Ec-00_000090.4 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_000090.4
Unique NameEc-00_000090.4
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length235
Homology
[Close]
BLAST of Ec-00_000090.4 vs. uniprot
Match: D7G601_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G601_ECTSI)

HSP 1 Score: 382 bits (982), Expect = 1.170e-122
Identity = 234/236 (99.15%), Postives = 235/236 (99.58%), Query Frame = 1 
Query:  187 PPMYGVRDVFGDSDDDIDDNRPIHQVGDTDXXXXXXXXXXXCSRDDSDDSVACVDPPTLSDKQRKGGRPTRKGQRSTSPRAGAAGCPVDLAREQRGEEGATRKKASKGASGDPLDVDSGVSEQPAPRGKKKASVKTRKAGXXXXXXXXXXXXXXXXMSEPVSEFESESESDTTRTLRSARRKVTPEQRKNLTEMSKSTCPDRIKERDAAFAAHNESLRRGRGRLSWPRKALRRLRC 894
            P MYGVRDVFGDSDDDIDDNRPIHQVGDTDXXXXXXXXXXXCSRDDSDDSVACVDPPTLSDKQRKGGRPTRKGQRSTSPRAGAAGCPVDLAREQRGEEGATRKKASKGASGDPLDVDSGVSEQPAPRGKKKASVKTRKAGXXXXXXXXXXXXXXXX+SEPVSEFESESESDTTRTLRSARRKVTPEQRKNLTEMSKSTCPDRIKERDAAFAAHNESLRRGRGRLSWPRKALRRLRC
Sbjct:   87 PLMYGVRDVFGDSDDDIDDNRPIHQVGDTDXXXXXXXXXXXCSRDDSDDSVACVDPPTLSDKQRKGGRPTRKGQRSTSPRAGAAGCPVDLAREQRGEEGATRKKASKGASGDPLDVDSGVSEQPAPRGKKKASVKTRKAGXXXXXXXXXXXXXXXXVSEPVSEFESESESDTTRTLRSARRKVTPEQRKNLTEMSKSTCPDRIKERDAAFAAHNESLRRGRGRLSWPRKALRRLRC 322
[Close]
BLAST of Ec-00_000090.4 vs. uniprot
Match: D7G6L1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6L1_ECTSI)

HSP 1 Score: 385 bits (990), Expect = 1.480e-121
Identity = 274/397 (69.02%), Postives = 291/397 (73.30%), Query Frame = 1 
Query:  187 PPMYGVRDVFGDSDDDIDDNRPIHQVGDTDXXXXXXXXXXXCSRDDSDDSVACVDPPTLSDKQRKGGRPTRKGQRSTSPRAGAAGCPVDLAREQRGEEGATRKKASKGASGDPLDVDSGVSEQPAPRGKKKASVKTRKAGXXXXXXXXXXXXXXXXMSEPVSEFESESESDTTRTLRSARRKVTPEQRKNLTEMSKSTCPDRIKERDAAFAAHNESLRRGRGRLSWPRKALRRLRC*RGRRGRRRAQRLRPRSAPRHEEASRNTR--PICGEEQENFEQGIGGDVLYSP*H*SPFGASVLASESCSRSRAEKPQHVPNTKCMFMPFSSV*FTLPLVVARLRLAGGPRHE*ASREGCPRRGEPGPKQE*SASKGPVSASPSNKSGREEKKTRDDTTST 1371
            P MYGVRDVFGDSDDDIDDNRPIHQVGDTDXXXXXXXXXXXCSRDDSDDSVACVDPPTLSDKQRKGGRPTRKGQRSTSPRAGAAGCPVDLAREQRGEEGATRKKASKGASGDPLDVDSGVSEQPAPRGKKKASVKTRKAGXXXXXXXXXXXXXXXXMSEPVSEFESESESDTTRTLRSARRKVTPEQRKNLTEMSKSTCPDRIKERDAAFAAHNESLRRGRGRLSWPRKALR+              +   +SA    + +R T+  P     + N ++ +           +P G    A+ +  +S A K + + N                                      P      P +   ASKGPVSASPSNKSGREEKKTRDDTTST
Sbjct:   46 PLMYGVRDVFGDSDDDIDDNRPIHQVGDTDXXXXXXXXXXXCSRDDSDDSVACVDPPTLSDKQRKGGRPTRKGQRSTSPRAGAAGCPVDLAREQRGEEGATRKKASKGASGDPLDVDSGVSEQPAPRGKKKASVKTRKAGXXXXXXXXXXXXXXXXMSEPVSEFESESESDTTRTLRSARRKVTPEQRKNLTEMSKSTCPDRIKERDAAFAAHNESLRRGRGRLSWPRKALRK--------------KGEAKSATVAAQKARTTKETPAPTAARRNNDKNVK----------APPGTKKPAA-TLGQSAA-KSKKILNKXXXXXXXXXX------------------------RAAPAAANLDPSKNDQASKGPVSASPSNKSGREEKKTRDDTTST 392
[Close]
BLAST of Ec-00_000090.4 vs. uniprot
Match: A0A6H5JUG3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUG3_9PHAE)

HSP 1 Score: 354 bits (908), Expect = 3.830e-109
Identity = 257/589 (43.63%), Postives = 307/589 (52.12%), Query Frame = 1 
