Ec-00_000090.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_000090.1
Unique NameEc-00_000090.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length434
Homology
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BLAST of Ec-00_000090.1 vs. uniprot
Match: D7G6L1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6L1_ECTSI)

HSP 1 Score: 711 bits (1834), Expect = 5.440e-255
Identity = 434/435 (99.77%), Postives = 434/435 (99.77%), Query Frame = 3 
Query:   63 PPMYGVRDVFGDSDDDIDDNRPIHQVGDTDXXXXXXXXXXXCSRDDSDDSVACVDPPTLSDKQRKGGRPTRKGQRSTSPRAGAAGCPVDLAREQRGEEGATRKKASKGASGDPLDVDSGVSEQPAPRGKKKASVKTRKAGXXXXXXXXXXXXXXXXMSEPVSEFESESESDTTRTLRSARRKVTPEQRKNLTEMSKSTCPDRIKERDAAFAAHNESLRRGRGRLSWPRKALRKKGEAKSATVAAQKARTTKETPAPTAARRNNDKNVKAPPGTKKPAATLGQSAAKSKKILNKXXXXXXXXXXRAAPAAANLDPSKNDQASKGPVSASPSNKSGREEKKTRDDTTSTANRRTASGKSYVKKLLAKQNAVESGDSEEADADESVDELEDARAEPHGDLESDDSQGAGDGSADEGEDPPLDHFGPASLPRYPGRNPL 1367
            P MYGVRDVFGDSDDDIDDNRPIHQVGDTDXXXXXXXXXXXCSRDDSDDSVACVDPPTLSDKQRKGGRPTRKGQRSTSPRAGAAGCPVDLAREQRGEEGATRKKASKGASGDPLDVDSGVSEQPAPRGKKKASVKTRKAGXXXXXXXXXXXXXXXXMSEPVSEFESESESDTTRTLRSARRKVTPEQRKNLTEMSKSTCPDRIKERDAAFAAHNESLRRGRGRLSWPRKALRKKGEAKSATVAAQKARTTKETPAPTAARRNNDKNVKAPPGTKKPAATLGQSAAKSKKILNKXXXXXXXXXXRAAPAAANLDPSKNDQASKGPVSASPSNKSGREEKKTRDDTTSTANRRTASGKSYVKKLLAKQNAVESGDSEEADADESVDELEDARAEPHGDLESDDSQGAGDGSADEGEDPPLDHFGPASLPRYPGRNPL
Sbjct:   46 PLMYGVRDVFGDSDDDIDDNRPIHQVGDTDXXXXXXXXXXXCSRDDSDDSVACVDPPTLSDKQRKGGRPTRKGQRSTSPRAGAAGCPVDLAREQRGEEGATRKKASKGASGDPLDVDSGVSEQPAPRGKKKASVKTRKAGXXXXXXXXXXXXXXXXMSEPVSEFESESESDTTRTLRSARRKVTPEQRKNLTEMSKSTCPDRIKERDAAFAAHNESLRRGRGRLSWPRKALRKKGEAKSATVAAQKARTTKETPAPTAARRNNDKNVKAPPGTKKPAATLGQSAAKSKKILNKXXXXXXXXXXRAAPAAANLDPSKNDQASKGPVSASPSNKSGREEKKTRDDTTSTANRRTASGKSYVKKLLAKQNAVESGDSEEADADESVDELEDARAEPHGDLESDDSQGAGDGSADEGEDPPLDHFGPASLPRYPGRNPL 480
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BLAST of Ec-00_000090.1 vs. uniprot
Match: D7G601_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G601_ECTSI)

HSP 1 Score: 376 bits (965), Expect = 1.830e-125
Identity = 230/233 (98.71%), Postives = 232/233 (99.57%), Query Frame = 3 
Query:   63 PPMYGVRDVFGDSDDDIDDNRPIHQVGDTDXXXXXXXXXXXCSRDDSDDSVACVDPPTLSDKQRKGGRPTRKGQRSTSPRAGAAGCPVDLAREQRGEEGATRKKASKGASGDPLDVDSGVSEQPAPRGKKKASVKTRKAGXXXXXXXXXXXXXXXXMSEPVSEFESESESDTTRTLRSARRKVTPEQRKNLTEMSKSTCPDRIKERDAAFAAHNESLRRGRGRLSWPRKALRK 761
            P MYGVRDVFGDSDDDIDDNRPIHQVGDTDXXXXXXXXXXXCSRDDSDDSVACVDPPTLSDKQRKGGRPTRKGQRSTSPRAGAAGCPVDLAREQRGEEGATRKKASKGASGDPLDVDSGVSEQPAPRGKKKASVKTRKAGXXXXXXXXXXXXXXXX+SEPVSEFESESESDTTRTLRSARRKVTPEQRKNLTEMSKSTCPDRIKERDAAFAAHNESLRRGRGRLSWPRKALR+
