Ec-00_000140.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ec-00_000140.1
Unique Name	Ec-00_000140.1
Type	mRNA
Organism	Ectocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length	915

Homology

[Close]

BLAST of Ec-00_000140.1 vs. uniprot
Match: D7FGY7_ECTSI (BRCT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGY7_ECTSI)

HSP 1 Score: 1105 bits (2859), Expect = 0.000e+0
Identity = 720/720 (100.00%), Postives = 720/720 (100.00%), Query Frame = 1

Query:    1 MEVGGSGDGGGAVVPEARDCTRDRCQEPTADQLNDPVFRGRMKARTRAAKAXXXXXXXSIGGNPASGNGGGSALTGARCQPDKRIHQVGWVDDVGRGLQGKRGGGGGVEQRQAVGFNGWMSSRRQDWGLDDVGLPAAQSRGVGSAAPSASRLSRSKTXXXXXXXXXXXXXXXXXXXXXXXXARAKPTAERLTGPSLGGKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGCGCNGGTRPRSIGVGPRSHAKKKSRGNKEGVGEDAGAVAAIPAVPAAAVGSADSTRADKTLTSSPSPRQRKKTSGSVRCREVSHEGGRGIPAKKCCRQQRARSSAAAVAVSPVTSAARQHHRSHGPRGEKMLRQASVQAAGTAAAAPTPTTENVRDSPAAAAAATAAGRIGPFFGLSLVLVGLPDDVHREVDRTIVACGGRVLEDLPPPKTRGGLALRRPAAGAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVVVVSVPSASRLPRYVLAIATGTPLLHHLWVSDSAAEARPLPASPYLLPGAREASRXXXXXXXXXXXXXXXXXXXXXXXXGHKASHVALAKAVSKTGTPLMGMAIGVAHPSPTTCERWAQVLRAAGAQTVLRVTGDPLLVLLAPREETAVGTRTSSPSRGTWSCSRGRRTAGASSSSSSSLQAEQLAGLDCVLCDFPGAWNGSGGGDDGECRAATGRRPVRGNGGVPAIAG 2160
            MEVGGSGDGGGAVVPEARDCTRDRCQEPTADQLNDPVFRGRMKARTRAAKAXXXXXXXSIGGNPASGNGGGSALTGARCQPDKRIHQVGWVDDVGRGLQGKRGGGGGVEQRQAVGFNGWMSSRRQDWGLDDVGLPAAQSRGVGSAAPSASRLSRSKTXXXXXXXXXXXXXXXXXXXXXXXXARAKPTAERLTGPSLGGKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGCGCNGGTRPRSIGVGPRSHAKKKSRGNKEGVGEDAGAVAAIPAVPAAAVGSADSTRADKTLTSSPSPRQRKKTSGSVRCREVSHEGGRGIPAKKCCRQQRARSSAAAVAVSPVTSAARQHHRSHGPRGEKMLRQASVQAAGTAAAAPTPTTENVRDSPAAAAAATAAGRIGPFFGLSLVLVGLPDDVHREVDRTIVACGGRVLEDLPPPKTRGGLALRRPAAGAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVVVVSVPSASRLPRYVLAIATGTPLLHHLWVSDSAAEARPLPASPYLLPGAREASRXXXXXXXXXXXXXXXXXXXXXXXXGHKASHVALAKAVSKTGTPLMGMAIGVAHPSPTTCERWAQVLRAAGAQTVLRVTGDPLLVLLAPREETAVGTRTSSPSRGTWSCSRGRRTAGASSSSSSSLQAEQLAGLDCVLCDFPGAWNGSGGGDDGECRAATGRRPVRGNGGVPAIAG
Sbjct:    1 MEVGGSGDGGGAVVPEARDCTRDRCQEPTADQLNDPVFRGRMKARTRAAKAXXXXXXXSIGGNPASGNGGGSALTGARCQPDKRIHQVGWVDDVGRGLQGKRGGGGGVEQRQAVGFNGWMSSRRQDWGLDDVGLPAAQSRGVGSAAPSASRLSRSKTXXXXXXXXXXXXXXXXXXXXXXXXARAKPTAERLTGPSLGGKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGCGCNGGTRPRSIGVGPRSHAKKKSRGNKEGVGEDAGAVAAIPAVPAAAVGSADSTRADKTLTSSPSPRQRKKTSGSVRCREVSHEGGRGIPAKKCCRQQRARSSAAAVAVSPVTSAARQHHRSHGPRGEKMLRQASVQAAGTAAAAPTPTTENVRDSPAAAAAATAAGRIGPFFGLSLVLVGLPDDVHREVDRTIVACGGRVLEDLPPPKTRGGLALRRPAAGAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVVVVSVPSASRLPRYVLAIATGTPLLHHLWVSDSAAEARPLPASPYLLPGAREASRXXXXXXXXXXXXXXXXXXXXXXXXGHKASHVALAKAVSKTGTPLMGMAIGVAHPSPTTCERWAQVLRAAGAQTVLRVTGDPLLVLLAPREETAVGTRTSSPSRGTWSCSRGRRTAGASSSSSSSLQAEQLAGLDCVLCDFPGAWNGSGGGDDGECRAATGRRPVRGNGGVPAIAG 720

