Ec-00_000090.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_000090.2
Unique NameEc-00_000090.2
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length215
Homology
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BLAST of Ec-00_000090.2 vs. uniprot
Match: A0A6H5JUG3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUG3_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 3.440e-26
Identity = 91/204 (44.61%), Postives = 114/204 (55.88%), Query Frame = 2 
Query:   50 ANRRTASGKSYVKKLLAKQNAVESGDSEEADADESVDELEDARAEPHVTSKATTHRAPATARLTKVKTPP-------------WTTSGL---RRCRATLEEILFEGDAGVARGTVSSTKHPSRRH*RSDCHHPERFEGRGRPVSWGTP-CRQPRVAPSACGSD-VCHDDTCCSETKLLKDAFKTHPIEAHHTQEPMVSAKPKSA 607
            ANR TAS KS++KKLLAKQN VESGD EE D DESVD+LEDARAEPH   ++   +     +  + +  P             W  + L   R  RA L  +      GV    +++ ++ S+             +G G   + G P     +VAPSACG   +CHDDTCC ETKLLKDA KTHPIEA  T+EP+ SAKPKSA
Sbjct:  301 ANRLTASEKSFLKKLLAKQNGVESGDLEEDD-DESVDDLEDARAEPHGDLESYDSQGAGDGKADEDEDSPLDHFRDCLAAALPWKKASLKVMREWRAALYRLRNTRIEGV-NAAITTIQNDSK-------------DGDGN--TRGEPHADSQQVAPSACGRGCLCHDDTCCPETKLLKDAVKTHPIEADDTEEPVASAKPKSA 487
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BLAST of Ec-00_000090.2 vs. uniprot
Match: D7FHM3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHM3_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 5.120e-24
Identity = 84/199 (42.21%), Postives = 108/199 (54.27%), Query Frame = 2 
Query:   50 ANRRTASGKSYVKKLLAKQNAVESGDSEEADADESVDELEDARAEPHVTSKATTHRAPATARLTKVKTPPWTTSGLRRCRATLEEILFEGDAGVARGTVSSTKHPSRRH*RSDCHHPERFEGRGRPVSWGTPCRQPRVAPSACGSDVCHDDTCCSETKLLKDAFKTHPIEAHHTQEPMVSAKPKSAKRRGGKTKRKRSK 646
            ANR TAS  S++KKLLAKQ+  ESGDSEE D DESVD L+DAR+EP    +    +        +          +R  RA L  +      GV   ++++ ++ S+     D +  +   G   P +        R        DVCHDDTCC ETKLLKDA KTHPI+A  T+ P+ S KP SAK +GGKTK KRSK
Sbjct:  296 ANRLTASESSFLKKLLAKQHGTESGDSEEDD-DESVDHLQDARSEPQDDLENDDSQGAGDGEADEASLKV-----MREWRAALHRLRLTRIEGV-NASITTIQNDSKD---KDGNVVKALVGNPMPTAK-------RWLLQLAAVDVCHDDTCCPETKLLKDAVKTHPIKAEDTETPVASGKPTSAKAKGGKTKPKRSK 477
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BLAST of Ec-00_000090.2 vs. uniprot
Match: D7FUP6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUP6_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 4.300e-16
Identity = 42/54 (77.78%), Postives = 46/54 (85.19%), Query Frame = 2 
Query:  485 DVCHDDTCCSETKLLKDAFKTHPIEAHHTQEPMVSAKPKSAKRRGGKTKRKRSK 646
            DVCHD TCC ETKLLKDA KTHPIEA  T+ P+ SAKP +AKR+GGKTKRKRSK
Sbjct:  228 DVCHDGTCCPETKLLKDAVKTHPIEADDTETPVASAKPTNAKRKGGKTKRKRSK 281