Sbjct:   87 PLMYGVRDVFGDSDDDIDDNRPIHQVGDTDXXXXXXXXXXXCSRDDSDDSVACVDPPTLSDKQRKGGRPTRKGQRSTSPRAGAAGCPVDLAREQRGEEGATRKKASKGASGDPLDVDSGVSEQPAPRGKKKASVKTRKAGXXXXXXXXXXXXXXXXVSEPVSEFESESESDTTRTLRSARRKVTPEQRKNLTEMSKSTCPDRIKERDAAFAAHNESLRRGRGRLSWPRKALRR 319
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BLAST of Ec-00_000090.1 vs. uniprot
Match: A0A6H5JUG3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUG3_9PHAE)

HSP 1 Score: 368 bits (944), Expect = 1.030e-119
Identity = 258/428 (60.28%), Postives = 277/428 (64.72%), Query Frame = 3 
Query:   63 PPMYGVRDVFGDSDDDIDDNRPIHQVGDTDXXXXXXXXXXXCSRDDSDDSVACVDPPTLSDKQRKGGRPTRKGQRSTSPRAGAAGCPVDLAREQRGEEGATRKKASKGASGDPLDVDSGVSEQPAPRGKKKASVKTRKAGXXXXXXXXXXXXXXXXMSEPVSEFESESESDTTRTLRSARRKVTPEQRKNLTEMSKSTCPDRIKERDAAFAAHNESLRR-------GRGRLSWPRKALRKKGEAKSATVAAQKARTTKETPAPTAARRNNDKNVKAPPGTKKPAATLGQSAAKSKKILNKXXXXXXXXXXRAAPAAANLDPSKNDQASKGPVSASPSNKSGREEKKTRDDTTSTANRRTASGKSYVKKLLAKQNAVESGDSEEADADESVDELEDARAEPHGDLESDDSQGAGDGSADEGEDPPLDHF 1325
            PP+ GVRDV  DSDD I+DNRPIH+VGDTD           CSRDDSDDSVAC+ PPTL DK RKGGRPTRKGQR TSPRAGAAG PVDL  EQRGEEGATRKKASKGASGDPLDVDSG SEQPAP+GK+KASVKTRKA                         E    SDTT +LRSARRKVTPEQ K LTE+SKSTCPDRIKER+AAFAA +E  R+        +  +   +   RKK +AKSA VAA+KA                      PPGTKK AATL  SAAKSK  LN XXXXXXXXXX       NLD  KNDQ                            ANR TAS KS++KKLLAKQN VESGD EE D DESVD+LEDARAEPHGDLES DSQGAGDG ADE ED PLDHF
Sbjct:   22 PPIDGVRDVLDDSDDGINDNRPIHRVGDTDDEGDDEDGANGCSRDDSDDSVACMHPPTLPDKPRKGGRPTRKGQRPTSPRAGAAGSPVDLVTEQRGEEGATRKKASKGASGDPLDVDSGGSEQPAPKGKQKASVKTRKA-------------------------EXXXXSDTTHSLRSARRKVTPEQGKKLTEVSKSTCPDRIKERNAAFAAADEVSRKRVRQAVLAQEGVEGAKLLKRKKAKAKSAAVAARKA----------------------PPGTKKAAATLDPSAAKSKTSLNXXXXXXXXXXXXXXXXXXNLDSCKNDQ----------------------------ANRLTASEKSFLKKLLAKQNGVESGDLEEDD-DESVDDLEDARAEPHGDLESYDSQGAGDGKADEDEDSPLDHF 373
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BLAST of Ec-00_000090.1 vs. uniprot
Match: A0A6H5JEG3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEG3_9PHAE)

HSP 1 Score: 326 bits (836), Expect = 1.000e-105
Identity = 222/330 (67.27%), Postives = 234/330 (70.91%), Query Frame = 3 
Query:   63 PPMYGVRDVFGDSDDDIDDNRPIHQVGDTDXXXXXXXXXXXCSRDDSDDSVACVDPPTLSDKQRKGGRPTRKGQRSTSPRAGAAGCPVDLAREQRGEEGATRKKASKGASGDPLDVDSGVSEQPAPRGKKKASVKTRKAGXXXXXXXXXXXXXXXXMSEPVSEFESESESDTTRTLRSARRKVTPEQRKNLTEMSKSTCPDRIKERDAAFAAHNESLRRGR---GRLSWPRKA--------LRKKGEAKSATVAAQKARTTKETPAPTAARRNNDKNVKAPPGTKKPAATLGQSAAKSKKILNKXXXXXXXXXXRAAPAAANLDPSKNDQ 1019