Query:  187 PPMYGVRDVFGDSDDDIDDNRPIHQVGDTDXXXXXXXXXXXCSRDDSDDSVACVDPPTLSDKQRKGGRPTRKGQRSTSPRAGAAGCPVDLAREQRGEEGATRKKASKGASGDPLDVDSGVSEQPAPRGKKKASVKTRKAGXXXXXXXXXXXXXXXXMSEPVSEFESESESDTTRTLRSARRKVTPEQRKNLTEMSKSTCPDRIKERDAAFAAHNESLRRGRGRLSWPRKALRRLRC*RGRRGRRRAQRLRPRSAPRH-EEASRNTRPICGEEQENFEQGIGGDVLYSP*H*SPFGASVLASESCSRSRAEKPQHVPNTKCMFMPFSSV*FTLPLVVARLRLAGGPRHE*ASREGCPRRGEPGPKQE*SASKGPVSASPSNKSGREEKKTRDDTTSTQIAERLRENLT*KNSSPN---RTRSSQGT---QRKLMLTSPLTSSRTRAPSHM*PRKRRLTGRRRRLG*RR*RPPPGPLRACVAAALPWKKSSLKVMREWRAALYHLRNTRVDGINAAIATIQSDSKDAGGQCRGEPRADSQEWLLQLAAVD-VCHDDTCCSETKLLKDAFKTHPIEAHHTQEPMVSAKPKSA 1929
            PP+ GVRDV  DSDD I+DNRPIH+VGDTD           CSRDDSDDSVAC+ PPTL DK RKGGRPTRKGQR TSPRAGAAG PVDL  EQRGEEGATRKKASKGASGDPLDVDSG SEQPAP+GK+KASVKTRKA                         E    SDTT +LRSARRKVTPEQ K LTE+SKSTCPDRIKER+AAFAA +E  R+   +    ++ +   +  + ++ + ++  +  R AP   ++A+    P   + + +                          +SC   +A +           +  S   F   L+  +  +  G   E                                          DD  S    E  R       + P+    +  SQG    +      SPL         H                           R C+AAALPWKK+SLKVMREWRAALY LRNTR++G+NAAI TIQ+DSKD  G  RGEP ADSQ+          +CHDDTCC ETKLLKDA KTHPIEA  T+EP+ SAKPKSA
Sbjct:   22 PPIDGVRDVLDDSDDGINDNRPIHRVGDTDDEGDDEDGANGCSRDDSDDSVACMHPPTLPDKPRKGGRPTRKGQRPTSPRAGAAGSPVDLVTEQRGEEGATRKKASKGASGDPLDVDSGGSEQPAPKGKQKASVKTRKA-------------------------EXXXXSDTTHSLRSARRKVTPEQGKKLTEVSKSTCPDRIKERNAAFAAADEVSRKRVRQAVLAQEGVEGAKLLKRKKAKAKSAAVAARKAPPGTKKAAATLDPSAAKSKTSLNXXXXXXXXXXX----XXXXXXXNLDSCKNDQANR-----------LTASEKSFLKKLLAKQNGVESGDLEE------------------------------------------DDDESVDDLEDAR-------AEPHGDLESYDSQGAGDGKADEDEDSPL--------DHF--------------------------RDCLAAALPWKKASLKVMREWRAALYRLRNTRIEGVNAAITTIQNDSKDGDGNTRGEPHADSQQVAPSACGRGCLCHDDTCCPETKLLKDAVKTHPIEADDTEEPVASAKPKSA 487
[Close]
BLAST of Ec-00_000090.4 vs. uniprot
Match: D7FHM3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHM3_ECTSI)

HSP 1 Score: 259 bits (661), Expect = 1.250e-73
Identity = 223/540 (41.30%), Postives = 272/540 (50.37%), Query Frame = 1 
Query:  361 LSDKQRKGGRPTRKGQRSTSPRAGAAGCPVDLAREQRGEEGATRKKASKGASGDPLDVDSGVSEQPAPRGKKKASVKTRKAGXXXXXXXXXXXXXXXXMSEPVSEFESESESDTTRTLRSARRKVTPEQRKNLTEMSKSTCPDRIKERDAAFAAHNESLRRGRGRLSWPRKALRRLRC*RGRRGRRRAQRLRPRSAPRHEEASRNTRPICGEEQENFEQGIGGDVLYSP*H*SPFGASVLASESCSRSRAEKPQHVPNTKCMFMPFSSV*FTLPLVVARLRLAGGPRHE*ASREGCPRRGEPGPKQE*SASKGPVSASPSNKSGREEKKTRDDTTSTQIAERLRENLT*KNSSPNRTRSSQGTQRKLMLTSPLTSSRTRAPSHM*PRKRRLTGRRRRLG*RR*RPPPGPLRACVAAALPWKKSSLKVMREWRAALYHLRNTRVDGINAAIATIQSDSKDAGGQCR----GEPRADSQEWLLQLAAVDVCHDDTCCSETKLLKDAFKTHPIEAHHTQEPMVSAKPKSAKRRGGKTKRKRSK 1968
            + D+ RKGGRPTRK QRST P AGA G  VDL  EQRGE+G  RKKASKGASGDPLDVDSG SEQ AP+G+KKASVKTR+AGXXXXXXXXXXXXXXXX    VSE  SESESDTT T+RSARRK+TPEQRK LTE+SKSTCPDR+KER+AA AA +E  R+   +L   +K   +      R+G                       P     + +       +V   P +  P G +  A+ S    + ++   +  ++  F+          L+  +     G   E                                          DD  S    +  R       S P     +  +Q                                                  A      ++SLKVMREWRAAL+ LR TR++G+NA+I TIQ+DSKD  G       G P   ++ WLLQLAAVDVCHDDTCC ETKLLKDA KTHPI+A  T+ P+ S KP SAK +GGKTK KRSK