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BLAST of Ec-00_000090.2 vs. uniprot
Match: D7G6L1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6L1_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 4.780e-15
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 2 
Query:   50 ANRRTASGKSYVKKLLAKQNAVESGDSEEADADESVDELEDARAEPH 190
            ANRRTASGKSYVKKLLAKQNAVESGDSEEADADESVDELEDARAEPH
Sbjct:  393 ANRRTASGKSYVKKLLAKQNAVESGDSEEADADESVDELEDARAEPH 439
[Close]
BLAST of Ec-00_000090.2 vs. uniprot
Match: A0A6H5JAW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAW4_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 4.660e-14
Identity = 42/78 (53.85%), Postives = 51/78 (65.38%), Query Frame = 3 
Query:  252 PPPGPLRACVAAALPWKKSSLKVMREWRAALYHLRNTRVDGINAAIATIQSDSKDAGGQCRGEPRADSQEWLLQLAAV 485
            PP    RAC+AAALPWKK+SLK+MREWRAAL+ LRNTR++G+NAA      D KD+          +   WL Q AAV
Sbjct:   10 PPLDHFRACLAAALPWKKASLKMMREWRAALHRLRNTRIEGVNAA----HDDPKDSED-------GEWLRWLRQRAAV 76
[Close]
BLAST of Ec-00_000090.2 vs. uniprot
Match: A0A6H5JHM4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHM4_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 8.290e-10
Identity = 61/180 (33.89%), Postives = 77/180 (42.78%), Query Frame = 2 
Query:  191 VTSKATTHRAPATARLTKVKTP-------------PWTTSGLRRCRATLEEILF----EGDAGVARGTVSSTKHPSRRH*RSDCHH-PERFEGRGR-PVSW--------------GTPCRQPRVAPSACGSDVCHDDTCCSETKLLKDAFKTHPIEAHHTQEPMVSAKPKSAKRRGGKTK 631
            VTSKATT +     +  +++ P             PW  + L+  R   E +      +GD  V    V +    S R      HH P  F       V W                PC   R        +VCHDDT   ETKLLKDA   HPI A  T++P+ SAKPKSA+R+GGKTK
Sbjct:    2 VTSKATTQQGAGDGKADEIEDPSLVHFRACLAGALPWKKASLKAMREWREALYRNDSKDGDGNVVEALVGNPMPASNRRLHVLAHHSPSSFLCACTCTVGWLINLDVLPVLPWPAFLPCHPRRWLLLLAAVNVCHDDTWYPETKLLKDAVNMHPIVADDTEKPVASAKPKSAERKGGKTK 181
The following BLAST results are available for this feature:
BLAST of Ec-00_000090.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JUG3_9PHAE3.440e-2644.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHM3_ECTSI5.120e-2442.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FUP6_ECTSI4.300e-1677.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G6L1_ECTSI4.780e-15100.00Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5JAW4_9PHAE4.660e-1453.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHM4_9PHAE8.290e-1033.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:127927..130299 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length1312
