Ec-00_000070.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_000070.2
Unique NameEc-00_000070.2
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length209
Homology
[Close]
BLAST of Ec-00_000070.2 vs. uniprot
Match: D7G4G6_ECTSI (Telomerase reverse transcriptase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4G6_ECTSI)

HSP 1 Score: 356 bits (913), Expect = 1.660e-112
Identity = 193/266 (72.56%), Postives = 198/266 (74.44%), Query Frame = 3 
Query:    3 ISTSKAKAESFVRVMHDEVKTGDWGFSVHQAKRW*TSTWSWRAEREEAGQDNRPFGDSSRSMDTSPLSRTLCTWHDIIPSRPRGGNKPQREPPGGYATISRGLLAAVHPAVSCQVRRVEGDMFPWCGVRFDTRTCEVMANYSRYSKAGVAESLTVDSRRAGACLVGKMKRFLSPKCHALMLDEGEHLGINSRNTVLLNVYEMLLVCAAKTATSALRLPRGPAGNASLLSNGALETTAYAYSLIQNRSNRRNGSFGTSRGVRCVCKA 800
            ISTSKAKAESFVRVMHDEVKTGDWGFSVHQAK                                     TL  +  ++ SR  GG   Q                   P+V  QVRRVEGDMFPWCGVRFDTRTCEVMANYSRYSKAGVAESLTVDSRRAGACLVGKMKRFLSPKCHALMLDEGEHLGINSRNTVLLNVYEMLLVCAAKTATSALRLPRGPAGNASLLSNGALETTAYAYSLIQNRSNRRNGSFGTSRGVRCVCK+
Sbjct:  273 ISTSKAKAESFVRVMHDEVKTGDWGFSVHQAK-------------------------------------TLVNFDMVLESRKGGGGPGQ-------------------PSVRRQVRRVEGDMFPWCGVRFDTRTCEVMANYSRYSKAGVAESLTVDSRRAGACLVGKMKRFLSPKCHALMLDEGEHLGINSRNTVLLNVYEMLLVCAAKTATSALRLPRGPAGNASLLSNGALETTAYAYSLIQNRSNRRNGSFGTSRGVRCVCKS 482
[Close]
BLAST of Ec-00_000070.2 vs. uniprot
Match: A0A6H5K5W1_9PHAE (Telomerase reverse transcriptase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5W1_9PHAE)

HSP 1 Score: 350 bits (898), Expect = 2.280e-112
Identity = 198/293 (67.58%), Postives = 204/293 (69.62%), Query Frame = 3 
Query:    3 ISTSKAKAESFVRVMHDEVKTGDWGFSVHQAKRW*TSTWSWRAEREEAGQDNRPFGDSSRSMDTSPLSRTLCTWHDIIPSRPRGGNKPQREPPGGYATISRGLLAAVHPAVSCQVRRVEGDMFPWCGVRFDTRTCEVMANYSRYSKAGVAESLTVDSRRAGACLVGKMKRFLSPKCHALMLDEGEHLGINSRNTVLLNVYEMLLVCAAKTATSALRLPRGPAGNASLLSNGALETTAYAYSLIQNRSNRRNGSFGTSRGVRCVCKANGR*T*RSLGNLEVLWLTGAAVVLHFG 881
            ISTSKAKAESFVRVMHDEVKTGDWGFSVHQAK                                     TL  +  ++ SR  GG  P R+P                  V  QVRRVEGDMFPWCGVRFDTRTCEVMANYSRYSK GVAESLTVDSRRAGACLVGKMKRFLSPKCHALMLDEGEHLGINSRNTVLLNVYEMLLVCAAKTATSALRLPRGPAGNASLLSNGALETTAYAYSLIQ+RSNRR GSFGTSRGVRCVCK +           EV WL   A    FG
Sbjct:  356 ISTSKAKAESFVRVMHDEVKTGDWGFSVHQAK-------------------------------------TLVNFDMVLESR-IGGGGPGRQP------------------VRRQVRRVEGDMFPWCGVRFDTRTCEVMANYSRYSKTGVAESLTVDSRRAGACLVGKMKRFLSPKCHALMLDEGEHLGINSRNTVLLNVYEMLLVCAAKTATSALRLPRGPAGNASLLSNGALETTAYAYSLIQSRSNRRKGSFGTSRGVRCVCKIH---------RFEVTWLGLHAFREVFG 583
[Close]
BLAST of Ec-00_000070.2 vs. uniprot
Match: D7FGU0_ECTSI (Telomerase reverse transcriptase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGU0_ECTSI)