Sbjct:   75 IDDQMRKGGRPTRKRQRSTPPGAGAVGSTVDLGTEQRGEKGPMRKKASKGASGDPLDVDSGASEQSAPKGRKKASVKTREAGXXXXXXXXXXXXXXXXK---VSE--SESESDTTHTIRSARRKMTPEQRKQLTEISKSTCPDRMKERNAALAAADEVSRKREAKLLKRKKGEAKSAAVAARKG--------------------TPAPTAALHKND------NNVKAGPSNKQPAGRAAPAAASLDPCKNDQANRLTASESSFLK--------KLLAKQHGTESGDSEE------------------------------------------DDDESVDHLQDAR-------SEPQDDLENDDSQ-------------------------------------------------GAGDGEADEASLKVMREWRAALHRLRLTRIEGVNASITTIQNDSKDKDGNVVKALVGNPMPTAKRWLLQLAAVDVCHDDTCCPETKLLKDAVKTHPIKAEDTETPVASGKPTSAKAKGGKTKPKRSK 477
[Close]
BLAST of Ec-00_000090.4 vs. uniprot
Match: A0A6H5JEG3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEG3_9PHAE)

HSP 1 Score: 230 bits (586), Expect = 1.160e-64
Identity = 150/215 (69.77%), Postives = 157/215 (73.02%), Query Frame = 1 
Query:  187 PPMYGVRDVFGDSDDDIDDNRPIHQVGDTDXXXXXXXXXXXCSRDDSDDSVACVDPPTLSDKQRKGGRPTRKGQRSTSPRAGAAGCPVDLAREQRGEEGATRKKASKGASGDPLDVDSGVSEQPAPRGKKKASVKTRKAGXXXXXXXXXXXXXXXXMSEPVSEFESESESDTTRTLRSARRKVTPEQRKNLTEMSKSTCPDRIKERDAAFAAHNE 831
            PP++GVRD                      XXXXXXXXXXXCSRDDS+DSVAC DPPTL D QRKGGRPTRKGQRSTSPRAGAAG PVDLAREQRGEEGATRKKAS+GASGDPLDVDS   EQPAP+GKKKASVKTR A                 +SEPVSE       DTT TLRSARRKV PEQRK LTEMSKSTC D+IKERDAAFAAHNE
Sbjct:   22 PPIHGVRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSRDDSNDSVACADPPTLPDNQRKGGRPTRKGQRSTSPRAGAAGPPVDLAREQRGEEGATRKKASRGASGDPLDVDSVGPEQPAPKGKKKASVKTRNA-------------CGKKVSEPVSEXXXXXXXDTTHTLRSARRKVPPEQRKKLTEMSKSTCSDQIKERDAAFAAHNE 223
[Close]
BLAST of Ec-00_000090.4 vs. uniprot
Match: D7FUP6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUP6_ECTSI)

HSP 1 Score: 157 bits (396), Expect = 3.780e-39
Identity = 78/115 (67.83%), Postives = 89/115 (77.39%), Query Frame = 1 
Query: 1636 KVMREWRAALYHLRNTRVDGINAAIATIQSDSKDAGGQCR----GEPRADSQEWLLQLAAVDVCHDDTCCSETKLLKDAFKTHPIEAHHTQEPMVSAKPKSAKRRGGKTKRKRSK 1968
            KVMREWRAAL+ LR TR++G+NAAI TIQ+DSKD  G       G P   ++ WL QLAAVDVCHD TCC ETKLLKDA KTHPIEA  T+ P+ SAKP +AKR+GGKTKRKRSK
Sbjct:  167 KVMREWRAALHRLRLTRIEGVNAAITTIQNDSKDRDGNVVKALVGNPMPTAKRWLFQLAAVDVCHDGTCCPETKLLKDAVKTHPIEADDTETPVASAKPTNAKRKGGKTKRKRSK 281
[Close]
BLAST of Ec-00_000090.4 vs. uniprot
Match: A0A6H5JAW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAW4_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 2.710e-37
Identity = 73/118 (61.86%), Postives = 85/118 (72.03%), Query Frame = 1 
Query: 1573 PPPGPLRACVAAALPWKKSSLKVMREWRAALYHLRNTRVDGINAAIATIQSDSKDAGGQCRGEPRADSQEWLLQLAAVDVCHDDTCCSETKLLKDAFKTHPIEAHHTQEPMVSAKPKS 1926
            PP    RAC+AAALPWKK+SLK+MREWRAAL+ LRNTR++G+NAA      D KD+          +   WL Q AAVDVCHDDTCC E KLLKDA KTHPIEA  T+EP+ SA+PKS
Sbjct:   10 PPLDHFRACLAAALPWKKASLKMMREWRAALHRLRNTRIEGVNAA----HDDPKDSED-------GEWLRWLRQRAAVDVCHDDTCCPEAKLLKDAVKTHPIEADDTEEPVASAEPKS 116
[Close]
BLAST of Ec-00_000090.4 vs. uniprot
