Ec-00_000090.5 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_000090.5
Unique NameEc-00_000090.5
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length283
Homology
[Close]
BLAST of Ec-00_000090.5 vs. uniprot
Match: D7G6L1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6L1_ECTSI)

HSP 1 Score: 540 bits (1390), Expect = 5.890e-182
Identity = 363/523 (69.41%), Postives = 376/523 (71.89%), Query Frame = 2 
Query:  119 RQRTQVLASTRAKTAAATATPWVPLMYGVRDVFGDSDDDIDDNRPIHQVGDTDXXXXXXXXXXXCSRDDSDDSVACVDPPTLSDKQRKGGRPTRKGQRSTSPRAGAAGCPVDLAREQRGEEGATRKKASKGASGDPLDVDSGVSEQPAPRGKKKASVKTRKAGXXXXXXXXXXXXXXXXMSEPVSEFESESESDTTRTLRSARRKVTPEQRKNLTEMSKSTCPDRIKERDAAFAAHNESLRRGRGRLSWPRKALR--GYAAEEEEGGGEER--------------NGCGPEAPPGTKKPAATLGQSAAKSKKILNKVLGEMCCIRLDIDPPSVLPFSRPNHALGRELKSRSTSPTRSACSCRFHQYSLPCRS*LLVFVLQAAPGTNKPAERAAPAAANLDPSKNDQLVR--VLCRRARRTSLDARKRRRVMTRLPRKSPNGFGKILREKTPRQTERGRVRGLRGSYADESVDELEDARAEPHGDLESDDSQGAGDGSADEGEDPPLDHFGPASLPRYPGRNPL 1633
            +QRTQVLASTRAKTAAATATPWVPLMYGVRDVFGDSDDDIDDNRPIHQVGDTDXXXXXXXXXXXCSRDDSDDSVACVDPPTLSDKQRKGGRPTRKGQRSTSPRAGAAGCPVDLAREQRGEEGATRKKASKGASGDPLDVDSGVSEQPAPRGKKKASVKTRKAGXXXXXXXXXXXXXXXXMSEPVSEFESESESDTTRTLRSARRKVTPEQRKNLTEMSKSTCPDRIKERDAAFAAHNESLRRGRGRLSWPRKALR  G A        + R              N    +APPGTKKPAATLGQSAAKSKKILNK                                                                          RAAPAAANLDPSKNDQ  +  V    + ++  + +K R   T    +     GK   +K   +           + ADESVDELEDARAEPHGDLESDDSQGAGDGSADEGEDPPLDHFGPASLPRYPGRNPL
Sbjct:   23 KQRTQVLASTRAKTAAATATPWVPLMYGVRDVFGDSDDDIDDNRPIHQVGDTDXXXXXXXXXXXCSRDDSDDSVACVDPPTLSDKQRKGGRPTRKGQRSTSPRAGAAGCPVDLAREQRGEEGATRKKASKGASGDPLDVDSGVSEQPAPRGKKKASVKTRKAGXXXXXXXXXXXXXXXXMSEPVSEFESESESDTTRTLRSARRKVTPEQRKNLTEMSKSTCPDRIKERDAAFAAHNESLRRGRGRLSWPRKALRKKGEAKSATVAAQKARTTKETPAPTAARRNNDKNVKAPPGTKKPAATLGQSAAKSKKILNKXXXXXXXXXX----------------------------------------------------------------RAAPAAANLDPSKNDQASKGPVSASPSNKSGREEKKTRDDTTSTANRR-TASGKSYVKKLLAKQNAVESGDSEEADADESVDELEDARAEPHGDLESDDSQGAGDGSADEGEDPPLDHFGPASLPRYPGRNPL 480
[Close]
BLAST of Ec-00_000090.5 vs. uniprot
Match: D7G601_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G601_ECTSI)

HSP 1 Score: 417 bits (1072), Expect = 1.290e-136
Identity = 252/254 (99.21%), Postives = 254/254 (100.00%), Query Frame = 2 
Query:  122 QRTQVLASTRAKTAAATATPWVPLMYGVRDVFGDSDDDIDDNRPIHQVGDTDXXXXXXXXXXXCSRDDSDDSVACVDPPTLSDKQRKGGRPTRKGQRSTSPRAGAAGCPVDLAREQRGEEGATRKKASKGASGDPLDVDSGVSEQPAPRGKKKASVKTRKAGXXXXXXXXXXXXXXXXMSEPVSEFESESESDTTRTLRSARRKVTPEQRKNLTEMSKSTCPDRIKERDAAFAAHNESLRRGRGRLSWPRKALR 883
            +RTQVLASTRAKTAAATATPWVPLMYGVRDVFGDSDDDIDDNRPIHQVGDTDXXXXXXXXXXXCSRDDSDDSVACVDPPTLSDKQRKGGRPTRKGQRSTSPRAGAAGCPVDLAREQRGEEGATRKKASKGASGDPLDVDSGVSEQPAPRGKKKASVKTRKAGXXXXXXXXXXXXXXXX+SEPVSEFESESESDTTRTLRSARRKVTPEQRKNLTEMSKSTCPDRIKERDAAFAAHNESLRRGRGRLSWPRKALR
Sbjct:   65 ERTQVLASTRAKTAAATATPWVPLMYGVRDVFGDSDDDIDDNRPIHQVGDTDXXXXXXXXXXXCSRDDSDDSVACVDPPTLSDKQRKGGRPTRKGQRSTSPRAGAAGCPVDLAREQRGEEGATRKKASKGASGDPLDVDSGVSEQPAPRGKKKASVKTRKAGXXXXXXXXXXXXXXXXVSEPVSEFESESESDTTRTLRSARRKVTPEQRKNLTEMSKSTCPDRIKERDAAFAAHNESLRRGRGRLSWPRKALR 318
[Close]
BLAST of Ec-00_000090.5 vs. uniprot
