sequence (CDS) from alignment at chr_00:283457..285886-

>Ec-00_000150.1 ID=Ec-00_000150.1|Name=Ec-00_000150.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=924bp|location=Sequence derived from alignment at chr_00:283457..285886- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCACTCCCTGTGGACCCGCAAAACACGAACCTGGGGCTACGAAGTCAT
TCGAGGGATAGATGAAGATGATCCCTGGCGCGTCATTCGGGCTTTCAGGC
GCCCGACTGGGCTGGCTTTCGTCGACCTAAACACTCAGGTGGAGATTGAC
TATGGAGGCTATGCATGGACCCAGTGGATGCACCGACACTTTGGAGACAC
CGCCCTCCATATTGCTCTCAAGTGGAAACGGTATCGAGCGGTCAAAGCGA
TACTGTCGCTACGCCCGAACTGGACAATCCCAAACGAGGCTGGCGTCACC
GCAGAACAGCTCGTTCTCCGGCTGTACGGCAAGAGCATGGCGAGATTTAA
GGACGAGCAGGAACGCGAGTACGAGAACGACGCGATGCGAGCGGAAGAAG
AAGCTATGAGAAACCTCATGGCCGCCGAACAAGCGGCGCGAGACAAGGCC
CGCCTGGACTTCCTCGAAGCGCAACACGCCGCACGTACCATCGGCATCGA
CCACGAAGCAGCCATCCTACTCGAGCACGGCCGAGTAGTTATCACAGACG
GGGGCAAGTCCAACGGGAACAACCACCGCCACCACCCACACGATGCCGCA
GACAACACCGACCCGAGCTCACAGAGCGACACCAGCCGCGCCGCCGATTC
CAGCGGCTGGGTGAAGCACGTCTGCCGAGAGCTGCGGCGAAATCGCTTCG
CCGCGCACCTGGGAGAGATGCGTCGAAACGTCGTGCCGGCTCGCGCCCCT
CCACGCGTCCCCGCCGCCGCTGGAGTCCCACCCCTTTCGCCGACGACAAC
GGCAGCATCAGCATCAGTTGGCAACGGGGCAAGCACGAGGACGACGGCGA
AGAAGAAGGCCTTGCGGTCCCCGACGAGCCCGAAAAGTGTTGGCACGCCC
TCGAGGAGAGGCAGAAAGAGGCGA
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Synonyms
The feature 'Ec-00_000150.1' has the following synonyms
Synonym
Esi1041_0001
Esi_1041_0001