Match: A0A6H5JHM4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHM4_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.980e-22
Identity = 67/155 (43.23%), Postives = 81/155 (52.26%), Query Frame = 1 
Query: 1591 RACVAAALPWKKSSLKVMREWRAALYHLRNTRVDGINAAIATIQSDSKDAGGQ-----CRGEPRA-----------------------------DSQEWLLQLAAVDVCHDDTCCSETKLLKDAFKTHPIEAHHTQEPMVSAKPKSAKRRGGKTK 1953
            RAC+A ALPWKK+SLK MREWR ALY  RN   DG    +  +  +   A  +         P +                               + WLL LAAV+VCHDDT   ETKLLKDA   HPI A  T++P+ SAKPKSA+R+GGKTK
Sbjct:   29 RACLAGALPWKKASLKAMREWREALY--RNDSKDGDGNVVEALVGNPMPASNRRLHVLAHHSPSSFLCACTCTVGWLINLDVLPVLPWPAFLPCHPRRWLLLLAAVNVCHDDTWYPETKLLKDAVNMHPIVADDTEKPVASAKPKSAERKGGKTK 181
[Close]
BLAST of Ec-00_000090.4 vs. uniprot
Match: D7FL21_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL21_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 8.050e-17
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 2 
Query:  197 MESATSLVIRTTTLTTTDPSIKLGTRMMTATARMGRTAAAATTLTIASHA 346
            MESATSLVIRTTTLTTTDPSIKLGTRMMTATARMGRTAAAATTLTIASHA
Sbjct:    1 MESATSLVIRTTTLTTTDPSIKLGTRMMTATARMGRTAAAATTLTIASHA 50
The following BLAST results are available for this feature:
BLAST of Ec-00_000090.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7G601_ECTSI1.170e-12299.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G6L1_ECTSI1.480e-12169.02Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5JUG3_9PHAE3.830e-10943.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHM3_ECTSI1.250e-7341.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JEG3_9PHAE1.160e-6469.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUP6_ECTSI3.780e-3967.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JAW4_9PHAE2.710e-3761.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHM4_9PHAE1.980e-2243.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FL21_ECTSI8.050e-17100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:127927..133843 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length2636
Hectar predicted targeting categoryother localisation
Gene idEc-00_000090.4
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000090Ec-00_000090Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 127927..133843 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000090.4Ec-00_000090.4Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 132643..133650 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000090.4.7Ec-00_000090.4.7Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 127927..128775 -
Ec-00_000090.4.6Ec-00_000090.4.6Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 129015..129285 -
Ec-00_000090.4.5Ec-00_000090.4.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 129562..129703 -
Ec-00_000090.4.4Ec-00_000090.4.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 130335..130418 -
Ec-00_000090.4.3Ec-00_000090.4.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 131504..131848 -