HSP 1 Score: 332 bits (852), Expect = 2.700e-110
Identity = 188/279 (67.38%), Postives = 193/279 (69.18%), Query Frame = 3 
Query:   45 MHDEVKTGDWGFSVHQAKRW*TSTWSWRAEREEAGQDNRPFGDSSRSMDTSPLSRTLCTWHDIIPSRPRGGNKPQREPPGGYATISRGLLAAVHPAVSCQVRRVEGDMFPWCGVRFDTRTCEVMANYSRYSKAGVAESLTVDSRRAGACLVGKMKRFLSPKCHALMLDEGEHLGINSRNTVLLNVYEMLLVCAAKTATSALRLPRGPAGNASLLSNGALETTAYAYSLIQNRSNRRNGSFGTSRGVRCVCKANGR*T*RSLGNLEVLWLTGAAVVLHFG 881
            MHDEVKTGDWGFSVHQAK                                     TL  +  ++ SR  GG   Q                   P+V  QVRRVEGDMFPWCGVRFDTRTCEVMANYSRYSKAGVAESLTVDSRRAGACLVGKMKRFLSPKCHALMLDEGEHLGINSRNTVLLNVYEMLLVCAAKTATSALRLPRGPAGNASLLSNGALETTAYAYSLIQNRSNRRNGSFGTSRGVRCVCK +     RS    EV WL   A    FG
Sbjct:    1 MHDEVKTGDWGFSVHQAK-------------------------------------TLVNFDMVLESRKGGGGPGQ-------------------PSVRRQVRRVEGDMFPWCGVRFDTRTCEVMANYSRYSKAGVAESLTVDSRRAGACLVGKMKRFLSPKCHALMLDEGEHLGINSRNTVLLNVYEMLLVCAAKTATSALRLPRGPAGNASLLSNGALETTAYAYSLIQNRSNRRNGSFGTSRGVRCVCKIH-----RS----EVTWLGLHAFREVFG 214
[Close]
BLAST of Ec-00_000070.2 vs. uniprot
Match: D7G5Y0_ECTSI (Telomerase reverse transcriptase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y0_ECTSI)

HSP 1 Score: 241 bits (616), Expect = 1.460e-75
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 3 
Query:  432 YSKAGVAESLTVDSRRAGACLVGKMKRFLSPKCHALMLDEGEHLGINSRNTVLLNVYEMLLVCAAKTATSALRLPRGPAGNASLLSNGALETTAYAYSLIQNRSNRRNGSFGTSRGVRCVCK 797
            YSKAGVAESLTVDSRRAGACLVGKMKRFLSPKCHALMLDEGEHLGINSRNTVLLNVYEMLLVCAAKTATSALRLPRGPAGNASLLSNGALETTAYAYSLIQNRSNRRNGSFGTSRGVRCVCK
Sbjct:    7 YSKAGVAESLTVDSRRAGACLVGKMKRFLSPKCHALMLDEGEHLGINSRNTVLLNVYEMLLVCAAKTATSALRLPRGPAGNASLLSNGALETTAYAYSLIQNRSNRRNGSFGTSRGVRCVCK 128
[Close]
BLAST of Ec-00_000070.2 vs. uniprot
Match: UPI001CF1D80F (telomerase reverse transcriptase-like n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF1D80F)

HSP 1 Score: 75.9 bits (185), Expect = 2.830e-11
Identity = 50/144 (34.72%), Postives = 72/144 (50.00%), Query Frame = 3 
Query:  342 QVRRVE-GDMFPWCGVRFDTRTCEVMANYSRYSKAGVAESLTVD-SRRAGACLVGKMKRFLSPKCHALMLDEGEHLGINSRNTVLLNVYEMLLVCAAKTATSALRLPRG--PAGNASLLSNGALETTAYAYSLIQNRSNRRNGS 761
            QV+R+E  + FPWCG  FDT T EV  + SRY    + ++L+V      G  L  K+   + PKCH L+LD     G+NSR ++LL VY+  L+ A K    A   P G  P  N S      L+   Y ++    +  + + S
Sbjct: 1205 QVKRIEQNERFPWCGFLFDTVTLEVRCDISRYHGIQLRDTLSVSLDAHPGKALRRKLLCSVRPKCHPLLLDP----GLNSRESILLTVYQSFLLTAKKFCAYAKEFPLGGQPKDNPSFFCKLFLDLAQYFHATSSRKCRQLSSS 1344
[Close]
BLAST of Ec-00_000070.2 vs. uniprot
Match: L9LC90_TUPCH (Telomerase reverse transcriptase n=2 Tax=Tupaia chinensis TaxID=246437 RepID=L9LC90_TUPCH)