Match: A0A6H5JUG3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUG3_9PHAE)

HSP 1 Score: 348 bits (892), Expect = 2.830e-107
Identity = 261/586 (44.54%), Postives = 290/586 (49.49%), Query Frame = 2 
Query:  179 PWVPLMYGVRDVFGDSDDDIDDNRPIHQVGDTDXXXXXXXXXXXCSRDDSDDSVACVDPPTLSDKQRKGGRPTRKGQRSTSPRAGAAGCPVDLAREQRGEEGATRKKASKGASGDPLDVDSGVSEQPAPRGKKKASVKTRKAGXXXXXXXXXXXXXXXXMSEPVSEFESESESDTTRTLRSARRKVTPEQRKNLTEMSKSTCPDRIKERDAAFAAHNESLRRGRGRLSWPRKALRGYAA-EEEEGGGEERNGCGPEAPPGTKKPAATLGQSAAKSKKILNKVLGEMCCIRLDIDPPSVLPFSRPNHALGRELKSRSTSPTRSACSCRFHQYSLPCRS*LLVFVLQAAPGTNKPAERAAPAAANLDPSKNDQLVRVLCRRARRTSLDARKRRRVMTRLPRKSPNGFGKILREKTPRQTERGRVRGLRGSYADESVDELEDARAEPHGDLESDDSQGAGDGSADEGEDPPLDHFGPASLPRYPGRNP----L*RWLLQL------------AAVD---------------------------------VCHDDTCCSETKLLKDAFKTHPIEAHHTQEPMVSAKPKSA 1786
            PWVP + GVRDV  DSDD I+DNRPIH+VGDTD           CSRDDSDDSVAC+ PPTL DK RKGGRPTRKGQR TSPRAGAAG PVDL  EQRGEEGATRKKASKGASGDPLDVDSG SEQPAP+GK+KASVKTRKA                         E    SDTT +LRSARRKVTPEQ K LTE+SKSTCPDRIKER+AAFAA +E  R+   +    ++ + G    + ++   +       +APPGTKK AATL  SAAKSK  LN                                                                                  NLD  KNDQ  R+                         S   F K L  K     + G   G      DESVD+LEDARAEPHGDLES DSQGAGDG ADE ED PLDHF        P +      +  W   L            AA+                                  +CHDDTCC ETKLLKDA KTHPIEA  T+EP+ SAKPKSA
Sbjct:   19 PWVPPIDGVRDVLDDSDDGINDNRPIHRVGDTDDEGDDEDGANGCSRDDSDDSVACMHPPTLPDKPRKGGRPTRKGQRPTSPRAGAAGSPVDLVTEQRGEEGATRKKASKGASGDPLDVDSGGSEQPAPKGKQKASVKTRKA-------------------------EXXXXSDTTHSLRSARRKVTPEQGKKLTEVSKSTCPDRIKERNAAFAAADEVSRKRVRQAVLAQEGVEGAKLLKRKKAKAKSAAVAARKAPPGTKKAAATLDPSAAKSKTSLNXXXXXXXXXXXXXXXXXX----------------------------------------------------------------NLDSCKNDQANRLTA-----------------------SEKSFLKKLLAK-----QNGVESGDLEEDDDESVDDLEDARAEPHGDLESYDSQGAGDGKADEDEDSPLDHFRDCLAAALPWKKASLKVMREWRAALYRLRNTRIEGVNAAITTIQNDSKDGDGNTRGEPHADSQQVAPSACGRGCLCHDDTCCPETKLLKDAVKTHPIEADDTEEPVASAKPKSA 487
[Close]
BLAST of Ec-00_000090.5 vs. uniprot
Match: A0A6H5JEG3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEG3_9PHAE)

HSP 1 Score: 282 bits (721), Expect = 2.100e-84
Identity = 218/413 (52.78%), Postives = 231/413 (55.93%), Query Frame = 2 
Query:  134 VLASTRAKTAAATATPWVPLMYGVRDVFGDSDDDIDDNRPIHQVGDTDXXXXXXXXXXXCSRDDSDDSVACVDPPTLSDKQRKGGRPTRKGQRSTSPRAGAAGCPVDLAREQRGEEGATRKKASKGASGDPLDVDSGVSEQPAPRGKKKASVKTRKAGXXXXXXXXXXXXXXXXMSEPVSEFESESESDTTRTLRSARRKVTPEQRKNLTEMSKSTCPDRIKERDAAFAAHNESLRRGR---GRLSWPR----------KALRGYAAEEEEGGGEER--------------NGCGPEAPPGTKKPAATLGQSAAKSKKILNKVLGEMCCIRLDIDPPSVLPFSRPNHALGRELKSRSTSPTRSACSCRFHQYSLPCRS*LLVFVLQAAPGTNKPAERAAPAAANLDPSKNDQL 1291
            VLAST  KTAAATATPWVP ++GVRD                      XXXXXXXXXXXCSRDDS+DSVAC DPPTL D QRKGGRPTRKGQRSTSPRAGAAG PVDLAREQRGEEGATRKKAS+GASGDPLDVDS   EQPAP+GKKKASVKTR A                 +SEPVSE       DTT TLRSARRKV PEQRK LTEMSKSTC D+IKERDAAFAAHNE  ++ +   G L  P           K  +G A        + R              N    +AP GTKKPAATL  SAAKSKK LNK L                                                                PGT K AERAAPAAANLDPSKNDQL