            PP++GVRD                      XXXXXXXXXXXCSRDDS+DSVAC DPPTL D QRKGGRPTRKGQRSTSPRAGAAG PVDLAREQRGEEGATRKKAS+GASGDPLDVDS   EQPAP+GKKKASVKTR A                 +SEPVSE       DTT TLRSARRKV PEQRK LTEMSKSTC D+IKERDAAFAAHNE  ++ +   G L  P +          RKKGEAKSA VAA+KARTTKETPA TAA R NDKNVKAP GTKKPAATL  SAAKSKK LNK          RAAPAAANLDPSKNDQ
Sbjct:   22 PPIHGVRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSRDDSNDSVACADPPTLPDNQRKGGRPTRKGQRSTSPRAGAAGPPVDLAREQRGEEGATRKKASRGASGDPLDVDSVGPEQPAPKGKKKASVKTRNA-------------CGKKVSEPVSEXXXXXXXDTTHTLRSARRKVPPEQRKKLTEMSKSTCSDQIKERDAAFAAHNEVSKKRKSNIGVLELPARVDAKEAKLLKRKKGEAKSAAVAARKARTTKETPALTAALRYNDKNVKAPFGTKKPAATLDPSAAKSKKRLNKALPGTKKSAERAAPAAANLDPSKNDQ 338
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BLAST of Ec-00_000090.1 vs. uniprot
Match: D7FHM3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHM3_ECTSI)

HSP 1 Score: 277 bits (709), Expect = 7.690e-85
Identity = 215/354 (60.73%), Postives = 238/354 (67.23%), Query Frame = 3 
Query:  237 LSDKQRKGGRPTRKGQRSTSPRAGAAGCPVDLAREQRGEEGATRKKASKGASGDPLDVDSGVSEQPAPRGKKKASVKTRKAGXXXXXXXXXXXXXXXXMSEPVSEFESESESDTTRTLRSARRKVTPEQRKNLTEMSKSTCPDRIKERDAAFAAHNESLRRGRGRLSWPRKALRKKGEAKSATVAAQKARTTKETPAPTAARRNNDKNVKAPPGTKKPAATLGQSAAKSKKILNKXXXXXXXXXXRAAPAAANLDPSKNDQASKGPVSASPSNKSGREEKKTRDDTTSTANRRTASGKSYVKKLLAKQNAVESGDSEEADADESVDELEDARAEPHGDLESDDSQGAGDGSADE 1298
            + D+ RKGGRPTRK QRST P AGA G  VDL  EQRGE+G  RKKASKGASGDPLDVDSG SEQ AP+G+KKASVKTR+AGXXXXXXXXXXXXXXXX    VSE  SESESDTT T+RSARRK+TPEQRK LTE+SKSTCPDR+KER+AA AA +E  R+   +L       RKKGEAKSA VAA+K      TPAPTAA   ND NVKA P  K+PA                          RAAPAAA+LDP KNDQ                            ANR TAS  S++KKLLAKQ+  ESGDSEE D DESVD L+DAR+EP  DLE+DDSQGAGDG ADE
Sbjct:   75 IDDQMRKGGRPTRKRQRSTPPGAGAVGSTVDLGTEQRGEKGPMRKKASKGASGDPLDVDSGASEQSAPKGRKKASVKTREAGXXXXXXXXXXXXXXXXK---VSE--SESESDTTHTIRSARRKMTPEQRKQLTEISKSTCPDRMKERNAALAAADEVSRKREAKLL-----KRKKGEAKSAAVAARKG-----TPAPTAALHKNDNNVKAGPSNKQPAG-------------------------RAAPAAASLDPCKNDQ----------------------------ANRLTASESSFLKKLLAKQHGTESGDSEEDD-DESVDHLQDARSEPQDDLENDDSQGAGDGEADE 359
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BLAST of Ec-00_000090.1 vs. uniprot
Match: D7FL21_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL21_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 3.690e-17
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 1 
Query:   73 MESATSLVIRTTTLTTTDPSIKLGTRMMTATARMGRTAAAATTLTIASHA 222