[Close]

BLAST of Ec-00_000140.1 vs. uniprot
Match: A0A6H5L777_9PHAE (BRCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L777_9PHAE)

HSP 1 Score: 1065 bits (2753), Expect = 0.000e+0
Identity = 767/1025 (74.83%), Postives = 784/1025 (76.49%), Query Frame = 1

Query:    1 MEVGGSGDGGGAVVPEARDCTRDRCQEPTADQLNDPVFRGRMKARTRAAKAXXXXXXXSIGGNPASGNGGGSALTGARCQPDKRIHQVGWVDDVGRGLQGKRGGGGGVEQRQAVGFNGWMSSRRQDWGLDDVGLPAAQSRGVGSAAPSASRLSRSKTXXXXXXXXXXXXXXXXXXXXXXXXARAKPTAERLTGPSLGGKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGCGCNGG-TRPRSIGVGPRSHAKKKSRGNKEGVGEDAGAVAAIPAVPAAAVGSADSTRADKTLTSSPSPRQRKKTSGSVRCREVSHEGGRGIPAKKCCRQQRARSSAAAVAVSPVTSAARQHHRSHGPRGEKMLRQASVQAAGTAAAAPTPTTENVRDSPAAAAAATAAGRIGPFFGLSLVLVGLPDDVHREVDRTIVACGGRVLEDLPPPKTRGGLALRRPAAGAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVVVVSVPSASRLPRYVLAIATGTPLLHHLWVSDSAAEARPLPASPYLLPGAREASRXXXXXXXXXXXXXXXXXXXXXXXXGHKASHVALAKAVSKTGTPLMGMAIGVAHPSPTTCERWAQVLRAAGAQTVLRVTGDPLLVLLAPREETAVGTRTSSPSRGTWSCSRGRRTAGASSSSSSSLQAEQLAGLDCVLCDFPGAWNGSGGGDDGECRAATGRRPVRGNGGVPAIAGTTTKKAKSLPPPLSSLGLLFEAAKLEGVPVVALSWAMDCVIRGTRVRQQARPEYLTPFLDASAAAIRPSSRSQSLAGGTGTRLLVAVSRNGTRYEVSDHVYFSAAGRGRGXXXXXXXXXXXXXXXXXXXXXXXAAVGRIVHLERAGGSGGRVFATIEPLQIPDNK--------------------------------------------------------------------------------------------------------------GYCGRDPDVYVQQQRVPTARGPPNLRTGK 2742
            M VG SGDGGGAV PEARDCTRDRCQ+ TADQLNDPVFRGRMK RTRAA AXXXXXX + G N  SGNGGGSALTGARCQPD+RIHQ GWVDDVGRG QGKRG GG VEQRQA GFNGWMSSRRQDWGLDDVGLPAAQSRG  S+            XXXXXXXXXXXXXXXXXXXX    ARAKPTAE  TGPSLGGKS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         TRPRS+GVGPRSHAKKKSRGNKEGV EDAGAVAA         GSAD TRADKTLTSSPSP  R+KTSGSVRCREVSHEGGRGIPAKKCCRQQRA     A+AVSPVTSAARQHHRS GPRGEKMLRQASVQAAGTAAAAPTPT ENVRDSPAAA    A GR GP FGLSLVLVGLPDDVHR+V+RTIVA GGRVL+                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXX    VSVPSA RLPRYVLAIATGTPLLHHLWVSDSAAEARPLPASPYLLPGAREASR XXXXXXXXXXXXXXXX        HK S  ALAKAVSKTGTPL+GMAIGVAHPSPTTCERWAQVLRAAGAQTVLR+TGDPLL LL P+E+TA  T TSSPSRGT SCSRGRRTAGASSSSSSSLQA QLAGLDCVLCDFPGAWNGSGGGDD ECRAATGRRPVRGNGGVPAIAGT TKKAKS PPP SSLGL+FEAAKLEGVPVVALSWAMDCV+RGTRVRQQARPEYLTPFLDAS AA RPSSRSQSLAGGT TRLLVAVSR+GTRYEV DHVYFSAAG GRGXXXXXXXXXXXXXXXXXXXXXX A VGRIVHLERAGGSGGRVFATIEPLQIPDNK                                                                                                              GYCGRDPDVYVQQQRVPTARGPP LRTGK
Sbjct: 2186 MAVGASGDGGGAVFPEARDCTRDRCQKATADQLNDPVFRGRMKVRTRAANAXXXXXXSTCG-NTVSGNGGGSALTGARCQPDRRIHQAGWVDDVGRGQQGKRGRGG-VEQRQAAGFNGWMSSRRQDWGLDDVGLPAAQSRGAASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASA-ARAKPTAECFTGPSLGGKSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRPRSVGVGPRSHAKKKSRGNKEGVREDAGAVAAXXXXXXXXXGSADRTRADKTLTSSPSPGPRQKTSGSVRCREVSHEGGRGIPAKKCCRQQRATXXXXAMAVSPVTSAARQHHRSRGPRGEKMLRQASVQAAGTAAAAPTPTAENVRDSPAAAXXXXA-GRSGPLFGLSLVLVGLPDDVHRDVERTIVAGGGRVLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSVPSAFRLPRYVLAIATGTPLLHHLWVSDSAAEARPLPASPYLLPGAREASRRXXXXXXXXXXXXXXXXATAKAGGSHKVSRAALAKAVSKTGTPLLGMAIGVAHPSPTTCERWAQVLRAAGAQTVLRITGDPLL-LLPPQEKTADWT-TSSPSRGTRSCSRGRRTAGASSSSSSSLQAGQLAGLDCVLCDFPGAWNGSGGGDDTECRAATGRRPVRGNGGVPAIAGTATKKAKSSPPPFSSLGLVFEAAKLEGVPVVALSWAMDCVVRGTRVRQQARPEYLTPFLDASVAAGRPSSRSQSLAGGTDTRLLVAVSRSGTRYEVGDHVYFSAAGSGRGXXXXXXXXXXXXXXXXXXXXXXQAEVGRIVHLERAGGSGGRVFATIEPLQIPDNKRAVVSSLGDSGGRAAGGGSGALGRSFLQVVVRGGGGYFASPSADSSVSRGRARRARELKKVVLAEKKGSTAAGAGTRTPGSQNWQKVEVSDAFLLGRVSVLSAREFNSRRGYCGRDPDVYVQQQRVPTARGPPTLRTGK 3204