Sbjct:    4 VLASTIPKTAAATATPWVPPIHGVRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSRDDSNDSVACADPPTLPDNQRKGGRPTRKGQRSTSPRAGAAGPPVDLAREQRGEEGATRKKASRGASGDPLDVDSVGPEQPAPKGKKKASVKTRNA-------------CGKKVSEPVSEXXXXXXXDTTHTLRSARRKVPPEQRKKLTEMSKSTCSDQIKERDAAFAAHNEVSKKRKSNIGVLELPARVDAKEAKLLKRKKGEAKSAAVAARKARTTKETPALTAALRYNDKNVKAPFGTKKPAATLDPSAAKSKKRLNKAL----------------------------------------------------------------PGTKKSAERAAPAAANLDPSKNDQL 339
[Close]
BLAST of Ec-00_000090.5 vs. uniprot
Match: D7FHM3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHM3_ECTSI)

HSP 1 Score: 281 bits (718), Expect = 3.560e-82
Identity = 238/519 (45.86%), Postives = 276/519 (53.18%), Query Frame = 2 
Query:  362 LSDKQRKGGRPTRKGQRSTSPRAGAAGCPVDLAREQRGEEGATRKKASKGASGDPLDVDSGVSEQPAPRGKKKASVKTRKAGXXXXXXXXXXXXXXXXMSEPVSEFESESESDTTRTLRSARRKVTPEQRKNLTEMSKSTCPDRIKERDAAFAAHNESLRRGRGRLSWPRKALRGYAAEEEEGGGEERNGCGPEAPPGTKKPAATLGQSAAKSKKILNKVLGEMCCIRLDIDPPSVLPFSRPNHALGRELKSRSTSPTRSACSCRFHQYSLPCRS*LLVFVLQAAPGTNKPAERAAPAAANLDPSKNDQLVRVLCRRARRTSLDARKRRRVMTRLPRKSPNGFGKILREKTPRQTERGRVRGLRGSYADESVDELEDARAEPHGDLESDDSQGAGDGSADEGEDPPLDHFGPA----SLPRYPG------------------------RNPL*---RWLLQLAAVDVCHDDTCCSETKLLKDAFKTHPIEAHHTQEPMVSAKPKSAKRRGGKTKRKRSK 1825
            + D+ RKGGRPTRK QRST P AGA G  VDL  EQRGE+G  RKKASKGASGDPLDVDSG SEQ AP+G+KKASVKTR+AGXXXXXXXXXXXXXXXX    VSE  SESESDTT T+RSARRK+TPEQRK LTE+SKSTCPDR+KER+AA AA +E  R+                                                  +  K+L +  GE                     A    + +R  +P  +A     H+             ++A P   +PA RAAPAAA+LDP KNDQ  R+                         S + F K L  K     + G   G      DESVD L+DAR+EP  DLE+DDSQGAGDG ADE     +  +  A     L R  G                         NP+    RWLLQLAAVDVCHDDTCC ETKLLKDA KTHPI+A  T+ P+ S KP SAK +GGKTK KRSK
Sbjct:   75 IDDQMRKGGRPTRKRQRSTPPGAGAVGSTVDLGTEQRGEKGPMRKKASKGASGDPLDVDSGASEQSAPKGRKKASVKTREAGXXXXXXXXXXXXXXXXK---VSE--SESESDTTHTIRSARRKMTPEQRKQLTEISKSTCPDRMKERNAALAAADEVSRK--------------------------------------------------REAKLLKRKKGE---------------------AKSAAVAARKGTPAPTAA---LHKNDNN---------VKAGPSNKQPAGRAAPAAASLDPCKNDQANRLTA-----------------------SESSFLKKLLAK-----QHGTESGDSEEDDDESVDHLQDARSEPQDDLENDDSQGAGDGEADEASLKVMREWRAALHRLRLTRIEGVNASITTIQNDSKDKDGNVVKALVGNPMPTAKRWLLQLAAVDVCHDDTCCPETKLLKDAVKTHPIKAEDTETPVASGKPTSAKAKGGKTKPKRSK 477
[Close]
BLAST of Ec-00_000090.5 vs. uniprot
Match: D7FUP6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUP6_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 8.800e-27
Identity = 102/256 (39.84%), Postives = 123/256 (48.05%), Query Frame = 2 
Query: 1208 QAAPGTNKPAERAAPAAANLDPSKND-------------------------QLVRVLCRRARRTSLDARKRRRVMTRLPRKSPNGFGKILRE---------------------KTPRQTERGRV-RGLRGSYADESVDELEDARAEPHGDLESDDSQGAGDGSADEGEDPPLDHFGPASLPRYPGRNPL*---RWLLQLAAVDVCHDDTCCSETKLLKDAFKTHPIEAHHTQEPMVSAKPKSAKRRGGKTKRKRSK 1825
            +A PGT KPA    P AA    S N                          +LVR+LCRRARRTSLDARKRRRVMTRLPR    G  K++                       K P   +  +V R  R +     +  +E   A     +++D     G                  ++ +    NP+    RWL QLAAVDVCHD TCC ETKLLKDA KTHPIEA  T+ P+ SAKP +AKR+GGKTKRKRSK