Hectar predicted targeting categoryother localisation
Gene idEc-00_000090.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000090Ec-00_000090Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 127927..133843 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000090.2Ec-00_000090.2Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 128105..128749 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000090.2.4Ec-00_000090.2.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 127927..128775 -
Ec-00_000090.2.3Ec-00_000090.2.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 129015..129285 -
Ec-00_000090.2.2Ec-00_000090.2.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 129562..129703 -
Ec-00_000090.2.1Ec-00_000090.2.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 130250..130299 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0000903UTR:Ec-00_000090.2Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 127927..128104 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000090.2CDS:Ec-00_000090.2Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 128105..128749 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0000905UTR:Ec-00_000090.2Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 128750..128775 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_000090.2 ID=Ec-00_000090.2|Name=Ec-00_000090.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=215bp
MSATTTPAVPRRSSSRMPSRRTPSRRTTRRNPWLAPSPRALSGGVARPNV
NAPSDCALTPPSLVPPANSCILAGGLSRAWAGYYPWNSSYHYVVLAGGVM
GLNPGDSDFLWRKASFSLALSPWCGTPYTAGNTIREENKTFSPPAISPLT
RFASFHECPYQLPWKSTSLPPLPSNVPKRSLHFHQWHFTLHYCTNDPLAI
TSMEVHFTSMTFTQ*
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spliced messenger RNA

>Ec-00_000090.2 ID=Ec-00_000090.2|Name=Ec-00_000090.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1312bp|location=Sequence derived from alignment at chr_00:127927..130299- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
CATGAGCCTTTTCGGTGGCCCCGTCGACGTGAATATCAGGGGATGAGACG
GCAAATCGCCGAACGGCTTCGGGAAAATCTTACGTGAAAAAACTCCTCGC
CAAACAGAACGCGGTCGAGTCAGGGGACTCAGAGGAAGCTGATGCTGACG
AGTCCGTTGACGAGCTCGAGGACGCGCGCGCCGAGCCACATGGTGACCTC
GAAAGCGACGACTCACAGGGCGCCGGCGACGGCTCGGCTGACGAAGGTGA
AGACCCCCCCCTGGACCACTTCGGGCCTGCGTCGCTGCCGCGCTACCCTG
GAAGAAATCCTCTTTGAAGGTGATGCGGGAGTGGCGCGCGGCACTGTATC
ATCTACGAAACACCCGAGTCGACGGCATTAACGCAGCGATTGCCACCATC
CAGAGCGATTCGAAGGACGCGGGAGGCCAGTGTCGTGGGGAACCCCGTGC
CGACAGCCAAGAGGTGGCTCCTTCAGCTTGCGGCAGTGGATGTCTGCCAC
GACGACACCTGCTGTTCCGAGACGAAGCTCCTCAAGGATGCCTTCAAGAC
GCACCCCATCGAGGCGCACCACACGCAGGAACCCATGGTTAGCGCCAAGC