            MESATSLVIRTTTLTTTDPSIKLGTRMMTATARMGRTAAAATTLTIASHA
Sbjct:    1 MESATSLVIRTTTLTTTDPSIKLGTRMMTATARMGRTAAAATTLTIASHA 50
[Close]
BLAST of Ec-00_000090.1 vs. uniprot
Match: D7FUP6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUP6_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 1.750e-9
Identity = 44/61 (72.13%), Postives = 45/61 (73.77%), Query Frame = 3 
Query:  756 RKKGEAKSATVAAQKARTTKETPAPTAARRNNDKNVKAPPGTKKPAATLGQSAAKSKKILN 938
            RKKGEAKSA VA +K     E PAPTAA   NDKN KAPPGTKKPAATL   AAKSKK LN
Sbjct:   17 RKKGEAKSAAVAPRK-----EAPAPTAALHKNDKNEKAPPGTKKPAATLDPPAAKSKKSLN 72
The following BLAST results are available for this feature:
BLAST of Ec-00_000090.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7G6L1_ECTSI5.440e-25599.77Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7G601_ECTSI1.830e-12598.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUG3_9PHAE1.030e-11960.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEG3_9PHAE1.000e-10567.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHM3_ECTSI7.690e-8560.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FL21_ECTSI3.690e-17100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FUP6_ECTSI1.750e-972.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:129161..133719 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length1371
Hectar predicted targeting categoryother localisation
Gene idEc-00_000090.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000090Ec-00_000090Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 127927..133843 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000090.1Ec-00_000090.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 129161..133650 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000090.1.8Ec-00_000090.1.8Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 129161..129285 -
Ec-00_000090.1.7Ec-00_000090.1.7Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 129562..129703 -
Ec-00_000090.1.6Ec-00_000090.1.6Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 130335..130418 -
Ec-00_000090.1.5Ec-00_000090.1.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 131504..131581 -
Ec-00_000090.1.4Ec-00_000090.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 131774..131848 -
Ec-00_000090.1.3Ec-00_000090.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 132037..132102 -
Ec-00_000090.1.2Ec-00_000090.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 132596..132638 -