Ec-00_000090.4.2Ec-00_000090.4.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 132596..132658 -
Ec-00_000090.4.1Ec-00_000090.4.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 132962..133843 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0000903UTR:Ec-00_000090.4Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 127927..128775 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000090.4CDS:Ec-00_000090.4Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 132643..132658 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0000905UTR:Ec-00_000090.4Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 133651..133843 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_000090.4 ID=Ec-00_000090.4|Name=Ec-00_000090.4|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=235bp
MYGVRDVFGDSDDDIDDNRPIHQVGDTDDDGDGEDGANGCSRDDSDDSVA
CVDPPTLSDKQRKGGRPTRKGQRSTSPRAGAAGCPVDLAREQRGEEGATR
KKASKGASGDPLDVDSGVSEQPAPRGKKKASVKTRKAGGKKKAPANTKKT
AGKKMSEPVSEFESESESDTTRTLRSARRKVTPEQRKNLTEMSKSTCPDR
IKERDAAFAAHNESLRRGRGRLSWPRKALRRLRC*
back to top

spliced messenger RNA

>Ec-00_000090.4 ID=Ec-00_000090.4|Name=Ec-00_000090.4|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2636bp|location=Sequence derived from alignment at chr_00:127927..133843- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
TATCATGCCCGAATGAACATTACCTTTTCGTGTGCTGCCTCTGGTCTGTA
CAACGTACTCATCCACAACACATGCACGTTGTGACCCCCGACACCTCGTC
TGCCCTCATAATTCCTAACGCCAGCGCACTCAGGTGCTTGCCAGTACCAG
AGCTAAGACCGCTGCCGCCACGGCGACACCCTGGGTCCCCCTTATGTATG
GAGTCCGCGACGTCTTTGGTGATTCGGACGACGACATTGACGACAACCGA
CCCATCCATCAAGTTGGGGACACGGATGATGACGGCGACGGCGAGGATGG
GGCGAACGGCTGCAGCCGCGACGACTCTGACGATAGCGTCGCATGCGTAG
ATCCGCCTACCCTTTCTGACAAACAGAGGAAGGGAGGCCGCCCGACCCGC
AAGGGACAACGGTCGACGTCTCCGCGGGCCGGCGCGGCCGGTTGTCCCGT
CGACCTGGCGAGAGAGCAGCGGGGCGAGGAGGGGGCCACGCGGAAGAAAG
CGTCCAAGGGCGCGTCGGGGGATCCCCTGGATGTAGATTCGGGAGTGTCG
GAGCAGCCGGCGCCTAGGGGCAAGAAGAAGGCATCCGTCAAGACTAGGAA
GGCCGGTGGGAAGAAGAAGGCACCCGCCAATACTAAGAAGACCGCCGGGA
AGAAGATGTCCGAGCCCGTGTCCGAGTTCGAGTCAGAGTCAGAGTCCGAC
ACCACCCGTACGCTGCGGTCGGCCCGGAGGAAGGTGACTCCTGAGCAGAG
GAAGAACCTTACCGAAATGTCGAAGTCGACATGCCCTGACCGGATCAAGG
AGCGCGACGCCGCCTTCGCTGCCCACAACGAGTCTCTAAGAAGAGGGCGA
GGCAGGCTGTCCTGGCCCAGGAAGGCGTTGAGGAGGCTACGCTGCTGAAG
AGGAAGAAGGGGGAGGCGAAGAGCGCAACGGTTGCGGCCCAGAAGGCGCC
CCCCGGCACGAAGAAGCCAGCCGCAACACTCGGCCAATCTGCGGCGAAGA
GCAAGAAAATTTTGAACAAGGTATTGGGGGAGATGTGTTGTATTCGCCTT
GACATTGATCCCCCTTCGGTGCTTCCGTTCTCGCGTCCGAATCATGCTCT
AGGTCGAGAGCTGAAAAGCCGCAGCACGTCCCCAACACGAAGTGCATGTT
CATGCCGTTTTCATCAGTATAGTTTACCTTGCCGCTCGTAGTTGCTCGTC
TTCGTCTTGCAGGCGGCCCCCGGCACGAATAAGCCAGCCGAGAGGGCTGC
CCCCGCCGCGGCGAACCTGGACCCAAGCAAGAATGATCAGGCTAGTAAGG
GTCCTGTGTCGGCGAGCCCGTCGAACAAGTCTGGACGCGAGGAAAAGAAG
ACGCGTGATGACACGACTTCCACGGCAAATCGCCGAACGGCTTCGGGAAA
ATCTTACGTGAAAAAACTCCTCGCCAAACAGAACGCGGTCGAGTCAGGGG
ACTCAGAGGAAGCTGATGCTGACGAGTCCGTTGACGAGCTCGAGGACGCG
CGCGCCGAGCCACATGGTGACCTCGAAAGCGACGACTCACAGGGCGCCGG
CGACGGCTCGGCTGACGAAGGTGAAGACCCCCCCCTGGACCACTTCGGGC
CTGCGTCGCTGCCGCGCTACCCTGGAAGAAATCCTCTTTGAAGGTGATGC