CCAAGAGCGCTAAGCGGAGGGGTGGCAAGACCAAACGTAAACGCTCCAAG
TGATTGCGCGTTGACACCGCCCAGCCTCGTACCCCCAGCCAATTCGTGCA
TTTTAGCGGGGGGGTTATCCCGGGCTTGGGCGGGGTATTATCCCTGGAAT
AGTTCGTATCATTACGTCGTTCTAGCGGGCGGTGTTATGGGGTTGAACCC
TGGCGACAGTGACTTTTTATGGCGAAAAGCAAGTTTTTCTCTCGCGTTAA
GTCCTTGGTGTGGAACTCCGTACACCGCTGGAAATACTATTCGAGAGGAA
AACAAGACATTTTCACCCCCCGCCATCAGTCCATTGACACGTTTTGCCAG
CTTCCATGAATGTCCTTACCAGCTTCCATGGAAGTCCACTTCACTTCCAC
CACTTCCGTCGAATGTCCCCAAGCGCTCCCTTCACTTCCACCAGTGGCAT
TTCACCCTACACTATTGCACAAATGATCCTCTCGCAATAACCTCCATGGA
AGTCCACTTCACTTCCATGACTTTCACACAATGAACCCAAGCGCTCACTT
CACTTCCACAAATGGTCTTTCACCCTACACTATTGGACAAATGATCTTCT
TGACAATTTCCATCGAAGTCATCTCCACTCCCATGACTTCCATCGACTAA
ACTATAGCGCTCCCTTCAATTCCATCAATAGCGTCTCACCCTACACTATT
GGACGAATGATC
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protein sequence of Ec-00_000090.2

>Ec-00_000090.2 ID=Ec-00_000090.2|Name=Ec-00_000090.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=215bp
MSATTTPAVPRRSSSRMPSRRTPSRRTTRRNPWLAPSPRALSGGVARPNV
NAPSDCALTPPSLVPPANSCILAGGLSRAWAGYYPWNSSYHYVVLAGGVM
GLNPGDSDFLWRKASFSLALSPWCGTPYTAGNTIREENKTFSPPAISPLT
RFASFHECPYQLPWKSTSLPPLPSNVPKRSLHFHQWHFTLHYCTNDPLAI
TSMEVHFTSMTFTQ*
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mRNA from alignment at chr_00:127927..130299-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_000090.2 ID=Ec-00_000090.2|Name=Ec-00_000090.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2373bp|location=Sequence derived from alignment at chr_00:127927..130299- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
CATGAGCCTTTTCGGTGGCCCCGTCGACGTGAATATCAGGGGATGAGACG
GTGTGTGACAATACACTTGATGTAACGCTGTTGTCCATAGCAGAGATTGT
GGGGTGAACATGTTCGGCACCTTTGCCGGCTAACGGTCTTCAATAGATGA
AGTTGGCGTATTCCGCGCACTTCGTCGTGTGGAATGAAGACAGATGGCGG
TATAAGGATGAGGTTACCCTAGGCAACAGAGCGAATAGTATTAAGAGGAT
ATTGCGACGAAAACACCCAACCCACAAGCGTTCGTTTCATACACCTCTGA
CCTTTCACGTGACTTGGTCCTTGAAAGCGCAATATGTCCGTACGACAAGG
ACGTCGTCTGATGTTCCTTCCTAACGATATTCCACCCCGCCTCTATTGCT
GACATACTTCAACAATATGGTCGGCTCCCGCGTGACCGGTGCAAAACTGG
GTATCAAACGAAATCGACTTTCGCACGGACACAGGAAGACCTGCGAGGCC
TTGCACAGATTTCAGACACTACCTCCATCTCCGAGGACATAGTATCGGCG
ACGTGCTCACCAACCTTGCCGCCCCGTTCTCCGCCCGGGTTTGCAGGCAA
ATCGCCGAACGGCTTCGGGAAAATCTTACGTGAAAAAACTCCTCGCCAAA
CAGAACGCGGTCGAGTCAGGGGACTCAGAGGAAGCTGATGCTGACGAGTC
CGTTGACGAGCTCGAGGACGCGCGCGCCGAGCCACATGGTAAGAACGACG
TTGTCCTCGTCGTGAAGGGCTCAATCGCTAACTCGATCCAAACTTTTCGT
ATCCCCATCTCACCGTAGGCGTAGGCCGCAGATGAACGACCGAACCACGG
AGCGGGCTCATGTAAGATCATCTCGGGGTGTGTATATGGAGAGCGTATCC
GTCGGGCACCCACCATTAATCATGCAAACCTGCTTTTTCCGTACCGATCT
TCTCATGGTGACCTAATATTACTGCATACTTCATGCTACCGCGGACGTCA