Ec-00_000090.1.1Ec-00_000090.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 132962..133719 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000090.1CDS:Ec-00_000090.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 129161..129285 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0000905UTR:Ec-00_000090.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 133651..133719 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_000090.1 ID=Ec-00_000090.1|Name=Ec-00_000090.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=434bp
MYGVRDVFGDSDDDIDDNRPIHQVGDTDDDGDGEDGANGCSRDDSDDSVA
CVDPPTLSDKQRKGGRPTRKGQRSTSPRAGAAGCPVDLAREQRGEEGATR
KKASKGASGDPLDVDSGVSEQPAPRGKKKASVKTRKAGGKKKAPANTKKT
AGKKMSEPVSEFESESESDTTRTLRSARRKVTPEQRKNLTEMSKSTCPDR
IKERDAAFAAHNESLRRGRGRLSWPRKALRKKGEAKSATVAAQKARTTKE
TPAPTAARRNNDKNVKAPPGTKKPAATLGQSAAKSKKILNKAAPGTNKPA
ERAAPAAANLDPSKNDQASKGPVSASPSNKSGREEKKTRDDTTSTANRRT
ASGKSYVKKLLAKQNAVESGDSEEADADESVDELEDARAEPHGDLESDDS
QGAGDGSADEGEDPPLDHFGPASLPRYPGRNPL*
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spliced messenger RNA

>Ec-00_000090.1 ID=Ec-00_000090.1|Name=Ec-00_000090.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1371bp|location=Sequence derived from alignment at chr_00:129161..133719- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
CGCACTCAGGTGCTTGCCAGTACCAGAGCTAAGACCGCTGCCGCCACGGC
GACACCCTGGGTCCCCCTTATGTATGGAGTCCGCGACGTCTTTGGTGATT
CGGACGACGACATTGACGACAACCGACCCATCCATCAAGTTGGGGACACG
GATGATGACGGCGACGGCGAGGATGGGGCGAACGGCTGCAGCCGCGACGA
CTCTGACGATAGCGTCGCATGCGTAGATCCGCCTACCCTTTCTGACAAAC
AGAGGAAGGGAGGCCGCCCGACCCGCAAGGGACAACGGTCGACGTCTCCG
CGGGCCGGCGCGGCCGGTTGTCCCGTCGACCTGGCGAGAGAGCAGCGGGG
CGAGGAGGGGGCCACGCGGAAGAAAGCGTCCAAGGGCGCGTCGGGGGATC
CCCTGGATGTAGATTCGGGAGTGTCGGAGCAGCCGGCGCCTAGGGGCAAG
AAGAAGGCATCCGTCAAGACTAGGAAGGCCGGTGGGAAGAAGAAGGCACC
CGCCAATACTAAGAAGACCGCCGGGAAGAAGATGTCCGAGCCCGTGTCCG
AGTTCGAGTCAGAGTCAGAGTCCGACACCACCCGTACGCTGCGGTCGGCC
CGGAGGAAGGTGACTCCTGAGCAGAGGAAGAACCTTACCGAAATGTCGAA
GTCGACATGCCCTGACCGGATCAAGGAGCGCGACGCCGCCTTCGCTGCCC
ACAACGAGTCTCTAAGAAGAGGGCGAGGCAGGCTGTCCTGGCCCAGGAAG
GCGTTGAGGAAGAAGGGGGAGGCGAAGAGCGCAACGGTTGCGGCCCAGAA
GGCCCGCACAACGAAGGAGACGCCTGCCCCAACTGCGGCCCGTCGCAACA
ACGACAAGAACGTTAAGGCGCCCCCCGGCACGAAGAAGCCAGCCGCAACA
CTCGGCCAATCTGCGGCGAAGAGCAAGAAAATTTTGAACAAGGCGGCCCC
CGGCACGAATAAGCCAGCCGAGAGGGCTGCCCCCGCCGCGGCGAACCTGG
ACCCAAGCAAGAATGATCAGGCTAGTAAGGGTCCTGTGTCGGCGAGCCCG
TCGAACAAGTCTGGACGCGAGGAAAAGAAGACGCGTGATGACACGACTTC
CACGGCAAATCGCCGAACGGCTTCGGGAAAATCTTACGTGAAAAAACTCC
TCGCCAAACAGAACGCGGTCGAGTCAGGGGACTCAGAGGAAGCTGATGCT
GACGAGTCCGTTGACGAGCTCGAGGACGCGCGCGCCGAGCCACATGGTGA
CCTCGAAAGCGACGACTCACAGGGCGCCGGCGACGGCTCGGCTGACGAAG