GGGAGTGGCGCGCGGCACTGTATCATCTACGAAACACCCGAGTCGACGGC
ATTAACGCAGCGATTGCCACCATCCAGAGCGATTCGAAGGACGCGGGAGG
CCAGTGTCGTGGGGAACCCCGTGCCGACAGCCAAGAGGTGGCTCCTTCAG
CTTGCGGCAGTGGATGTCTGCCACGACGACACCTGCTGTTCCGAGACGAA
GCTCCTCAAGGATGCCTTCAAGACGCACCCCATCGAGGCGCACCACACGC
AGGAACCCATGGTTAGCGCCAAGCCCAAGAGCGCTAAGCGGAGGGGTGGC
AAGACCAAACGTAAACGCTCCAAGTGATTGCGCGTTGACACCGCCCAGCC
TCGTACCCCCAGCCAATTCGTGCATTTTAGCGGGGGGGTTATCCCGGGCT
TGGGCGGGGTATTATCCCTGGAATAGTTCGTATCATTACGTCGTTCTAGC
GGGCGGTGTTATGGGGTTGAACCCTGGCGACAGTGACTTTTTATGGCGAA
AAGCAAGTTTTTCTCTCGCGTTAAGTCCTTGGTGTGGAACTCCGTACACC
GCTGGAAATACTATTCGAGAGGAAAACAAGACATTTTCACCCCCCGCCAT
CAGTCCATTGACACGTTTTGCCAGCTTCCATGAATGTCCTTACCAGCTTC
CATGGAAGTCCACTTCACTTCCACCACTTCCGTCGAATGTCCCCAAGCGC
TCCCTTCACTTCCACCAGTGGCATTTCACCCTACACTATTGCACAAATGA
TCCTCTCGCAATAACCTCCATGGAAGTCCACTTCACTTCCATGACTTTCA
CACAATGAACCCAAGCGCTCACTTCACTTCCACAAATGGTCTTTCACCCT
ACACTATTGGACAAATGATCTTCTTGACAATTTCCATCGAAGTCATCTCC
ACTCCCATGACTTCCATCGACTAAACTATAGCGCTCCCTTCAATTCCATC
AATAGCGTCTCACCCTACACTATTGGACGAATGATC
back to top

protein sequence of Ec-00_000090.4

>Ec-00_000090.4 ID=Ec-00_000090.4|Name=Ec-00_000090.4|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=235bp
MYGVRDVFGDSDDDIDDNRPIHQVGDTDDDGDGEDGANGCSRDDSDDSVA
CVDPPTLSDKQRKGGRPTRKGQRSTSPRAGAAGCPVDLAREQRGEEGATR
KKASKGASGDPLDVDSGVSEQPAPRGKKKASVKTRKAGGKKKAPANTKKT
AGKKMSEPVSEFESESESDTTRTLRSARRKVTPEQRKNLTEMSKSTCPDR
IKERDAAFAAHNESLRRGRGRLSWPRKALRRLRC*
back to top

mRNA from alignment at chr_00:127927..133843-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_000090.4 ID=Ec-00_000090.4|Name=Ec-00_000090.4|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=5917bp|location=Sequence derived from alignment at chr_00:127927..133843- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
TATCATGCCCGAATGAACATTACCTTTTCGTGTGCTGCCTCTGGTCTGTA
CAACGTACTCATCCACAACACATGCACGTTGTGACCCCCGACACCTCGTC
TGCCCTCATAATTCCTAACGCCAGCGCACTCAGGTGCTTGCCAGTACCAG
AGCTAAGACCGCTGCCGCCACGGCGACACCCTGGGTCCCCCTTATGTATG
GAGTCCGCGACGTCTTTGGTGATTCGGACGACGACATTGACGACAACCGA
CCCATCCATCAAGTTGGGGACACGGATGATGACGGCGACGGCGAGGATGG
GGCGAACGGCTGCAGCCGCGACGACTCTGACGATAGCGTCGCATGCGTAG
ATCCGCCTACCCTTTCTGACAAACAGAGGAAGGGAGGCCGCCCGACCCGC
AAGGGACAACGGTCGACGTCTCCGCGGGCCGGCGCGGCCGGTTGTCCCGT
CGACCTGGCGAGAGAGCAGCGGGGCGAGGAGGGGGCCACGCGGAAGAAAG
CGTCCAAGGGCGCGTCGGGGGATCCCCTGGATGTAGATTCGGGAGTGTCG
GAGCAGCCGGCGCCTAGGGGCAAGAAGAAGGCATCCGTCAAGACTAGGAA
GGCCGGTGGGAAGAAGAAGGCACCCGCCAATACTAAGAAGACCGCCGGGA
AGAAGATGTCCGAGCCCGTGTCCGAGTTCGAGTCAGAGTCAGAGTCCGAC
ACCACCCGTACGCTGCGGTCGGCCCGGAGGAAGGTGACTCCTGAGCAGAG
GAAGAACCTTACCGAAATGTCGAAGTCGACATGCCCTGACCGGATCAAGG
AGCGCGACGCCGCCTTCGCTGCCCACAACGAGTCTCTAAGAAGAGGGCGA
GGCAGGCTGTCCTGGCCCAGGAAGGCGTTGAGGTAAGCAGTACAACGTTG
TGGTGTGGTAGTATCGTGTGTTCCGCCGATGACACCCAACTACCGACGAT
GTATCTGTCCGCGTAGTGCCGGCATGTGTGGAGTTCTACCCGTATTATAT
GGCCTCGGGTGGATCAGACGTAAATCACACTCCGGTTAAGTAGAACGCTA
TGCCACGTAGTTGAACATAGGCCGCCTCTGTAGAGTCAAATCTCTGTGGC
TACTGATTCGCCGCATGCGAGGGTAACGTTCCAATAGAAATCTAACATCG
GTGTACTCGAATTGCCCGCCCGCGTTGACGCGAAGGAGGCTACGCTGCTG