The following BLAST results are available for this feature:

BLAST of Ec-00_000140.1 vs. uniprot

BLAST of Ec-00_000140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7FGY7_ECTSI	0.000e+0	100.00	BRCT domain-containing protein n=1 Tax=Ectocarpus ...	[more]
A0A6H5L777_9PHAE	0.000e+0	74.83	BRCT domain-containing protein n=1 Tax=Ectocarpus ...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr_00	contig	chr_00:204820..207894 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR	2016-10-08

Properties


Property Name	Value
Length	2745
Hectar predicted targeting category	other localisation
Gene id	Ec-00_000140.1

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ec-00_000140	Ec-00_000140	Ectocarpus species7 Ec32 male_plus_femaleSDR	gene	chr_00 204820..207894 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_000140.1.1	Ec-00_000140.1.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 204820..207473 +
Ec-00_000140.1.2	Ec-00_000140.1.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 207804..207894 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_000140.1	CDS:Ec-00_000140.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	CDS	chr_00 204820..207473 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_000140.1	Ec-00_000140.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	polypeptide	chr_00 204820..207894 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at chr_00:204820..207894+
coding sequence from alignment at chr_00:204820..207894+

mRNA sequence

>Ec-00_000140.1 ID=Ec-00_000140.1|Name=Ec-00_000140.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=915bp
MEVGGSGDGGGAVVPEARDCTRDRCQEPTADQLNDPVFRGRMKARTRAAK
AAAAAATASIGGNPASGNGGGSALTGARCQPDKRIHQVGWVDDVGRGLQG
KRGGGGGVEQRQAVGFNGWMSSRRQDWGLDDVGLPAAQSRGVGSAAPSAS
RLSRSKTAPSPSKSGGGAASPPQPPPPPAPAARAKPTAERLTGPSLGGKS
GGARASAAVGFAGGRGAKRGADGGSSGGGDGGSGCGCNGGTRPRSIGVGP
RSHAKKKSRGNKEGVGEDAGAVAAIPAVPAAAVGSADSTRADKTLTSSPS
PRQRKKTSGSVRCREVSHEGGRGIPAKKCCRQQRARSSAAAVAVSPVTSA
ARQHHRSHGPRGEKMLRQASVQAAGTAAAAPTPTTENVRDSPAAAAAATA
AGRIGPFFGLSLVLVGLPDDVHREVDRTIVACGGRVLEDLPPPKTRGGLA
LRRPAAGAEVVVAAADASRRGRKRDIVTAAASAEGKEDVVVVVSVPSASR
LPRYVLAIATGTPLLHHLWVSDSAAEARPLPASPYLLPGAREASRRRQAA
SSAGTAAAGMTTAAAKAGGGHKASHVALAKAVSKTGTPLMGMAIGVAHPS
PTTCERWAQVLRAAGAQTVLRVTGDPLLVLLAPREETAVGTRTSSPSRGT
WSCSRGRRTAGASSSSSSSLQAEQLAGLDCVLCDFPGAWNGSGGGDDGEC
RAATGRRPVRGNGGVPAIAGTTTKKAKSLPPPLSSLGLLFEAAKLEGVPV
VALSWAMDCVIRGTRVRQQARPEYLTPFLDASAAAIRPSSRSQSLAGGTG
TRLLVAVSRNGTRYEVSDHVYFSAAGRGRGGGGCTGGGGSGGPNGGDERR
QQQAAVGRIVHLERAGGSGGRVFATIEPLQIPDNKGYCGRDPDVYVQQQR
VPTARGPPNLRTGK*