HSP 1 Score: 72.0 bits (175), Expect = 4.840e-10
Identity = 46/128 (35.94%), Postives = 69/128 (53.91%), Query Frame = 3 
Query:  369 FPWCGVRFDTRTCEVMANYSRYSKAGVAESLTVDSR-RAGACLVGKMKRFLSPKCHALMLDEGEHLGINSRNTVLLNVYEMLLVCAAKTATSALRLP--RGPAGNASLLSNGALETTAYAYSLIQNRS 743
            FPWCG+  DTR+ EV+ +YS Y++  +  SLT     +AG  L  K+   L  KCH + LD    L +NS  TV +NVY++LL+ A +     L+LP  +    N         +T +  YS+++ RS
Sbjct:  872 FPWCGLLLDTRSLEVLHDYSSYARTSIKASLTFSPGFQAGRALRRKLFGVLRLKCHGIFLD----LQVNSLQTVCVNVYKVLLLQAYRFHACVLQLPFDQQVHKNPPFFLRVISDTASLCYSILRARS 995
[Close]
BLAST of Ec-00_000070.2 vs. uniprot
Match: K8EYH3_9CHLO (Telomerase reverse transcriptase n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8EYH3_9CHLO)

HSP 1 Score: 70.5 bits (171), Expect = 1.660e-9
Identity = 37/93 (39.78%), Postives = 56/93 (60.22%), Query Frame = 3 
Query:  363 DMFPWCGVRFDTRTCEVMANYSRYSKAGVAESLTVDSRR-AGACLVGKMKRFLSPKCHALMLDEGEHLGINSRNTVLLNVYEMLLVCAAKTAT 638
            +  PWCG+ FDT+T EV A+YS+Y    + E++ + S   A   L  K + +L+ K  AL+ D      +NSR T+  N+Y+ LL+CAAKT +
Sbjct: 1327 EFIPWCGLLFDTQTLEVRADYSKYLNVWLRETINLPSSHLAWKYLSNKTRSYLNHKLCALLYDP----RVNSRETIATNMYQALLLCAAKTTS 1415
[Close]
BLAST of Ec-00_000070.2 vs. uniprot
Match: D7FKS8_ECTSI (Telomerase reverse transcriptase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKS8_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 2.330e-9
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 3 
Query:    3 ISTSKAKAESFVRVMHDEVKTGDWGFSVHQAK 98
            ISTSKAKAESFVRVMHDEVKTGDWGFSVHQAK
Sbjct:  280 ISTSKAKAESFVRVMHDEVKTGDWGFSVHQAK 311
[Close]
BLAST of Ec-00_000070.2 vs. uniprot
Match: A0A8B7PXA5_HIPAR (Telomerase reverse transcriptase n=2 Tax=Hipposideros armiger TaxID=186990 RepID=A0A8B7PXA5_HIPAR)

HSP 1 Score: 69.7 bits (169), Expect = 2.770e-9
Identity = 38/98 (38.78%), Postives = 57/98 (58.16%), Query Frame = 3 
Query:  366 MFPWCGVRFDTRTCEVMANYSRYSKAGVAESLTVDSR-RAGACLVGKMKRFLSPKCHALMLDEGEHLGINSRNTVLLNVYEMLLVCAAKTATSALRLP 656
            +FPWCG+  DTRT EV+ +YS Y++  +  SLT     +AG  +  K+ + L  KCH+L LD    L +NS   V  NV+++ L+ A +     L+LP
Sbjct:  921 LFPWCGLLLDTRTLEVLCDYSSYARTSIRASLTFSRGFKAGRSMRRKLFKVLRLKCHSLFLD----LQVNSLQMVCTNVHKIFLLQAYRFHACVLQLP 1014
[Close]
BLAST of Ec-00_000070.2 vs. uniprot
Match: A0A4Y9YKK0_9APHY (Telomerase reverse transcriptase n=1 Tax=Fomitopsis rosea TaxID=34475 RepID=A0A4Y9YKK0_9APHY)