Sbjct:   48 KAPPGTKKPAATLDPPAAKSKKSLNXXXXXXXXXXXXXXXAASTWTHARTIRLVRILCRRARRTSLDARKRRRVMTRLPR---TGSRKMMXXXXXXXXXXXXXXXXXXXXXXXKAPAMAKLTKVMREWRAALHRLRLTRIEGVNAAITT-IQNDSKDRDG------------------NVVKALVGNPMPTAKRWLFQLAAVDVCHDGTCCPETKLLKDAVKTHPIEADDTETPVASAKPTNAKRKGGKTKRKRSK 281
[Close]
BLAST of Ec-00_000090.5 vs. uniprot
Match: D7FL21_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL21_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 4.080e-17
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 3 
Query:  198 MESATSLVIRTTTLTTTDPSIKLGTRMMTATARMGRTAAAATTLTIASHA 347
            MESATSLVIRTTTLTTTDPSIKLGTRMMTATARMGRTAAAATTLTIASHA
Sbjct:    1 MESATSLVIRTTTLTTTDPSIKLGTRMMTATARMGRTAAAATTLTIASHA 50
[Close]
BLAST of Ec-00_000090.5 vs. uniprot
Match: A0A6H5JAW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAW4_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 9.880e-16
Identity = 38/49 (77.55%), Postives = 41/49 (83.67%), Query Frame = 2 
Query: 1637 RWLLQLAAVDVCHDDTCCSETKLLKDAFKTHPIEAHHTQEPMVSAKPKS 1783
            RWL Q AAVDVCHDDTCC E KLLKDA KTHPIEA  T+EP+ SA+PKS
Sbjct:   68 RWLRQRAAVDVCHDDTCCPEAKLLKDAVKTHPIEADDTEEPVASAEPKS 116
[Close]
BLAST of Ec-00_000090.5 vs. uniprot
Match: A0A6H5JHM4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHM4_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 4.450e-14
Identity = 46/72 (63.89%), Postives = 53/72 (73.61%), Query Frame = 2 
Query: 1595 PASLPRYPGRNPL*RWLLQLAAVDVCHDDTCCSETKLLKDAFKTHPIEAHHTQEPMVSAKPKSAKRRGGKTK 1810
            PA LP +P R     WLL LAAV+VCHDDT   ETKLLKDA   HPI A  T++P+ SAKPKSA+R+GGKTK
Sbjct:  115 PAFLPCHPRR-----WLLLLAAVNVCHDDTWYPETKLLKDAVNMHPIVADDTEKPVASAKPKSAERKGGKTK 181
The following BLAST results are available for this feature:
BLAST of Ec-00_000090.5 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7G6L1_ECTSI5.890e-18269.41Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7G601_ECTSI1.290e-13699.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUG3_9PHAE2.830e-10744.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEG3_9PHAE2.100e-8452.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHM3_ECTSI3.560e-8245.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FUP6_ECTSI8.800e-2739.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FL21_ECTSI4.080e-17100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JAW4_9PHAE9.880e-1677.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHM4_9PHAE4.450e-1463.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:127927..133843 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length2492
Hectar predicted targeting categorymitochondrion
Gene idEc-00_000090.5
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000090Ec-00_000090Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 127927..133843 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000090.5Ec-00_000090.5Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 128105..129612 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000090.5.7Ec-00_000090.5.7Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 127927..128775 -
Ec-00_000090.5.6Ec-00_000090.5.6Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 129159..129285 -