spliced messenger RNA

>Ec-00_000140.1 ID=Ec-00_000140.1|Name=Ec-00_000140.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2745bp|location=Sequence derived from alignment at chr_00:204820..207894+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGTAGGAGGTAGCGGCGATGGCGGAGGCGCCGTGGTCCCGGAAGC
CCGGGATTGTACCCGTGACCGCTGCCAAGAGCCGACCGCCGATCAGCTGA
ACGACCCGGTCTTTCGCGGAAGGATGAAGGCGAGAACGAGGGCCGCGAAA
GCAGCAGCCGCCGCAGCAACGGCAAGCATCGGCGGCAACCCTGCCAGTGG
GAATGGCGGTGGTTCCGCACTAACAGGCGCAAGGTGTCAACCCGACAAGA
GAATCCATCAGGTCGGATGGGTGGACGACGTCGGTCGAGGGCTGCAGGGG
AAACGCGGCGGTGGCGGCGGCGTCGAACAGCGCCAAGCAGTGGGGTTCAA
CGGGTGGATGTCGTCTCGACGGCAGGATTGGGGCCTGGATGACGTCGGCC
TCCCGGCCGCACAGTCCCGCGGCGTCGGTTCCGCCGCACCTTCGGCATCG
CGTCTTTCGCGCTCCAAAACTGCGCCTTCGCCTTCCAAGTCGGGAGGAGG
AGCAGCATCGCCACCGCAGCCGCCGCCGCCACCCGCCCCTGCTGCTAGAG
CGAAACCGACTGCGGAACGTTTGACTGGTCCTTCGCTAGGCGGCAAGAGC
GGCGGAGCGAGAGCGTCAGCGGCGGTCGGGTTCGCCGGCGGCAGGGGCGC
AAAGAGGGGGGCTGACGGTGGCAGTAGCGGCGGCGGCGATGGTGGCAGCG
GTTGCGGGTGTAACGGCGGCACTAGGCCGCGGAGTATTGGCGTGGGCCCG
CGGTCACACGCGAAAAAGAAGAGTCGAGGTAACAAGGAGGGCGTAGGAGA
GGATGCCGGGGCTGTGGCAGCGATACCGGCTGTGCCGGCTGCCGCGGTGG
GTTCAGCGGACTCGACACGGGCTGACAAAACTTTGACGTCGTCGCCGTCT
CCCAGGCAGCGGAAGAAGACCAGCGGGTCGGTTCGGTGCCGTGAGGTATC
GCACGAAGGAGGACGCGGAATACCTGCAAAGAAGTGCTGCCGTCAGCAGC
GCGCTAGAAGCTCAGCAGCGGCGGTGGCGGTGTCACCCGTCACGTCTGCG
GCACGCCAGCACCACCGGAGCCACGGTCCTAGAGGAGAGAAGATGCTCCG
ACAAGCAAGCGTCCAGGCGGCAGGCACCGCCGCCGCCGCTCCCACTCCCA
CCACAGAGAATGTTCGAGATTCTCCCGCCGCGGCCGCTGCCGCCACCGCT
GCCGGCAGGATTGGGCCCTTTTTCGGGCTCAGCTTGGTGCTGGTGGGGCT
CCCCGACGATGTCCACCGGGAGGTCGACCGCACGATTGTCGCCTGCGGCG
GCCGAGTCTTGGAGGACTTGCCGCCGCCGAAAACACGGGGGGGGCTTGCG
TTGCGACGGCCCGCCGCCGGTGCAGAGGTTGTCGTGGCCGCGGCCGATGC
CTCTCGCCGGGGACGGAAGAGGGACATAGTCACCGCGGCAGCGTCGGCGG
AGGGAAAGGAAGATGTCGTGGTTGTCGTGTCCGTGCCGTCGGCGTCTCGA
TTGCCGAGGTACGTGCTTGCCATCGCGACGGGGACCCCGCTGCTCCACCA
CCTCTGGGTCAGCGACAGCGCGGCGGAAGCGCGGCCCCTCCCGGCCTCGC
CGTACCTCTTGCCGGGGGCGCGGGAGGCTTCCAGGAGGCGGCAAGCCGCT
TCTTCGGCCGGCACCGCCGCTGCAGGCATGACGACGGCGGCGGCAAAGGC
CGGCGGCGGCCACAAGGCGTCGCACGTTGCCCTGGCGAAAGCGGTCTCCA
AGACGGGGACCCCGCTGATGGGGATGGCTATCGGAGTCGCCCACCCGTCC
CCGACGACGTGCGAGCGCTGGGCGCAGGTCCTCAGGGCGGCCGGGGCGCA
GACCGTGCTGCGGGTCACCGGTGATCCCCTCCTTGTTCTTCTTGCCCCCC
GGGAGGAGACCGCCGTCGGGACGCGGACTAGTAGTCCGTCGAGGGGCACC
TGGTCCTGCAGCCGAGGGAGGAGGACGGCGGGGGCGTCGTCATCGTCGTC
GTCGTCGCTACAGGCGGAGCAGCTGGCGGGCCTTGACTGCGTGCTGTGCG
ATTTTCCGGGCGCGTGGAACGGTTCAGGCGGCGGCGACGACGGCGAGTGT
CGTGCTGCCACCGGGCGGCGACCGGTGAGGGGCAACGGCGGCGTCCCCGC
GATCGCAGGCACCACCACCAAGAAGGCCAAGTCTTTGCCGCCCCCTTTAT
CTTCGCTTGGGCTCTTGTTTGAGGCCGCTAAGCTTGAGGGGGTGCCCGTG
GTCGCGCTATCCTGGGCGATGGACTGCGTGATCCGGGGCACCCGAGTGAG
GCAGCAGGCGCGCCCGGAGTACCTGACGCCGTTTCTGGATGCCTCGGCGG
CGGCAATTCGGCCGTCCTCGCGCTCGCAGTCGCTCGCGGGGGGTACCGGT
ACCCGCTTGCTTGTGGCCGTGTCGCGGAACGGCACTCGCTATGAGGTCAG
CGATCACGTCTACTTTTCTGCGGCCGGAAGGGGGAGGGGTGGAGGCGGCT
GTACCGGCGGCGGCGGAAGTGGCGGGCCTAACGGCGGGGACGAACGGCGC
CAGCAGCAAGCGGCGGTGGGGCGCATCGTCCACCTGGAGCGAGCCGGGGG
CAGCGGCGGCCGAGTGTTCGCGACCATCGAGCCGCTGCAGATACCCGACA
ACAAGGGGTACTGCGGCCGGGACCCAGACGTGTACGTCCAGCAGCAGCGG
GTGCCCACGGCCCGGGGTCCCCCCAACTTGCGGACGGGAAAGTAG