TCGTTGCCTTGCAGGTGACCTCGAAAGCGACGACTCACAGGGCGCCGGCG
ACGGCTCGGCTGACGAAGGTGAAGACCCCCCCCTGGACCACTTCGGGCCT
GCGTCGCTGCCGCGCTACCCTGGAAGAAATCCTCTTTGAAGGTGATGCGG
GAGTGGCGCGCGGCACTGTATCATCTACGAAACACCCGAGTCGACGGCAT
TAACGCAGCGATTGCCACCATCCAGAGCGATTCGAAGGACGCGGGAGGCC
AGTGTCGTGGGGAACCCCGTGCCGACAGCCAAGAGGTACACGGGAGGCTC
ATAAATTGATGGGCTTTCATGGTTTTGTGTACAGACTCCTGCACTAAGGT
TGAACTTACGGAAGCAACGACAGACGTCTCCACGTCCTTGCCCACGACTC
CCCGAGTTACGGCCCCCGTTTCGTTCCTGTGCGCTTGGACATGTACGGCT
GGCTGGTTGATAAACCTCGACGTGCTACCCGTGCTACCTTGTCCTGCTTC
CTTACCATATCGTGATCCTCGCAGGTGGCTCCTTCAGCTTGCGGCAGTGG
ATGTCTGCCACGACGACACCTGCTGTTCCGAGACGAAGCTCCTCAAGGAT
GCCTTCAAGACGCACCCCATCGAGGCGCACCACACGCAGGAACCCATGGT
TAGCGCCAAGCCCAAGAGCGCTAAGCGGAGGGGTGGCAAGACCAAACGTA
AACGCTCCAAGTGATTGCGCGTTGACACCGCCCAGCCTCGTACCCCCAGC
CAATTCGTGCATTTTAGCGGGGGGGTTATCCCGGGCTTGGGCGGGGTATT
ATCCCTGGAATAGTTCGTATCATTACGTCGTTCTAGCGGGCGGTGTTATG
GGGTTGAACCCTGGCGACAGTGACTTTTTATGGCGAAAAGCAAGTTTTTC
TCTCGCGTTAAGTCCTTGGTGTGGAACTCCGTACACCGCTGGAAATACTA
TTCGAGAGGAAAACAAGACATTTTCACCCCCCGCCATCAGTCCATTGACA
CGTTTTGCCAGCTTCCATGAATGTCCTTACCAGCTTCCATGGAAGTCCAC
TTCACTTCCACCACTTCCGTCGAATGTCCCCAAGCGCTCCCTTCACTTCC
ACCAGTGGCATTTCACCCTACACTATTGCACAAATGATCCTCTCGCAATA
ACCTCCATGGAAGTCCACTTCACTTCCATGACTTTCACACAATGAACCCA
AGCGCTCACTTCACTTCCACAAATGGTCTTTCACCCTACACTATTGGACA
AATGATCTTCTTGACAATTTCCATCGAAGTCATCTCCACTCCCATGACTT
CCATCGACTAAACTATAGCGCTCCCTTCAATTCCATCAATAGCGTCTCAC
CCTACACTATTGGACGAATGATC
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Coding sequence (CDS) from alignment at chr_00:127927..130299-

>Ec-00_000090.2 ID=Ec-00_000090.2|Name=Ec-00_000090.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=645bp|location=Sequence derived from alignment at chr_00:127927..130299- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTCTGCCACGACGACACCTGCTGTTCCGAGACGAAGCTCCTCAAGGAT
GCCTTCAAGACGCACCCCATCGAGGCGCACCACACGCAGGAACCCATGGT
TAGCGCCAAGCCCAAGAGCGCTAAGCGGAGGGGTGGCAAGACCAAACGTA
AACGCTCCAAGTGATTGCGCGTTGACACCGCCCAGCCTCGTACCCCCAGC
CAATTCGTGCATTTTAGCGGGGGGGTTATCCCGGGCTTGGGCGGGGTATT
ATCCCTGGAATAGTTCGTATCATTACGTCGTTCTAGCGGGCGGTGTTATG
GGGTTGAACCCTGGCGACAGTGACTTTTTATGGCGAAAAGCAAGTTTTTC
TCTCGCGTTAAGTCCTTGGTGTGGAACTCCGTACACCGCTGGAAATACTA
TTCGAGAGGAAAACAAGACATTTTCACCCCCCGCCATCAGTCCATTGACA
CGTTTTGCCAGCTTCCATGAATGTCCTTACCAGCTTCCATGGAAGTCCAC
TTCACTTCCACCACTTCCGTCGAATGTCCCCAAGCGCTCCCTTCACTTCC
ACCAGTGGCATTTCACCCTACACTATTGCACAAATGATCCTCTCGCAATA
ACCTCCATGGAAGTCCACTTCACTTCCATGACTTTCACACAATGA
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Synonyms
The feature 'Ec-00_000090.2' has the following synonyms
Synonym
Esi1020_0002
Esi_1020_0002