Ec-00_000090.5.5Ec-00_000090.5.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 129562..129703 -
Ec-00_000090.5.4Ec-00_000090.5.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 130335..130418 -
Ec-00_000090.5.3Ec-00_000090.5.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 131504..131848 -
Ec-00_000090.5.2Ec-00_000090.5.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 132596..132658 -
Ec-00_000090.5.1Ec-00_000090.5.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 132962..133843 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0000903UTR:Ec-00_000090.5Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 127927..128104 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000090.5CDS:Ec-00_000090.5Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 128105..128775 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0000905UTR:Ec-00_000090.5Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 129613..129703 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_000090.5 ID=Ec-00_000090.5|Name=Ec-00_000090.5|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=283bp
MLTSPLTSSRTRAPSHMVTSKATTHRAPATARLTKVKTPPWTTSGLRRCR
ATLEEILFEGGSFSLRQWMSATTTPAVPRRSSSRMPSRRTPSRRTTRRNP
WLAPSPRALSGGVARPNVNAPSDCALTPPSLVPPANSCILAGGLSRAWAG
YYPWNSSYHYVVLAGGVMGLNPGDSDFLWRKASFSLALSPWCGTPYTAGN
TIREENKTFSPPAISPLTRFASFHECPYQLPWKSTSLPPLPSNVPKRSLH
FHQWHFTLHYCTNDPLAITSMEVHFTSMTFTQ*
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spliced messenger RNA

>Ec-00_000090.5 ID=Ec-00_000090.5|Name=Ec-00_000090.5|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2492bp|location=Sequence derived from alignment at chr_00:127927..133843- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
TATCATGCCCGAATGAACATTACCTTTTCGTGTGCTGCCTCTGGTCTGTA
CAACGTACTCATCCACAACACATGCACGTTGTGACCCCCGACACCTCGTC
TGCCCTCATAATTCCTAACGCCAGCGCACTCAGGTGCTTGCCAGTACCAG
AGCTAAGACCGCTGCCGCCACGGCGACACCCTGGGTCCCCCTTATGTATG
GAGTCCGCGACGTCTTTGGTGATTCGGACGACGACATTGACGACAACCGA
CCCATCCATCAAGTTGGGGACACGGATGATGACGGCGACGGCGAGGATGG
GGCGAACGGCTGCAGCCGCGACGACTCTGACGATAGCGTCGCATGCGTAG
ATCCGCCTACCCTTTCTGACAAACAGAGGAAGGGAGGCCGCCCGACCCGC
AAGGGACAACGGTCGACGTCTCCGCGGGCCGGCGCGGCCGGTTGTCCCGT
CGACCTGGCGAGAGAGCAGCGGGGCGAGGAGGGGGCCACGCGGAAGAAAG
CGTCCAAGGGCGCGTCGGGGGATCCCCTGGATGTAGATTCGGGAGTGTCG
GAGCAGCCGGCGCCTAGGGGCAAGAAGAAGGCATCCGTCAAGACTAGGAA
GGCCGGTGGGAAGAAGAAGGCACCCGCCAATACTAAGAAGACCGCCGGGA
AGAAGATGTCCGAGCCCGTGTCCGAGTTCGAGTCAGAGTCAGAGTCCGAC
ACCACCCGTACGCTGCGGTCGGCCCGGAGGAAGGTGACTCCTGAGCAGAG
GAAGAACCTTACCGAAATGTCGAAGTCGACATGCCCTGACCGGATCAAGG
AGCGCGACGCCGCCTTCGCTGCCCACAACGAGTCTCTAAGAAGAGGGCGA
GGCAGGCTGTCCTGGCCCAGGAAGGCGTTGAGGAGGCTACGCTGCTGAAG
AGGAAGAAGGGGGAGGCGAAGAGCGCAACGGTTGCGGCCCAGAAGGCGCC
CCCCGGCACGAAGAAGCCAGCCGCAACACTCGGCCAATCTGCGGCGAAGA
GCAAGAAAATTTTGAACAAGGTATTGGGGGAGATGTGTTGTATTCGCCTT
GACATTGATCCCCCTTCGGTGCTTCCGTTCTCGCGTCCGAATCATGCTCT
AGGTCGAGAGCTGAAAAGCCGCAGCACGTCCCCAACACGAAGTGCATGTT
CATGCCGTTTTCATCAGTATAGTTTACCTTGCCGCTCGTAGTTGCTCGTC
TTCGTCTTGCAGGCGGCCCCCGGCACGAATAAGCCAGCCGAGAGGGCTGC
CCCCGCCGCGGCGAACCTGGACCCAAGCAAGAATGATCAGGCTAGTAAGG
GTCCTGTGTCGGCGAGCCCGTCGAACAAGTCTGGACGCGAGGAAAAGAAG
ACGCGTGATGACACGACTTCCACGGCAAATCGCCGAACGGCTTCGGGAAA