GTGAAGACCCCCCCCTGGACCACTTCGGGCCTGCGTCGCTGCCGCGCTAC
CCTGGAAGAAATCCTCTTTGA
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protein sequence of Ec-00_000090.1

>Ec-00_000090.1 ID=Ec-00_000090.1|Name=Ec-00_000090.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=434bp
MYGVRDVFGDSDDDIDDNRPIHQVGDTDDDGDGEDGANGCSRDDSDDSVA
CVDPPTLSDKQRKGGRPTRKGQRSTSPRAGAAGCPVDLAREQRGEEGATR
KKASKGASGDPLDVDSGVSEQPAPRGKKKASVKTRKAGGKKKAPANTKKT
AGKKMSEPVSEFESESESDTTRTLRSARRKVTPEQRKNLTEMSKSTCPDR
IKERDAAFAAHNESLRRGRGRLSWPRKALRKKGEAKSATVAAQKARTTKE
TPAPTAARRNNDKNVKAPPGTKKPAATLGQSAAKSKKILNKAAPGTNKPA
ERAAPAAANLDPSKNDQASKGPVSASPSNKSGREEKKTRDDTTSTANRRT
ASGKSYVKKLLAKQNAVESGDSEEADADESVDELEDARAEPHGDLESDDS
QGAGDGSADEGEDPPLDHFGPASLPRYPGRNPL*
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mRNA from alignment at chr_00:129161..133719-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_000090.1 ID=Ec-00_000090.1|Name=Ec-00_000090.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=4559bp|location=Sequence derived from alignment at chr_00:129161..133719- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
CGCACTCAGGTGCTTGCCAGTACCAGAGCTAAGACCGCTGCCGCCACGGC
GACACCCTGGGTCCCCCTTATGTATGGAGTCCGCGACGTCTTTGGTGATT
CGGACGACGACATTGACGACAACCGACCCATCCATCAAGTTGGGGACACG
GATGATGACGGCGACGGCGAGGATGGGGCGAACGGCTGCAGCCGCGACGA
CTCTGACGATAGCGTCGCATGCGTAGATCCGCCTACCCTTTCTGACAAAC
AGAGGAAGGGAGGCCGCCCGACCCGCAAGGGACAACGGTCGACGTCTCCG
CGGGCCGGCGCGGCCGGTTGTCCCGTCGACCTGGCGAGAGAGCAGCGGGG
CGAGGAGGGGGCCACGCGGAAGAAAGCGTCCAAGGGCGCGTCGGGGGATC
CCCTGGATGTAGATTCGGGAGTGTCGGAGCAGCCGGCGCCTAGGGGCAAG
AAGAAGGCATCCGTCAAGACTAGGAAGGCCGGTGGGAAGAAGAAGGCACC
CGCCAATACTAAGAAGACCGCCGGGAAGAAGATGTCCGAGCCCGTGTCCG
AGTTCGAGTCAGAGTCAGAGTCCGACACCACCCGTACGCTGCGGTCGGCC
CGGAGGAAGGTGACTCCTGAGCAGAGGAAGAACCTTACCGAAATGTCGAA
GTCGACATGCCCTGACCGGATCAAGGAGCGCGACGCCGCCTTCGCTGCCC
ACAACGAGTCTCTAAGAAGAGGGCGAGGCAGGCTGTCCTGGCCCAGGAAG
GCGTTGAGGTAAGCAGTACAACGTTGTGGTGTGGTAGTATCGTGTGTTCC
GCCGATGACACCCAACTACCGACGATGTATCTGTCCGCGTAGTGCCGGCA
TGTGTGGAGTTCTACCCGTATTATATGGCCTCGGGTGGATCAGACGTAAA
TCACACTCCGGTTAAGTAGAACGCTATGCCACGTAGTTGAACATAGGCCG
CCTCTGTAGAGTCAAATCTCTGTGGCTACTGATTCGCCGCATGCGAGGGT
AACGTTCCAATAGAAATCTAACATCGGTGTACTCGAATTGCCCGCCCGCG
TTGACGCGAAGGAGGCTACGCTGCTGAAGAGGAAGAAGGGGGAGGCGAAG
AGCGCAACGGTTGCGGCCCAGAAGGCGAGTCTATGGTGGTAATAGTACGC
TCTGTCGGGTCATGCCGCCATAGCATTTCCCCTAACCCTAGCTGAACGCC
ACGAGTCCAACCTACATTTTGGGAACGTATTGTGAATGGGAAAACGCGCT
GGACACTCTTACTGAACGTCATTTGGGTAGCGCCAAGAGGGCTGGCTATT
CTTGCGTGAGTTGGCAGGCACCCTAGACTACCTTACCTGAGAAAGGTGGT
GCCACAAATCAAGCTGTAGGCCGCTGGTCGCCGGCGCCCTCTGCTCGTCT