protein sequence of Ec-00_000140.1

>Ec-00_000140.1 ID=Ec-00_000140.1|Name=Ec-00_000140.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=915bp
MEVGGSGDGGGAVVPEARDCTRDRCQEPTADQLNDPVFRGRMKARTRAAK
AAAAAATASIGGNPASGNGGGSALTGARCQPDKRIHQVGWVDDVGRGLQG
KRGGGGGVEQRQAVGFNGWMSSRRQDWGLDDVGLPAAQSRGVGSAAPSAS
RLSRSKTAPSPSKSGGGAASPPQPPPPPAPAARAKPTAERLTGPSLGGKS
GGARASAAVGFAGGRGAKRGADGGSSGGGDGGSGCGCNGGTRPRSIGVGP
RSHAKKKSRGNKEGVGEDAGAVAAIPAVPAAAVGSADSTRADKTLTSSPS
PRQRKKTSGSVRCREVSHEGGRGIPAKKCCRQQRARSSAAAVAVSPVTSA
ARQHHRSHGPRGEKMLRQASVQAAGTAAAAPTPTTENVRDSPAAAAAATA
AGRIGPFFGLSLVLVGLPDDVHREVDRTIVACGGRVLEDLPPPKTRGGLA
LRRPAAGAEVVVAAADASRRGRKRDIVTAAASAEGKEDVVVVVSVPSASR
LPRYVLAIATGTPLLHHLWVSDSAAEARPLPASPYLLPGAREASRRRQAA
SSAGTAAAGMTTAAAKAGGGHKASHVALAKAVSKTGTPLMGMAIGVAHPS
PTTCERWAQVLRAAGAQTVLRVTGDPLLVLLAPREETAVGTRTSSPSRGT
WSCSRGRRTAGASSSSSSSLQAEQLAGLDCVLCDFPGAWNGSGGGDDGEC
RAATGRRPVRGNGGVPAIAGTTTKKAKSLPPPLSSLGLLFEAAKLEGVPV
VALSWAMDCVIRGTRVRQQARPEYLTPFLDASAAAIRPSSRSQSLAGGTG
TRLLVAVSRNGTRYEVSDHVYFSAAGRGRGGGGCTGGGGSGGPNGGDERR
QQQAAVGRIVHLERAGGSGGRVFATIEPLQIPDNKGYCGRDPDVYVQQQR
VPTARGPPNLRTGK*