ATCTTACGTGAAAAAACTCCTCGCCAAACAGAACGCGGTCGAGTCAGGGG
ACTCAGAGGAAGCTGATGCTGACGAGTCCGTTGACGAGCTCGAGGACGCG
CGCGCCGAGCCACATGGTGACCTCGAAAGCGACGACTCACAGGGCGCCGG
CGACGGCTCGGCTGACGAAGGTGAAGACCCCCCCCTGGACCACTTCGGGC
CTGCGTCGCTGCCGCGCTACCCTGGAAGAAATCCTCTTTGAAGGTGGCTC
CTTCAGCTTGCGGCAGTGGATGTCTGCCACGACGACACCTGCTGTTCCGA
GACGAAGCTCCTCAAGGATGCCTTCAAGACGCACCCCATCGAGGCGCACC
ACACGCAGGAACCCATGGTTAGCGCCAAGCCCAAGAGCGCTAAGCGGAGG
GGTGGCAAGACCAAACGTAAACGCTCCAAGTGATTGCGCGTTGACACCGC
CCAGCCTCGTACCCCCAGCCAATTCGTGCATTTTAGCGGGGGGGTTATCC
CGGGCTTGGGCGGGGTATTATCCCTGGAATAGTTCGTATCATTACGTCGT
TCTAGCGGGCGGTGTTATGGGGTTGAACCCTGGCGACAGTGACTTTTTAT
GGCGAAAAGCAAGTTTTTCTCTCGCGTTAAGTCCTTGGTGTGGAACTCCG
TACACCGCTGGAAATACTATTCGAGAGGAAAACAAGACATTTTCACCCCC
CGCCATCAGTCCATTGACACGTTTTGCCAGCTTCCATGAATGTCCTTACC
AGCTTCCATGGAAGTCCACTTCACTTCCACCACTTCCGTCGAATGTCCCC
AAGCGCTCCCTTCACTTCCACCAGTGGCATTTCACCCTACACTATTGCAC
AAATGATCCTCTCGCAATAACCTCCATGGAAGTCCACTTCACTTCCATGA
CTTTCACACAATGAACCCAAGCGCTCACTTCACTTCCACAAATGGTCTTT
CACCCTACACTATTGGACAAATGATCTTCTTGACAATTTCCATCGAAGTC
ATCTCCACTCCCATGACTTCCATCGACTAAACTATAGCGCTCCCTTCAAT
TCCATCAATAGCGTCTCACCCTACACTATTGGACGAATGATC
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protein sequence of Ec-00_000090.5

>Ec-00_000090.5 ID=Ec-00_000090.5|Name=Ec-00_000090.5|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=283bp
MLTSPLTSSRTRAPSHMVTSKATTHRAPATARLTKVKTPPWTTSGLRRCR
ATLEEILFEGGSFSLRQWMSATTTPAVPRRSSSRMPSRRTPSRRTTRRNP
WLAPSPRALSGGVARPNVNAPSDCALTPPSLVPPANSCILAGGLSRAWAG
YYPWNSSYHYVVLAGGVMGLNPGDSDFLWRKASFSLALSPWCGTPYTAGN
TIREENKTFSPPAISPLTRFASFHECPYQLPWKSTSLPPLPSNVPKRSLH
FHQWHFTLHYCTNDPLAITSMEVHFTSMTFTQ*
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mRNA from alignment at chr_00:127927..133843-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_000090.5 ID=Ec-00_000090.5|Name=Ec-00_000090.5|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=5917bp|location=Sequence derived from alignment at chr_00:127927..133843- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
TATCATGCCCGAATGAACATTACCTTTTCGTGTGCTGCCTCTGGTCTGTA
CAACGTACTCATCCACAACACATGCACGTTGTGACCCCCGACACCTCGTC
TGCCCTCATAATTCCTAACGCCAGCGCACTCAGGTGCTTGCCAGTACCAG
AGCTAAGACCGCTGCCGCCACGGCGACACCCTGGGTCCCCCTTATGTATG
GAGTCCGCGACGTCTTTGGTGATTCGGACGACGACATTGACGACAACCGA
CCCATCCATCAAGTTGGGGACACGGATGATGACGGCGACGGCGAGGATGG
GGCGAACGGCTGCAGCCGCGACGACTCTGACGATAGCGTCGCATGCGTAG
ATCCGCCTACCCTTTCTGACAAACAGAGGAAGGGAGGCCGCCCGACCCGC
AAGGGACAACGGTCGACGTCTCCGCGGGCCGGCGCGGCCGGTTGTCCCGT
CGACCTGGCGAGAGAGCAGCGGGGCGAGGAGGGGGCCACGCGGAAGAAAG
CGTCCAAGGGCGCGTCGGGGGATCCCCTGGATGTAGATTCGGGAGTGTCG
GAGCAGCCGGCGCCTAGGGGCAAGAAGAAGGCATCCGTCAAGACTAGGAA
GGCCGGTGGGAAGAAGAAGGCACCCGCCAATACTAAGAAGACCGCCGGGA
AGAAGATGTCCGAGCCCGTGTCCGAGTTCGAGTCAGAGTCAGAGTCCGAC
ACCACCCGTACGCTGCGGTCGGCCCGGAGGAAGGTGACTCCTGAGCAGAG
GAAGAACCTTACCGAAATGTCGAAGTCGACATGCCCTGACCGGATCAAGG
AGCGCGACGCCGCCTTCGCTGCCCACAACGAGTCTCTAAGAAGAGGGCGA
GGCAGGCTGTCCTGGCCCAGGAAGGCGTTGAGGTAAGCAGTACAACGTTG
TGGTGTGGTAGTATCGTGTGTTCCGCCGATGACACCCAACTACCGACGAT
GTATCTGTCCGCGTAGTGCCGGCATGTGTGGAGTTCTACCCGTATTATAT
GGCCTCGGGTGGATCAGACGTAAATCACACTCCGGTTAAGTAGAACGCTA
TGCCACGTAGTTGAACATAGGCCGCCTCTGTAGAGTCAAATCTCTGTGGC