HSP 1 Score: 69.3 bits (168), Expect = 3.700e-9
Identity = 43/126 (34.13%), Postives = 61/126 (48.41%), Query Frame = 3 
Query:  306 GLLAAVHPAVSCQVRR--------VEGDM---------FPWCGVRFDTRTCEVMANYSRYSKAGVAESLTVD-SRRAGACLVGKMKRFLSPKCHALMLDEGEHLGINSRNTVLLNVYEMLLVCAAK 629
            G++   HP   C + R         + DM         FPWCG   +     V A+Y+RY +  + +SLTV+  RR G   V KM +    K H L  D    +G+NSR+T+ LNVY+  L+ A K
Sbjct:  898 GMMVQGHPEYGCFISREKTLTNFDYDPDMNVTEPQQKSFPWCGYMINMTDLSVSADYTRYHETYLQDSLTVERGRRPGVTFVHKMMQLTKAKAHILFTD----VGLNSRHTIYLNVYQNFLLSAMK 1019
The following BLAST results are available for this feature:
BLAST of Ec-00_000070.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
D7G4G6_ECTSI1.660e-11272.56Telomerase reverse transcriptase n=1 Tax=Ectocarpu... [more]
A0A6H5K5W1_9PHAE2.280e-11267.58Telomerase reverse transcriptase n=1 Tax=Ectocarpu... [more]
D7FGU0_ECTSI2.700e-11067.38Telomerase reverse transcriptase n=1 Tax=Ectocarpu... [more]
D7G5Y0_ECTSI1.460e-75100.00Telomerase reverse transcriptase n=1 Tax=Ectocarpu... [more]
UPI001CF1D80F2.830e-1134.72telomerase reverse transcriptase-like n=1 Tax=Acro... [more]
L9LC90_TUPCH4.840e-1035.94Telomerase reverse transcriptase n=2 Tax=Tupaia ch... [more]
K8EYH3_9CHLO1.660e-939.78Telomerase reverse transcriptase n=1 Tax=Bathycocc... [more]
D7FKS8_ECTSI2.330e-9100.00Telomerase reverse transcriptase n=1 Tax=Ectocarpu... [more]
A0A8B7PXA5_HIPAR2.770e-938.78Telomerase reverse transcriptase n=2 Tax=Hipposide... [more]
A0A4Y9YKK0_9APHY3.700e-934.13Telomerase reverse transcriptase n=1 Tax=Fomitopsi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:54350..58521 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score313.9
Seed ortholog evalue5.6e-83
Seed eggNOG ortholog2880.D7G4G6
Preferred nameTERT
Length1047
KEGG koko:K10626,ko:K11126
KEGG Pathwayko05165,ko05166,ko05200,ko05225,ko05226,map05165,map05166,map05200,map05225,map05226
Hectar predicted targeting categoryother localisation
Gene idEc-00_000070.2
GOsGO:0000723,GO:0006139,GO:0006259,GO:0006278,GO:0006725,GO:0006807,GO:0006996,GO:0007004,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010833,GO:0016043,GO:0018130,GO:0019438,GO:0032200,GO:0034641,GO:0034645,GO:0034654,GO:0042592,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0046483,GO:0051276,GO:0060249,GO:0065007,GO:0065008,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:1901360,GO:1901362,GO:1901576
EggNOG free text desc.telomerase RNA reverse transcriptase activity
EggNOG OGsKOG1005@1,KOG1005@2759
EC2.3.2.27,2.7.7.49
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000070Ec-00_000070Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 54350..60308 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000070.2Ec-00_000070.2Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 55428..58289 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000070.2.1Ec-00_000070.2.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 54350..54448 +
Ec-00_000070.2.2Ec-00_000070.2.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 54970..55047 +
Ec-00_000070.2.3Ec-00_000070.2.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 55417..55672 +
Ec-00_000070.2.4Ec-00_000070.2.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 56306..56473 +
Ec-00_000070.2.5Ec-00_000070.2.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 57344..57542 +
Ec-00_000070.2.6Ec-00_000070.2.6Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 58275..58521 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0000705UTR:Ec-00_000070.2Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 54350..54448 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000070.2CDS:Ec-00_000070.2Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 55428..55672 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0000703UTR:Ec-00_000070.2Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 58290..58521 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_000070.2 ID=Ec-00_000070.2|Name=Ec-00_000070.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=209bp
MDTSPLSRTLCTWHDIIPSRPRGGNKPQREPPGGYATISRGLLAAVHPAV
SCQVRRVEGDMFPWCGVRFDTRTCEVMANYSRYSKAGVAESLTVDSRRAG
ACLVGKMKRFLSPKCHALMLDEGEHLGINSRNTVLLNVYEMLLVCAAKTA
TSALRLPRGPAGNASLLSNGALETTAYAYSLIQNRSNRRNGSFGTSRGVR
CVCKANGR*
back to top