AAGAGGAAGAAGGGGGAGGCGAAGAGCGCAACGGTTGCGGCCCAGAAGGC
GAGTCTATGGTGGTAATAGTACGCTCTGTCGGGTCATGCCGCCATAGCAT
TTCCCCTAACCCTAGCTGAACGCCACGAGTCCAACCTACATTTTGGGAAC
GTATTGTGAATGGGAAAACGCGCTGGACACTCTTACTGAACGTCATTTGG
GTAGCGCCAAGAGGGCTGGCTATTCTTGCGTGAGTTGGCAGGCACCCTAG
ACTACCTTACCTGAGAAAGGTGGTGCCACAAATCAAGCTGTAGGCCGCTG
GTCGCCGGCGCCCTCTGCTCGTCTTGCGCAATGTCAATTCCAGGAGGGCG
GCGCCCCCTGCGTGCCCCCCTCCAAAAGCCCGGGAGCCGCCGAATGTAGG
GAAACCCACGTTAGACCATCGTGCACGTACACTCACCTTGCCTTCGCTGC
TTTGATTATTTCACGGCGCCGACAATCCAAACGATACTTTACGTGATAGA
CTGTTATTGTTCCTTGATACTCGTCATGGTATCGGTATTAGGCCCGCACA
ACGAAGGAGACGCCTGCCCCAACTGCGGCCCGTCGCAACAACGACAAGAA
CGTTAAGGTAATGGTTGTGAGTTGTTGTTTTCGCCTTGCTCCTTCCTTAA
CGCTTCAATGGGCGCGTCCGAGTGATGCTGCCGGCCGAGAAGTAAATGAC
CGAAGCACAAACCCAAGGACAAGAAACTGTCAATATGTTTCCTATCTGTA
TCCTCGACATTGCCTCGCGCATCGTTACTGGTCTTCGTTTTGCAGGCGCC
CCCCGGCACGAAGAAGCCAGCCGCAACACTCGGCCAATCTGCGGCGAAGA
GCAAGAAAATTTTGAACAAGGTATTGGGGGAGATGTGTTGTATTCGCCTT
GACATTGATCCCCCTTCGGTGCTTCCGTTCTCGCGTCCGAATCATGCTCT
AGGTCGAGAGCTGAAAAGCCGCAGCACGTCCCCAACACGAAGTGCATGTT
CATGCCGTTTTCATCAGTATAGTTTACCTTGCCGCTCGTAGTTGCTCGTC
TTCGTCTTGCAGGCGGCCCCCGGCACGAATAAGCCAGCCGAGAGGGCTGC
CCCCGCCGCGGCGAACCTGGACCCAAGCAAGAATGATCAGGTAACTCCCC
GAGATTATCGTGTTAGAGTCGTTGCTCCGGTTTAAGAGGGTTGCGTGACC
AAGGTCCTCCGGACCCCCCTGTCATATCGGTTGTAAGAGGGTGCCGTCAT
ATGTTGGGGCAATCTGTAGTAGGTAACCTCTTACACAGTGGAGATCGGGA
ATAACGACAGACACGGTATACTTGACTGCAGCCCAGCAATCCATATGCAA
CGTACTAGATCTATGTAAGGACGTGTGGTGGACTGTAAAGCGTGGGGTGA
GCCGCTTGCCCGGTACGGCATGCCCAGAGCAGCTCAGGTGTAGTGGTCGC
CACGGTGACGCCTTCCATTTCATGTTCTGTTCATGTTATGGGGTGTAAAC
GCAGATGAAAATTGCCTCGAAGGCAAGCTGACATGGCGATTGATGCTAGG
AGGCGAAGTACATTCATGTGGTCCATGCTTTTAGAACACATGCCGAGTAG
TATAACACGATAAAAAGACCCGACCACCTCTCCGGCCAGGAGCTATCTAA
CGGTTGTATTGCCCACCACGAACAGTGTACTTCGGCCTGCCGCAAACCAT
ACGTCGCCTGCGACTTCTACTGATGCAGTGCGATAGTGTTGAAAGCACAC
GCATTACCTGCATTTGTCAATACTCCCCGCGTCTGCCTGCAGATTCTCTT
GGTGTGGTTTCCATTATACCCTCCCTGATAGGATCGACACCGCTGATCAC
AGAGAATGCGACGGTACACGTGACTTGCACATACACGTGTTTGTTTACGA
GTTATTTCATATCCTTGCATCCTCCCCGCACTTACCACCATTTCCAACAA
AATTCCACTACTTTTAGGCACCTCCGTCTATATTGTAGTCTCTTCCTGAG
TGCGCCTACTTTATCGGGTCAAGTCCGCGACAACCAATTTCAACCATCCA
TGTCGGAGCCTCCTCGTCAGAGGTATCATCTTCTTACGGAGCCACGACTG
CCATAGGCTGATTTAACGCAATCCGCTTTGAAACCGTGCCCGAATTACGT
CAACACGCGTGTCGTTCACGCCATAAGACACGCACAAGTTCACATCAATA
TGTCAATTGATTTTACTTTCGGCAGGCTAGTAAGGGTCCTGTGTCGGCGA
GCCCGTCGAACAAGTCTGGACGCGAGGAAAAGAAGACGCGTGATGACACG
ACTTCCACGGTGAGATGATCCCATCTCCTGTTTCTCACCGCACGCATGAG
CCTTTTCGGTGGCCCCGTCGACGTGAATATCAGGGGATGAGACGGTGTGT
GACAATACACTTGATGTAACGCTGTTGTCCATAGCAGAGATTGTGGGGTG
AACATGTTCGGCACCTTTGCCGGCTAACGGTCTTCAATAGATGAAGTTGG
CGTATTCCGCGCACTTCGTCGTGTGGAATGAAGACAGATGGCGGTATAAG
GATGAGGTTACCCTAGGCAACAGAGCGAATAGTATTAAGAGGATATTGCG
ACGAAAACACCCAACCCACAAGCGTTCGTTTCATACACCTCTGACCTTTC
ACGTGACTTGGTCCTTGAAAGCGCAATATGTCCGTACGACAAGGACGTCG
TCTGATGTTCCTTCCTAACGATATTCCACCCCGCCTCTATTGCTGACATA
CTTCAACAATATGGTCGGCTCCCGCGTGACCGGTGCAAAACTGGGTATCA
AACGAAATCGACTTTCGCACGGACACAGGAAGACCTGCGAGGCCTTGCAC
AGATTTCAGACACTACCTCCATCTCCGAGGACATAGTATCGGCGACGTGC