mRNA from alignment at chr_00:204820..207894+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ec-00_000140.1 ID=Ec-00_000140.1|Name=Ec-00_000140.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3075bp|location=Sequence derived from alignment at chr_00:204820..207894+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGAGGTAGGAGGTAGCGGCGATGGCGGAGGCGCCGTGGTCCCGGAAGC
CCGGGATTGTACCCGTGACCGCTGCCAAGAGCCGACCGCCGATCAGCTGA
ACGACCCGGTCTTTCGCGGAAGGATGAAGGCGAGAACGAGGGCCGCGAAA
GCAGCAGCCGCCGCAGCAACGGCAAGCATCGGCGGCAACCCTGCCAGTGG
GAATGGCGGTGGTTCCGCACTAACAGGCGCAAGGTGTCAACCCGACAAGA
GAATCCATCAGGTCGGATGGGTGGACGACGTCGGTCGAGGGCTGCAGGGG
AAACGCGGCGGTGGCGGCGGCGTCGAACAGCGCCAAGCAGTGGGGTTCAA
CGGGTGGATGTCGTCTCGACGGCAGGATTGGGGCCTGGATGACGTCGGCC
TCCCGGCCGCACAGTCCCGCGGCGTCGGTTCCGCCGCACCTTCGGCATCG
CGTCTTTCGCGCTCCAAAACTGCGCCTTCGCCTTCCAAGTCGGGAGGAGG
AGCAGCATCGCCACCGCAGCCGCCGCCGCCACCCGCCCCTGCTGCTAGAG
CGAAACCGACTGCGGAACGTTTGACTGGTCCTTCGCTAGGCGGCAAGAGC
GGCGGAGCGAGAGCGTCAGCGGCGGTCGGGTTCGCCGGCGGCAGGGGCGC
AAAGAGGGGGGCTGACGGTGGCAGTAGCGGCGGCGGCGATGGTGGCAGCG
GTTGCGGGTGTAACGGCGGCACTAGGCCGCGGAGTATTGGCGTGGGCCCG
CGGTCACACGCGAAAAAGAAGAGTCGAGGTAACAAGGAGGGCGTAGGAGA
GGATGCCGGGGCTGTGGCAGCGATACCGGCTGTGCCGGCTGCCGCGGTGG
GTTCAGCGGACTCGACACGGGCTGACAAAACTTTGACGTCGTCGCCGTCT
CCCAGGCAGCGGAAGAAGACCAGCGGGTCGGTTCGGTGCCGTGAGGTATC
GCACGAAGGAGGACGCGGAATACCTGCAAAGAAGTGCTGCCGTCAGCAGC
GCGCTAGAAGCTCAGCAGCGGCGGTGGCGGTGTCACCCGTCACGTCTGCG
GCACGCCAGCACCACCGGAGCCACGGTCCTAGAGGAGAGAAGATGCTCCG
ACAAGCAAGCGTCCAGGCGGCAGGCACCGCCGCCGCCGCTCCCACTCCCA
CCACAGAGAATGTTCGAGATTCTCCCGCCGCGGCCGCTGCCGCCACCGCT
GCCGGCAGGATTGGGCCCTTTTTCGGGCTCAGCTTGGTGCTGGTGGGGCT
CCCCGACGATGTCCACCGGGAGGTCGACCGCACGATTGTCGCCTGCGGCG
GCCGAGTCTTGGAGGACTTGCCGCCGCCGAAAACACGGGGGGGGCTTGCG
TTGCGACGGCCCGCCGCCGGTGCAGAGGTTGTCGTGGCCGCGGCCGATGC