TGCGCAATGTCAATTCCAGGAGGGCGGCGCCCCCTGCGTGCCCCCCTCCA
AAAGCCCGGGAGCCGCCGAATGTAGGGAAACCCACGTTAGACCATCGTGC
ACGTACACTCACCTTGCCTTCGCTGCTTTGATTATTTCACGGCGCCGACA
ATCCAAACGATACTTTACGTGATAGACTGTTATTGTTCCTTGATACTCGT
CATGGTATCGGTATTAGGCCCGCACAACGAAGGAGACGCCTGCCCCAACT
GCGGCCCGTCGCAACAACGACAAGAACGTTAAGGTAATGGTTGTGAGTTG
TTGTTTTCGCCTTGCTCCTTCCTTAACGCTTCAATGGGCGCGTCCGAGTG
ATGCTGCCGGCCGAGAAGTAAATGACCGAAGCACAAACCCAAGGACAAGA
AACTGTCAATATGTTTCCTATCTGTATCCTCGACATTGCCTCGCGCATCG
TTACTGGTCTTCGTTTTGCAGGCGCCCCCCGGCACGAAGAAGCCAGCCGC
AACACTCGGCCAATCTGCGGCGAAGAGCAAGAAAATTTTGAACAAGGTAT
TGGGGGAGATGTGTTGTATTCGCCTTGACATTGATCCCCCTTCGGTGCTT
CCGTTCTCGCGTCCGAATCATGCTCTAGGTCGAGAGCTGAAAAGCCGCAG
CACGTCCCCAACACGAAGTGCATGTTCATGCCGTTTTCATCAGTATAGTT
TACCTTGCCGCTCGTAGTTGCTCGTCTTCGTCTTGCAGGCGGCCCCCGGC
ACGAATAAGCCAGCCGAGAGGGCTGCCCCCGCCGCGGCGAACCTGGACCC
AAGCAAGAATGATCAGGTAACTCCCCGAGATTATCGTGTTAGAGTCGTTG
CTCCGGTTTAAGAGGGTTGCGTGACCAAGGTCCTCCGGACCCCCCTGTCA
TATCGGTTGTAAGAGGGTGCCGTCATATGTTGGGGCAATCTGTAGTAGGT
AACCTCTTACACAGTGGAGATCGGGAATAACGACAGACACGGTATACTTG
ACTGCAGCCCAGCAATCCATATGCAACGTACTAGATCTATGTAAGGACGT
GTGGTGGACTGTAAAGCGTGGGGTGAGCCGCTTGCCCGGTACGGCATGCC
CAGAGCAGCTCAGGTGTAGTGGTCGCCACGGTGACGCCTTCCATTTCATG
TTCTGTTCATGTTATGGGGTGTAAACGCAGATGAAAATTGCCTCGAAGGC
AAGCTGACATGGCGATTGATGCTAGGAGGCGAAGTACATTCATGTGGTCC
ATGCTTTTAGAACACATGCCGAGTAGTATAACACGATAAAAAGACCCGAC
CACCTCTCCGGCCAGGAGCTATCTAACGGTTGTATTGCCCACCACGAACA
GTGTACTTCGGCCTGCCGCAAACCATACGTCGCCTGCGACTTCTACTGAT
GCAGTGCGATAGTGTTGAAAGCACACGCATTACCTGCATTTGTCAATACT
CCCCGCGTCTGCCTGCAGATTCTCTTGGTGTGGTTTCCATTATACCCTCC
CTGATAGGATCGACACCGCTGATCACAGAGAATGCGACGGTACACGTGAC
TTGCACATACACGTGTTTGTTTACGAGTTATTTCATATCCTTGCATCCTC
CCCGCACTTACCACCATTTCCAACAAAATTCCACTACTTTTAGGCACCTC
CGTCTATATTGTAGTCTCTTCCTGAGTGCGCCTACTTTATCGGGTCAAGT
CCGCGACAACCAATTTCAACCATCCATGTCGGAGCCTCCTCGTCAGAGGT
ATCATCTTCTTACGGAGCCACGACTGCCATAGGCTGATTTAACGCAATCC
GCTTTGAAACCGTGCCCGAATTACGTCAACACGCGTGTCGTTCACGCCAT
AAGACACGCACAAGTTCACATCAATATGTCAATTGATTTTACTTTCGGCA
GGCTAGTAAGGGTCCTGTGTCGGCGAGCCCGTCGAACAAGTCTGGACGCG
AGGAAAAGAAGACGCGTGATGACACGACTTCCACGGTGAGATGATCCCAT
CTCCTGTTTCTCACCGCACGCATGAGCCTTTTCGGTGGCCCCGTCGACGT
GAATATCAGGGGATGAGACGGTGTGTGACAATACACTTGATGTAACGCTG
TTGTCCATAGCAGAGATTGTGGGGTGAACATGTTCGGCACCTTTGCCGGC
TAACGGTCTTCAATAGATGAAGTTGGCGTATTCCGCGCACTTCGTCGTGT
GGAATGAAGACAGATGGCGGTATAAGGATGAGGTTACCCTAGGCAACAGA
GCGAATAGTATTAAGAGGATATTGCGACGAAAACACCCAACCCACAAGCG
TTCGTTTCATACACCTCTGACCTTTCACGTGACTTGGTCCTTGAAAGCGC
AATATGTCCGTACGACAAGGACGTCGTCTGATGTTCCTTCCTAACGATAT
TCCACCCCGCCTCTATTGCTGACATACTTCAACAATATGGTCGGCTCCCG