TCACCAACCTTGCCGCCCCGTTCTCCGCCCGGGTTTGCAGGCAAATCGCC
GAACGGCTTCGGGAAAATCTTACGTGAAAAAACTCCTCGCCAAACAGAAC
GCGGTCGAGTCAGGGGACTCAGAGGAAGCTGATGCTGACGAGTCCGTTGA
CGAGCTCGAGGACGCGCGCGCCGAGCCACATGGTAAGAACGACGTTGTCC
TCGTCGTGAAGGGCTCAATCGCTAACTCGATCCAAACTTTTCGTATCCCC
ATCTCACCGTAGGCGTAGGCCGCAGATGAACGACCGAACCACGGAGCGGG
CTCATGTAAGATCATCTCGGGGTGTGTATATGGAGAGCGTATCCGTCGGG
CACCCACCATTAATCATGCAAACCTGCTTTTTCCGTACCGATCTTCTCAT
GGTGACCTAATATTACTGCATACTTCATGCTACCGCGGACGTCATCGTTG
CCTTGCAGGTGACCTCGAAAGCGACGACTCACAGGGCGCCGGCGACGGCT
CGGCTGACGAAGGTGAAGACCCCCCCCTGGACCACTTCGGGCCTGCGTCG
CTGCCGCGCTACCCTGGAAGAAATCCTCTTTGAAGGTGATGCGGGAGTGG
CGCGCGGCACTGTATCATCTACGAAACACCCGAGTCGACGGCATTAACGC
AGCGATTGCCACCATCCAGAGCGATTCGAAGGACGCGGGAGGCCAGTGTC
GTGGGGAACCCCGTGCCGACAGCCAAGAGGTACACGGGAGGCTCATAAAT
TGATGGGCTTTCATGGTTTTGTGTACAGACTCCTGCACTAAGGTTGAACT
TACGGAAGCAACGACAGACGTCTCCACGTCCTTGCCCACGACTCCCCGAG
TTACGGCCCCCGTTTCGTTCCTGTGCGCTTGGACATGTACGGCTGGCTGG
TTGATAAACCTCGACGTGCTACCCGTGCTACCTTGTCCTGCTTCCTTACC
ATATCGTGATCCTCGCAGGTGGCTCCTTCAGCTTGCGGCAGTGGATGTCT
GCCACGACGACACCTGCTGTTCCGAGACGAAGCTCCTCAAGGATGCCTTC
AAGACGCACCCCATCGAGGCGCACCACACGCAGGAACCCATGGTTAGCGC
CAAGCCCAAGAGCGCTAAGCGGAGGGGTGGCAAGACCAAACGTAAACGCT
CCAAGTGATTGCGCGTTGACACCGCCCAGCCTCGTACCCCCAGCCAATTC
GTGCATTTTAGCGGGGGGGTTATCCCGGGCTTGGGCGGGGTATTATCCCT
GGAATAGTTCGTATCATTACGTCGTTCTAGCGGGCGGTGTTATGGGGTTG
AACCCTGGCGACAGTGACTTTTTATGGCGAAAAGCAAGTTTTTCTCTCGC
GTTAAGTCCTTGGTGTGGAACTCCGTACACCGCTGGAAATACTATTCGAG
AGGAAAACAAGACATTTTCACCCCCCGCCATCAGTCCATTGACACGTTTT
GCCAGCTTCCATGAATGTCCTTACCAGCTTCCATGGAAGTCCACTTCACT
TCCACCACTTCCGTCGAATGTCCCCAAGCGCTCCCTTCACTTCCACCAGT
GGCATTTCACCCTACACTATTGCACAAATGATCCTCTCGCAATAACCTCC
ATGGAAGTCCACTTCACTTCCATGACTTTCACACAATGAACCCAAGCGCT
CACTTCACTTCCACAAATGGTCTTTCACCCTACACTATTGGACAAATGAT
CTTCTTGACAATTTCCATCGAAGTCATCTCCACTCCCATGACTTCCATCG
ACTAAACTATAGCGCTCCCTTCAATTCCATCAATAGCGTCTCACCCTACA
CTATTGGACGAATGATC
back to top

Coding sequence (CDS) from alignment at chr_00:127927..133843-

>Ec-00_000090.4 ID=Ec-00_000090.4|Name=Ec-00_000090.4|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=705bp|location=Sequence derived from alignment at chr_00:127927..133843- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTATGGAGTCCGCGACGTCTTTGGTGATTCGGACGACGACATTGACGA
CAACCGACCCATCCATCAAGTTGGGGACACGGATGATGACGGCGACGGCG
AGGATGGGGCGAACGGCTGCAGCCGCGACGACTCTGACGATAGCGTCGCA
TGCGTAGATCCGCCTACCCTTTCTGACAAACAGAGGAAGGGAGGCCGCCC
GACCCGCAAGGGACAACGGTCGACGTCTCCGCGGGCCGGCGCGGCCGGTT
GTCCCGTCGACCTGGCGAGAGAGCAGCGGGGCGAGGAGGGGGCCACGCGG
AAGAAAGCGTCCAAGGGCGCGTCGGGGGATCCCCTGGATGTAGATTCGGG
AGTGTCGGAGCAGCCGGCGCCTAGGGGCAAGAAGAAGGCATCCGTCAAGA
CTAGGAAGGCCGGTGGGAAGAAGAAGGCACCCGCCAATACTAAGAAGACC
GCCGGGAAGAAGATGTCCGAGCCCGTGTCCGAGTTCGAGTCAGAGTCAGA
GTCCGACACCACCCGTACGCTGCGGTCGGCCCGGAGGAAGGTGACTCCTG
AGCAGAGGAAGAACCTTACCGAAATGTCGAAGTCGACATGCCCTGACCGG
ATCAAGGAGCGCGACGCCGCCTTCGCTGCCCACAACGAGTCTCTAAGAAG
AGGGCGAGGCAGGCTGTCCTGGCCCAGGAAGGCGTTGAGGAGGCTACGCT
GCTGA
back to top
Synonyms
The feature 'Ec-00_000090.4' has the following synonyms
Synonym
Esi1020_0002
Esi_1020_0002