CTCTCGCCGGGGACGGAAGAGGGACATAGTCACCGCGGCAGCGTCGGCGG
AGGGAAAGGAAGATGTCGTGGTTGTCGTGTCCGTGCCGTCGGCGTCTCGA
TTGCCGAGGTACGTGCTTGCCATCGCGACGGGGACCCCGCTGCTCCACCA
CCTCTGGGTCAGCGACAGCGCGGCGGAAGCGCGGCCCCTCCCGGCCTCGC
CGTACCTCTTGCCGGGGGCGCGGGAGGCTTCCAGGAGGCGGCAAGCCGCT
TCTTCGGCCGGCACCGCCGCTGCAGGCATGACGACGGCGGCGGCAAAGGC
CGGCGGCGGCCACAAGGCGTCGCACGTTGCCCTGGCGAAAGCGGTCTCCA
AGACGGGGACCCCGCTGATGGGGATGGCTATCGGAGTCGCCCACCCGTCC
CCGACGACGTGCGAGCGCTGGGCGCAGGTCCTCAGGGCGGCCGGGGCGCA
GACCGTGCTGCGGGTCACCGGTGATCCCCTCCTTGTTCTTCTTGCCCCCC
GGGAGGAGACCGCCGTCGGGACGCGGACTAGTAGTCCGTCGAGGGGCACC
TGGTCCTGCAGCCGAGGGAGGAGGACGGCGGGGGCGTCGTCATCGTCGTC
GTCGTCGCTACAGGCGGAGCAGCTGGCGGGCCTTGACTGCGTGCTGTGCG
ATTTTCCGGGCGCGTGGAACGGTTCAGGCGGCGGCGACGACGGCGAGTGT
CGTGCTGCCACCGGGCGGCGACCGGTGAGGGGCAACGGCGGCGTCCCCGC
GATCGCAGGCACCACCACCAAGAAGGCCAAGTCTTTGCCGCCCCCTTTAT
CTTCGCTTGGGCTCTTGTTTGAGGCCGCTAAGCTTGAGGGGGTGCCCGTG
GTCGCGCTATCCTGGGCGATGGACTGCGTGATCCGGGGCACCCGAGTGAG
GCAGCAGGCGCGCCCGGAGTACCTGACGCCGTTTCTGGATGCCTCGGCGG
CGGCAATTCGGCCGTCCTCGCGCTCGCAGTCGCTCGCGGGGGGTACCGGT
ACCCGCTTGCTTGTGGCCGTGTCGCGGAACGGCACTCGCTATGAGGTCAG
CGATCACGTCTACTTTTCTGCGGCCGGAAGGGGGAGGGGTGGAGGCGGCT
GTACCGGCGGCGGCGGAAGTGGCGGGCCTAACGGCGGGGACGAACGGCGC
CAGCAGCAAGCGGCGGTGGGGCGCATCGTCCACCTGGAGCGAGCCGGGGG
CAGCGGCGGCCGAGTGTTCGCGACCATCGAGCCGCTGCAGATACCCGACA
ACAAGCACGCGGTTGTTTCGTCCCTCAGTGACAGCGGTGGCAGGGCCGCC
GGCGGCGGGAGCGGCGCATTGGGCGGAGGCGTTCTGCACGGCGTCGTTCG
CGGGGGTGGTGGTTATTTCGCGAGCCCGTCGGCGGACAGCTCCGTCTCCA
GGGGCAGGGCGAGGCGCGCGAGAGAGCTCAAGAAGGTCGTGCTCGCGGAG
AAGAAGGGAGGCACCGCCGCCGCCGCTGGTACGCGCATCCCCGGCAGGCA
GAACTGGCAGAAGGTGGAGGTTTCCGACGCGTTCCTGCTGGGGAAGATGT
CGGTGCTCTCGGCGCGGGAGTTCGACTCGCGGAGGGGGTACTGCGGCCGG
GACCCAGACGTGTACGTCCAGCAGCAGCGGGTGCCCACGGCCCGGGGTCC
CCCCAACTTGCGGACGGGAAAGTAG