CGTGACCGGTGCAAAACTGGGTATCAAACGAAATCGACTTTCGCACGGAC
ACAGGAAGACCTGCGAGGCCTTGCACAGATTTCAGACACTACCTCCATCT
CCGAGGACATAGTATCGGCGACGTGCTCACCAACCTTGCCGCCCCGTTCT
CCGCCCGGGTTTGCAGGCAAATCGCCGAACGGCTTCGGGAAAATCTTACG
TGAAAAAACTCCTCGCCAAACAGAACGCGGTCGAGTCAGGGGACTCAGAG
GAAGCTGATGCTGACGAGTCCGTTGACGAGCTCGAGGACGCGCGCGCCGA
GCCACATGGTAAGAACGACGTTGTCCTCGTCGTGAAGGGCTCAATCGCTA
ACTCGATCCAAACTTTTCGTATCCCCATCTCACCGTAGGCGTAGGCCGCA
GATGAACGACCGAACCACGGAGCGGGCTCATGTAAGATCATCTCGGGGTG
TGTATATGGAGAGCGTATCCGTCGGGCACCCACCATTAATCATGCAAACC
TGCTTTTTCCGTACCGATCTTCTCATGGTGACCTAATATTACTGCATACT
TCATGCTACCGCGGACGTCATCGTTGCCTTGCAGGTGACCTCGAAAGCGA
CGACTCACAGGGCGCCGGCGACGGCTCGGCTGACGAAGGTGAAGACCCCC
CCCTGGACCACTTCGGGCCTGCGTCGCTGCCGCGCTACCCTGGAAGAAAT
CCTCTTTGA
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Coding sequence (CDS) from alignment at chr_00:129161..133719-

>Ec-00_000090.1 ID=Ec-00_000090.1|Name=Ec-00_000090.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=1302bp|location=Sequence derived from alignment at chr_00:129161..133719- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTATGGAGTCCGCGACGTCTTTGGTGATTCGGACGACGACATTGACGA
CAACCGACCCATCCATCAAGTTGGGGACACGGATGATGACGGCGACGGCG
AGGATGGGGCGAACGGCTGCAGCCGCGACGACTCTGACGATAGCGTCGCA
TGCGTAGATCCGCCTACCCTTTCTGACAAACAGAGGAAGGGAGGCCGCCC
GACCCGCAAGGGACAACGGTCGACGTCTCCGCGGGCCGGCGCGGCCGGTT
GTCCCGTCGACCTGGCGAGAGAGCAGCGGGGCGAGGAGGGGGCCACGCGG
AAGAAAGCGTCCAAGGGCGCGTCGGGGGATCCCCTGGATGTAGATTCGGG
AGTGTCGGAGCAGCCGGCGCCTAGGGGCAAGAAGAAGGCATCCGTCAAGA
CTAGGAAGGCCGGTGGGAAGAAGAAGGCACCCGCCAATACTAAGAAGACC
GCCGGGAAGAAGATGTCCGAGCCCGTGTCCGAGTTCGAGTCAGAGTCAGA
GTCCGACACCACCCGTACGCTGCGGTCGGCCCGGAGGAAGGTGACTCCTG
AGCAGAGGAAGAACCTTACCGAAATGTCGAAGTCGACATGCCCTGACCGG
ATCAAGGAGCGCGACGCCGCCTTCGCTGCCCACAACGAGTCTCTAAGAAG
AGGGCGAGGCAGGCTGTCCTGGCCCAGGAAGGCGTTGAGGAAGAAGGGGG
AGGCGAAGAGCGCAACGGTTGCGGCCCAGAAGGCCCGCACAACGAAGGAG
ACGCCTGCCCCAACTGCGGCCCGTCGCAACAACGACAAGAACGTTAAGGC
GCCCCCCGGCACGAAGAAGCCAGCCGCAACACTCGGCCAATCTGCGGCGA
AGAGCAAGAAAATTTTGAACAAGGCGGCCCCCGGCACGAATAAGCCAGCC
GAGAGGGCTGCCCCCGCCGCGGCGAACCTGGACCCAAGCAAGAATGATCA
GGCTAGTAAGGGTCCTGTGTCGGCGAGCCCGTCGAACAAGTCTGGACGCG
AGGAAAAGAAGACGCGTGATGACACGACTTCCACGGCAAATCGCCGAACG
GCTTCGGGAAAATCTTACGTGAAAAAACTCCTCGCCAAACAGAACGCGGT
CGAGTCAGGGGACTCAGAGGAAGCTGATGCTGACGAGTCCGTTGACGAGC
TCGAGGACGCGCGCGCCGAGCCACATGGTGACCTCGAAAGCGACGACTCA
CAGGGCGCCGGCGACGGCTCGGCTGACGAAGGTGAAGACCCCCCCCTGGA
CCACTTCGGGCCTGCGTCGCTGCCGCGCTACCCTGGAAGAAATCCTCTTT
GA
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Synonyms
The feature 'Ec-00_000090.1' has the following synonyms
Synonym
Esi1020_0002
Esi_1020_0002