TACTGATTCGCCGCATGCGAGGGTAACGTTCCAATAGAAATCTAACATCG
GTGTACTCGAATTGCCCGCCCGCGTTGACGCGAAGGAGGCTACGCTGCTG
AAGAGGAAGAAGGGGGAGGCGAAGAGCGCAACGGTTGCGGCCCAGAAGGC
GAGTCTATGGTGGTAATAGTACGCTCTGTCGGGTCATGCCGCCATAGCAT
TTCCCCTAACCCTAGCTGAACGCCACGAGTCCAACCTACATTTTGGGAAC
GTATTGTGAATGGGAAAACGCGCTGGACACTCTTACTGAACGTCATTTGG
GTAGCGCCAAGAGGGCTGGCTATTCTTGCGTGAGTTGGCAGGCACCCTAG
ACTACCTTACCTGAGAAAGGTGGTGCCACAAATCAAGCTGTAGGCCGCTG
GTCGCCGGCGCCCTCTGCTCGTCTTGCGCAATGTCAATTCCAGGAGGGCG
GCGCCCCCTGCGTGCCCCCCTCCAAAAGCCCGGGAGCCGCCGAATGTAGG
GAAACCCACGTTAGACCATCGTGCACGTACACTCACCTTGCCTTCGCTGC
TTTGATTATTTCACGGCGCCGACAATCCAAACGATACTTTACGTGATAGA
CTGTTATTGTTCCTTGATACTCGTCATGGTATCGGTATTAGGCCCGCACA
ACGAAGGAGACGCCTGCCCCAACTGCGGCCCGTCGCAACAACGACAAGAA
CGTTAAGGTAATGGTTGTGAGTTGTTGTTTTCGCCTTGCTCCTTCCTTAA
CGCTTCAATGGGCGCGTCCGAGTGATGCTGCCGGCCGAGAAGTAAATGAC
CGAAGCACAAACCCAAGGACAAGAAACTGTCAATATGTTTCCTATCTGTA
TCCTCGACATTGCCTCGCGCATCGTTACTGGTCTTCGTTTTGCAGGCGCC
CCCCGGCACGAAGAAGCCAGCCGCAACACTCGGCCAATCTGCGGCGAAGA
GCAAGAAAATTTTGAACAAGGTATTGGGGGAGATGTGTTGTATTCGCCTT
GACATTGATCCCCCTTCGGTGCTTCCGTTCTCGCGTCCGAATCATGCTCT
AGGTCGAGAGCTGAAAAGCCGCAGCACGTCCCCAACACGAAGTGCATGTT
CATGCCGTTTTCATCAGTATAGTTTACCTTGCCGCTCGTAGTTGCTCGTC
TTCGTCTTGCAGGCGGCCCCCGGCACGAATAAGCCAGCCGAGAGGGCTGC
CCCCGCCGCGGCGAACCTGGACCCAAGCAAGAATGATCAGGTAACTCCCC
GAGATTATCGTGTTAGAGTCGTTGCTCCGGTTTAAGAGGGTTGCGTGACC
AAGGTCCTCCGGACCCCCCTGTCATATCGGTTGTAAGAGGGTGCCGTCAT
ATGTTGGGGCAATCTGTAGTAGGTAACCTCTTACACAGTGGAGATCGGGA
ATAACGACAGACACGGTATACTTGACTGCAGCCCAGCAATCCATATGCAA
CGTACTAGATCTATGTAAGGACGTGTGGTGGACTGTAAAGCGTGGGGTGA
GCCGCTTGCCCGGTACGGCATGCCCAGAGCAGCTCAGGTGTAGTGGTCGC
CACGGTGACGCCTTCCATTTCATGTTCTGTTCATGTTATGGGGTGTAAAC
GCAGATGAAAATTGCCTCGAAGGCAAGCTGACATGGCGATTGATGCTAGG
AGGCGAAGTACATTCATGTGGTCCATGCTTTTAGAACACATGCCGAGTAG
TATAACACGATAAAAAGACCCGACCACCTCTCCGGCCAGGAGCTATCTAA
CGGTTGTATTGCCCACCACGAACAGTGTACTTCGGCCTGCCGCAAACCAT
ACGTCGCCTGCGACTTCTACTGATGCAGTGCGATAGTGTTGAAAGCACAC
GCATTACCTGCATTTGTCAATACTCCCCGCGTCTGCCTGCAGATTCTCTT
GGTGTGGTTTCCATTATACCCTCCCTGATAGGATCGACACCGCTGATCAC
AGAGAATGCGACGGTACACGTGACTTGCACATACACGTGTTTGTTTACGA
GTTATTTCATATCCTTGCATCCTCCCCGCACTTACCACCATTTCCAACAA
AATTCCACTACTTTTAGGCACCTCCGTCTATATTGTAGTCTCTTCCTGAG
TGCGCCTACTTTATCGGGTCAAGTCCGCGACAACCAATTTCAACCATCCA
TGTCGGAGCCTCCTCGTCAGAGGTATCATCTTCTTACGGAGCCACGACTG
CCATAGGCTGATTTAACGCAATCCGCTTTGAAACCGTGCCCGAATTACGT
CAACACGCGTGTCGTTCACGCCATAAGACACGCACAAGTTCACATCAATA
TGTCAATTGATTTTACTTTCGGCAGGCTAGTAAGGGTCCTGTGTCGGCGA
GCCCGTCGAACAAGTCTGGACGCGAGGAAAAGAAGACGCGTGATGACACG
ACTTCCACGGTGAGATGATCCCATCTCCTGTTTCTCACCGCACGCATGAG
CCTTTTCGGTGGCCCCGTCGACGTGAATATCAGGGGATGAGACGGTGTGT
GACAATACACTTGATGTAACGCTGTTGTCCATAGCAGAGATTGTGGGGTG
AACATGTTCGGCACCTTTGCCGGCTAACGGTCTTCAATAGATGAAGTTGG
CGTATTCCGCGCACTTCGTCGTGTGGAATGAAGACAGATGGCGGTATAAG
GATGAGGTTACCCTAGGCAACAGAGCGAATAGTATTAAGAGGATATTGCG
ACGAAAACACCCAACCCACAAGCGTTCGTTTCATACACCTCTGACCTTTC
ACGTGACTTGGTCCTTGAAAGCGCAATATGTCCGTACGACAAGGACGTCG
TCTGATGTTCCTTCCTAACGATATTCCACCCCGCCTCTATTGCTGACATA
CTTCAACAATATGGTCGGCTCCCGCGTGACCGGTGCAAAACTGGGTATCA
AACGAAATCGACTTTCGCACGGACACAGGAAGACCTGCGAGGCCTTGCAC
AGATTTCAGACACTACCTCCATCTCCGAGGACATAGTATCGGCGACGTGC
TCACCAACCTTGCCGCCCCGTTCTCCGCCCGGGTTTGCAGGCAAATCGCC
GAACGGCTTCGGGAAAATCTTACGTGAAAAAACTCCTCGCCAAACAGAAC
