Ec-00_000120.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_000120.1
Unique NameEc-00_000120.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length119
Homology
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BLAST of Ec-00_000120.1 vs. uniprot
Match: A0A6H5KRY1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRY1_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 2.720e-38
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 1 
Query:  121 QDGHLWIPVSVNKFDNLETDPLVKMCQVNYDSYSEAPWLLPMGGLLSISSGCADLKRDTVQIVHMSTLK 327
            +DGHLWIPVSVNKFDNLETDPLVKMCQVNYDSYS APWLLPMGGLLSI+SGCADLKRDTVQIVHMSTLK
Sbjct:  193 KDGHLWIPVSVNKFDNLETDPLVKMCQVNYDSYSAAPWLLPMGGLLSIASGCADLKRDTVQIVHMSTLK 261
The following BLAST results are available for this feature:
BLAST of Ec-00_000120.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KRY1_9PHAE2.720e-3895.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:160712..162013 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length357
Hectar predicted targeting categoryother localisation
Gene idEc-00_000120.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000120Ec-00_000120Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 160712..162013 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000120.1.2Ec-00_000120.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 160712..160867 -
Ec-00_000120.1.1Ec-00_000120.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 161813..162013 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000120.1CDS:Ec-00_000120.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 160712..160867 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000120.1Ec-00_000120.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 160712..162013 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_000120.1 ID=Ec-00_000120.1|Name=Ec-00_000120.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=119bp
MHTIHVPNERVSCLSLNRAVAVCVHALPYWRTLIHSFFPRQDGHLWIPVS
VNKFDNLETDPLVKMCQVNYDSYSEAPWLLPMGGLLSISSGCADLKRDTV
QIVHMSTLKVTCLLCLPA*
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spliced messenger RNA

>Ec-00_000120.1 ID=Ec-00_000120.1|Name=Ec-00_000120.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=357bp|location=Sequence derived from alignment at chr_00:160712..162013- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATACCATACACGTGCCAAACGAACGTGTTTCATGTCTCAGCCTTAA
CCGCGCTGTTGCTGTCTGTGTTCATGCTCTGCCGTATTGGCGCACGTTGA
TCCATTCATTCTTTCCCCGCCAGGATGGGCACCTCTGGATACCCGTGTCG
GTCAACAAATTCGACAACCTCGAAACCGACCCGCTCGTTAAGATGTGCCA
GGTTAACTACGATTCCTACTCGGAGGCCCCGTGGTTGCTGCCGATGGGGG
GCCTGCTGTCGATATCCTCGGGCTGCGCGGACCTGAAGAGAGACACGGTA
CAGATCGTGCACATGTCTACTCTCAAGGTGACTTGCTTGTTATGCTTACC
GGCGTGA
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protein sequence of Ec-00_000120.1

>Ec-00_000120.1 ID=Ec-00_000120.1|Name=Ec-00_000120.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=119bp
MHTIHVPNERVSCLSLNRAVAVCVHALPYWRTLIHSFFPRQDGHLWIPVS
VNKFDNLETDPLVKMCQVNYDSYSEAPWLLPMGGLLSISSGCADLKRDTV
QIVHMSTLKVTCLLCLPA*
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mRNA from alignment at chr_00:160712..162013-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_000120.1 ID=Ec-00_000120.1|Name=Ec-00_000120.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1302bp|location=Sequence derived from alignment at chr_00:160712..162013- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCATACCATACACGTGCCAAACGAACGTGTTTCATGTCTCAGCCTTAA
CCGCGCTGTTGCTGTCTGTGTTCATGCTCTGCCGTATTGGCGCACGTTGA
TCCATTCATTCTTTCCCCGCCAGGATGGGCACCTCTGGATACCCGTGTCG
GTCAACAAATTCGACAACCTCGAAACCGACCCGCTCGTTAAGATGTGCCA
GGTGGGTGCCCGCGTGTTTTTTTTTATTTTTTTATACGGACAACATATAC
CGTACCCCTCCAACATGCGTGGTGTCATATATGTCACACTTGCCTGACGG
AACGCCACTACTCAAGAAGCCTACGGTTTCGTTCCATGCTACCGCAGTAC
GATACATGAAGCAGAGTCGCCTCGGTGACAGTAGTCCCAACAACTCCGGC
GCTATTTGGCTGTCGTGTTTTTTTTTGTTTTTTTTTCCCGAAGAAATTCG
ATTTTGTTTGCCTGCGGCGTCCGATGGCTGGTGTCCGTTCCATTGTTTTT
GGTGCCCGTACGCCACTCCGGACATGTCAAAGAGCTAGAGTGAACCGAGA
GCCGATCAAAGTACTTCTAGATATTAAGGTGTCAAAAGGTAACGTTGCTG
TTGACCTGTTAGCTGCGTCGCCGTCAAGACGCCCACCAAACCCAGCGGGC
TGTCAGAGGAAGAGCCAAAGCTAGGCCCCGATGTAGACGAATCGTGCGTG
ATGCCAGTCGATGGATGTATTTTACGGTATACCTTTTTGATGTTAGTTCC
ACCGTGGTTATTTCTTTGCGTGTGAGCCGGCCTCCCTGTTTTGTTTTTTT
TTTGTAACGGGAACCACGACCGTAACTGGCGTTTTTGGCTTCAGTGTCTT
CCCGCACCGAAAACGCTACTGGTACAGTGGGGAGCCCTCTATAGTGCCGG
GGCGTGTCTCGAGATTTTATCGGCCACCGGCACCGTTCAGAGTATAGAAC
AGAACGACTTGGTGTTACGTGTGTGCGAGTCGGAAACGCTATACCGGCCA
CCGGCAGTCGAGAGGGCCCCCCACTGTACCTTACGTCTAAATAGGTAAAC
CACCCCGGGACACACCGTTTGCAGCATCATTGCACATCTTCAAGAAGGAC
CGGGGAGGCTAGCCTTACGCTTTCGCCGTCTCTCTCTTGTCGTCAGGTTA
ACTACGATTCCTACTCGGAGGCCCCGTGGTTGCTGCCGATGGGGGGCCTG
CTGTCGATATCCTCGGGCTGCGCGGACCTGAAGAGAGACACGGTACAGAT
CGTGCACATGTCTACTCTCAAGGTGACTTGCTTGTTATGCTTACCGGCGT
GA
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Coding sequence (CDS) from alignment at chr_00:160712..162013-

>Ec-00_000120.1 ID=Ec-00_000120.1|Name=Ec-00_000120.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=357bp|location=Sequence derived from alignment at chr_00:160712..162013- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCATACCATACACGTGCCAAACGAACGTGTTTCATGTCTCAGCCTTAA
CCGCGCTGTTGCTGTCTGTGTTCATGCTCTGCCGTATTGGCGCACGTTGA
TCCATTCATTCTTTCCCCGCCAGGATGGGCACCTCTGGATACCCGTGTCG
GTCAACAAATTCGACAACCTCGAAACCGACCCGCTCGTTAAGATGTGCCA
GGTTAACTACGATTCCTACTCGGAGGCCCCGTGGTTGCTGCCGATGGGGG
GCCTGCTGTCGATATCCTCGGGCTGCGCGGACCTGAAGAGAGACACGGTA
CAGATCGTGCACATGTCTACTCTCAAGGTGACTTGCTTGTTATGCTTACC
GGCGTGA
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Synonyms
The feature 'Ec-00_000120.1' has the following synonyms
Synonym
Esi026_0007
Esi_026_0007