Coding sequence (CDS) from alignment at chr_00:204820..207894+

>Ec-00_000140.1 ID=Ec-00_000140.1|Name=Ec-00_000140.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=2745bp|location=Sequence derived from alignment at chr_00:204820..207894+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGAGGTAGGAGGTAGCGGCGATGGCGGAGGCGCCGTGGTCCCGGAAGC
CCGGGATTGTACCCGTGACCGCTGCCAAGAGCCGACCGCCGATCAGCTGA
ACGACCCGGTCTTTCGCGGAAGGATGAAGGCGAGAACGAGGGCCGCGAAA
GCAGCAGCCGCCGCAGCAACGGCAAGCATCGGCGGCAACCCTGCCAGTGG
GAATGGCGGTGGTTCCGCACTAACAGGCGCAAGGTGTCAACCCGACAAGA
GAATCCATCAGGTCGGATGGGTGGACGACGTCGGTCGAGGGCTGCAGGGG
AAACGCGGCGGTGGCGGCGGCGTCGAACAGCGCCAAGCAGTGGGGTTCAA
CGGGTGGATGTCGTCTCGACGGCAGGATTGGGGCCTGGATGACGTCGGCC
TCCCGGCCGCACAGTCCCGCGGCGTCGGTTCCGCCGCACCTTCGGCATCG
CGTCTTTCGCGCTCCAAAACTGCGCCTTCGCCTTCCAAGTCGGGAGGAGG
AGCAGCATCGCCACCGCAGCCGCCGCCGCCACCCGCCCCTGCTGCTAGAG
CGAAACCGACTGCGGAACGTTTGACTGGTCCTTCGCTAGGCGGCAAGAGC
GGCGGAGCGAGAGCGTCAGCGGCGGTCGGGTTCGCCGGCGGCAGGGGCGC
AAAGAGGGGGGCTGACGGTGGCAGTAGCGGCGGCGGCGATGGTGGCAGCG
GTTGCGGGTGTAACGGCGGCACTAGGCCGCGGAGTATTGGCGTGGGCCCG
CGGTCACACGCGAAAAAGAAGAGTCGAGGTAACAAGGAGGGCGTAGGAGA
GGATGCCGGGGCTGTGGCAGCGATACCGGCTGTGCCGGCTGCCGCGGTGG
GTTCAGCGGACTCGACACGGGCTGACAAAACTTTGACGTCGTCGCCGTCT
CCCAGGCAGCGGAAGAAGACCAGCGGGTCGGTTCGGTGCCGTGAGGTATC
GCACGAAGGAGGACGCGGAATACCTGCAAAGAAGTGCTGCCGTCAGCAGC
GCGCTAGAAGCTCAGCAGCGGCGGTGGCGGTGTCACCCGTCACGTCTGCG
GCACGCCAGCACCACCGGAGCCACGGTCCTAGAGGAGAGAAGATGCTCCG
ACAAGCAAGCGTCCAGGCGGCAGGCACCGCCGCCGCCGCTCCCACTCCCA
CCACAGAGAATGTTCGAGATTCTCCCGCCGCGGCCGCTGCCGCCACCGCT
GCCGGCAGGATTGGGCCCTTTTTCGGGCTCAGCTTGGTGCTGGTGGGGCT
CCCCGACGATGTCCACCGGGAGGTCGACCGCACGATTGTCGCCTGCGGCG
GCCGAGTCTTGGAGGACTTGCCGCCGCCGAAAACACGGGGGGGGCTTGCG
TTGCGACGGCCCGCCGCCGGTGCAGAGGTTGTCGTGGCCGCGGCCGATGC
CTCTCGCCGGGGACGGAAGAGGGACATAGTCACCGCGGCAGCGTCGGCGG
AGGGAAAGGAAGATGTCGTGGTTGTCGTGTCCGTGCCGTCGGCGTCTCGA
TTGCCGAGGTACGTGCTTGCCATCGCGACGGGGACCCCGCTGCTCCACCA
CCTCTGGGTCAGCGACAGCGCGGCGGAAGCGCGGCCCCTCCCGGCCTCGC
CGTACCTCTTGCCGGGGGCGCGGGAGGCTTCCAGGAGGCGGCAAGCCGCT
TCTTCGGCCGGCACCGCCGCTGCAGGCATGACGACGGCGGCGGCAAAGGC
CGGCGGCGGCCACAAGGCGTCGCACGTTGCCCTGGCGAAAGCGGTCTCCA
AGACGGGGACCCCGCTGATGGGGATGGCTATCGGAGTCGCCCACCCGTCC
CCGACGACGTGCGAGCGCTGGGCGCAGGTCCTCAGGGCGGCCGGGGCGCA
GACCGTGCTGCGGGTCACCGGTGATCCCCTCCTTGTTCTTCTTGCCCCCC
GGGAGGAGACCGCCGTCGGGACGCGGACTAGTAGTCCGTCGAGGGGCACC
TGGTCCTGCAGCCGAGGGAGGAGGACGGCGGGGGCGTCGTCATCGTCGTC
GTCGTCGCTACAGGCGGAGCAGCTGGCGGGCCTTGACTGCGTGCTGTGCG
ATTTTCCGGGCGCGTGGAACGGTTCAGGCGGCGGCGACGACGGCGAGTGT
CGTGCTGCCACCGGGCGGCGACCGGTGAGGGGCAACGGCGGCGTCCCCGC
GATCGCAGGCACCACCACCAAGAAGGCCAAGTCTTTGCCGCCCCCTTTAT
CTTCGCTTGGGCTCTTGTTTGAGGCCGCTAAGCTTGAGGGGGTGCCCGTG
GTCGCGCTATCCTGGGCGATGGACTGCGTGATCCGGGGCACCCGAGTGAG
GCAGCAGGCGCGCCCGGAGTACCTGACGCCGTTTCTGGATGCCTCGGCGG
CGGCAATTCGGCCGTCCTCGCGCTCGCAGTCGCTCGCGGGGGGTACCGGT
ACCCGCTTGCTTGTGGCCGTGTCGCGGAACGGCACTCGCTATGAGGTCAG
CGATCACGTCTACTTTTCTGCGGCCGGAAGGGGGAGGGGTGGAGGCGGCT
GTACCGGCGGCGGCGGAAGTGGCGGGCCTAACGGCGGGGACGAACGGCGC
CAGCAGCAAGCGGCGGTGGGGCGCATCGTCCACCTGGAGCGAGCCGGGGG
CAGCGGCGGCCGAGTGTTCGCGACCATCGAGCCGCTGCAGATACCCGACA
ACAAGGGGTACTGCGGCCGGGACCCAGACGTGTACGTCCAGCAGCAGCGG
GTGCCCACGGCCCGGGGTCCCCCCAACTTGCGGACGGGAAAGTAG

Synonyms

The feature 'Ec-00_000140.1' has the following synonyms


Synonym
Esi1030_0001
Esi_1030_0001