GCGGTCGAGTCAGGGGACTCAGAGGAAGCTGATGCTGACGAGTCCGTTGA
CGAGCTCGAGGACGCGCGCGCCGAGCCACATGGTAAGAACGACGTTGTCC
TCGTCGTGAAGGGCTCAATCGCTAACTCGATCCAAACTTTTCGTATCCCC
ATCTCACCGTAGGCGTAGGCCGCAGATGAACGACCGAACCACGGAGCGGG
CTCATGTAAGATCATCTCGGGGTGTGTATATGGAGAGCGTATCCGTCGGG
CACCCACCATTAATCATGCAAACCTGCTTTTTCCGTACCGATCTTCTCAT
GGTGACCTAATATTACTGCATACTTCATGCTACCGCGGACGTCATCGTTG
CCTTGCAGGTGACCTCGAAAGCGACGACTCACAGGGCGCCGGCGACGGCT
CGGCTGACGAAGGTGAAGACCCCCCCCTGGACCACTTCGGGCCTGCGTCG
CTGCCGCGCTACCCTGGAAGAAATCCTCTTTGAAGGTGATGCGGGAGTGG
CGCGCGGCACTGTATCATCTACGAAACACCCGAGTCGACGGCATTAACGC
AGCGATTGCCACCATCCAGAGCGATTCGAAGGACGCGGGAGGCCAGTGTC
GTGGGGAACCCCGTGCCGACAGCCAAGAGGTACACGGGAGGCTCATAAAT
TGATGGGCTTTCATGGTTTTGTGTACAGACTCCTGCACTAAGGTTGAACT
TACGGAAGCAACGACAGACGTCTCCACGTCCTTGCCCACGACTCCCCGAG
TTACGGCCCCCGTTTCGTTCCTGTGCGCTTGGACATGTACGGCTGGCTGG
TTGATAAACCTCGACGTGCTACCCGTGCTACCTTGTCCTGCTTCCTTACC
ATATCGTGATCCTCGCAGGTGGCTCCTTCAGCTTGCGGCAGTGGATGTCT
GCCACGACGACACCTGCTGTTCCGAGACGAAGCTCCTCAAGGATGCCTTC
AAGACGCACCCCATCGAGGCGCACCACACGCAGGAACCCATGGTTAGCGC
CAAGCCCAAGAGCGCTAAGCGGAGGGGTGGCAAGACCAAACGTAAACGCT
CCAAGTGATTGCGCGTTGACACCGCCCAGCCTCGTACCCCCAGCCAATTC
GTGCATTTTAGCGGGGGGGTTATCCCGGGCTTGGGCGGGGTATTATCCCT
GGAATAGTTCGTATCATTACGTCGTTCTAGCGGGCGGTGTTATGGGGTTG
AACCCTGGCGACAGTGACTTTTTATGGCGAAAAGCAAGTTTTTCTCTCGC
GTTAAGTCCTTGGTGTGGAACTCCGTACACCGCTGGAAATACTATTCGAG
AGGAAAACAAGACATTTTCACCCCCCGCCATCAGTCCATTGACACGTTTT
GCCAGCTTCCATGAATGTCCTTACCAGCTTCCATGGAAGTCCACTTCACT
TCCACCACTTCCGTCGAATGTCCCCAAGCGCTCCCTTCACTTCCACCAGT
GGCATTTCACCCTACACTATTGCACAAATGATCCTCTCGCAATAACCTCC
ATGGAAGTCCACTTCACTTCCATGACTTTCACACAATGAACCCAAGCGCT
CACTTCACTTCCACAAATGGTCTTTCACCCTACACTATTGGACAAATGAT
CTTCTTGACAATTTCCATCGAAGTCATCTCCACTCCCATGACTTCCATCG
ACTAAACTATAGCGCTCCCTTCAATTCCATCAATAGCGTCTCACCCTACA
CTATTGGACGAATGATC
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Coding sequence (CDS) from alignment at chr_00:127927..133843-

>Ec-00_000090.5 ID=Ec-00_000090.5|Name=Ec-00_000090.5|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=849bp|location=Sequence derived from alignment at chr_00:127927..133843- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCTGACGAGTCCGTTGACGAGCTCGAGGACGCGCGCGCCGAGCCACAT
GGTGACCTCGAAAGCGACGACTCACAGGGCGCCGGCGACGGCTCGGCTGA
CGAAGGTGAAGACCCCCCCCTGGACCACTTCGGGCCTGCGTCGCTGCCGC
GCTACCCTGGAAGAAATCCTCTTTGAAGGTGGCTCCTTCAGCTTGCGGCA
GTGGATGTCTGCCACGACGACACCTGCTGTTCCGAGACGAAGCTCCTCAA
GGATGCCTTCAAGACGCACCCCATCGAGGCGCACCACACGCAGGAACCCA
TGGTTAGCGCCAAGCCCAAGAGCGCTAAGCGGAGGGGTGGCAAGACCAAA
CGTAAACGCTCCAAGTGATTGCGCGTTGACACCGCCCAGCCTCGTACCCC
CAGCCAATTCGTGCATTTTAGCGGGGGGGTTATCCCGGGCTTGGGCGGGG
TATTATCCCTGGAATAGTTCGTATCATTACGTCGTTCTAGCGGGCGGTGT
TATGGGGTTGAACCCTGGCGACAGTGACTTTTTATGGCGAAAAGCAAGTT
TTTCTCTCGCGTTAAGTCCTTGGTGTGGAACTCCGTACACCGCTGGAAAT
ACTATTCGAGAGGAAAACAAGACATTTTCACCCCCCGCCATCAGTCCATT
GACACGTTTTGCCAGCTTCCATGAATGTCCTTACCAGCTTCCATGGAAGT
CCACTTCACTTCCACCACTTCCGTCGAATGTCCCCAAGCGCTCCCTTCAC
TTCCACCAGTGGCATTTCACCCTACACTATTGCACAAATGATCCTCTCGC
AATAACCTCCATGGAAGTCCACTTCACTTCCATGACTTTCACACAATGA
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Synonyms
The feature 'Ec-00_000090.5' has the following synonyms
Synonym
Esi1020_0002
Esi_1020_0002