spliced messenger RNA

>Ec-00_000070.2 ID=Ec-00_000070.2|Name=Ec-00_000070.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1047bp|location=Sequence derived from alignment at chr_00:54350..58521+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
CAGATCTCTACGAGCAAGGCTAAGGCCGAGTCCTTCGTAAGGGTGATGCA
CGACGAGGTCAAGACGGGAGACTGGGGCTTTAGTGTGCACCAAGCGAAGA
CGCTGGTAAACTTCGACATGGTCTTGGAGAGCAGAAAGGGAGGAGGCGGG
CCAGGACAACCGTCCGTTCGGAGACAGTTTCGCGTTCGATGGATACATCC
CCTCTCAGCCGTACGCTGTGTACATGGCACGATATCATTCCGTCGAGGCC
CCGCGGAGGAAACAAACCACAACGTGAACCACCAGGGGGGTACGCGACAA
TCTCCCGCGGTCTGTTGGCTGCGGTTCACCCTGCCGTCTCGTGTCAGGTA
CGACGGGTCGAAGGCGACATGTTCCCCTGGTGCGGCGTGCGCTTCGACAC
CCGAACGTGCGAAGTCATGGCCAACTACTCCAGGTACTCGAAGGCCGGGG
TGGCGGAGTCGTTGACGGTGGACTCGAGGCGCGCCGGCGCGTGCCTGGTG
GGCAAGATGAAGCGGTTCCTGTCGCCCAAGTGCCACGCCCTCATGCTCGA
CGAGGGGGAGCACCTCGGGATCAACTCCAGGAACACCGTGCTGCTCAACG
TGTACGAGATGCTGTTGGTGTGTGCGGCCAAAACGGCCACTTCCGCTCTC
CGTTTGCCTCGTGGTCCCGCTGGCAACGCCTCCTTGCTGTCGAACGGTGC
TCTCGAGACGACGGCCTACGCCTACAGCCTGATCCAGAACCGCTCCAACA
GGCGCAACGGGAGTTTTGGCACCTCCAGAGGAGTGCGGTGCGTCTGCAAG
GCAAATGGACGGTGAAACCTGACGATCACTCGGAAATCTGGAAGTACTGT
GGCTCACAGGAGCCGCGGTGGTCCTCCATTTCGGTCCCCAAAGATGCAAC
AGTCTTGGGAAGGGAAACTGATCGCATCCCGAGGTTGGGATAAATACCCT
GGTCCGGGTGAAAACCCGGTGTGCTTCGTCCCGGCTTTGTAAGGATGCGA
CGTCAATGGCCTAACGACTACAGCATGCACGAGAATGAGTAACCCCC
back to top

protein sequence of Ec-00_000070.2

>Ec-00_000070.2 ID=Ec-00_000070.2|Name=Ec-00_000070.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=209bp
MDTSPLSRTLCTWHDIIPSRPRGGNKPQREPPGGYATISRGLLAAVHPAV
SCQVRRVEGDMFPWCGVRFDTRTCEVMANYSRYSKAGVAESLTVDSRRAG
ACLVGKMKRFLSPKCHALMLDEGEHLGINSRNTVLLNVYEMLLVCAAKTA
TSALRLPRGPAGNASLLSNGALETTAYAYSLIQNRSNRRNGSFGTSRGVR
CVCKANGR*
back to top

mRNA from alignment at chr_00:54350..58521+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_000070.2 ID=Ec-00_000070.2|Name=Ec-00_000070.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=4172bp|location=Sequence derived from alignment at chr_00:54350..58521+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
CAGATCTCTACGAGCAAGGCTAAGGCCGAGTCCTTCGTAAGGGTGATGCA
CGACGAGGTCAAGACGGGAGACTGGGGCTTTAGTGTGCACCAAGCGAAGG
TGACGCGATGAGCCCCCTGTCCGGTTGACTTGAGGATCATTCTCTCCAGT
TTATATTTATACCACGTGTCTAAACTTAGACAGGAGTTCGCGCGCTTTTG
AAAATTGTCGGCGAGGGTTGTGGTTGTCGTCGTCGTTGATGCTGCTGTTG
TCCCCATATTGATGAACGCTTTGATCCCTAAGCAGTACCCTCCTCTGCCG
CACTACCCTAACCGGTAGAGAAAGATACAGTAAATTCACATCTCGCGTAG
ATGGAAGAAGATATTAAGGTTCTTCCTTAGCTAACCTGGTTTAAGTCCGT
AGGTGTTATTGGGTCCAGGTGGCCGGAAGTGGCCGGAAGTTCTTTTTTGT
TTCCCATAGGGGAAATCGACACAATGGGGCACGCCCCGGGTATTTTCGTA
TTTTCGGAACCAAGTGGGGTATGACTTTTTTCGGTGCGGGGCGCATCACC
TGACACCCGGTAAGCACCTCATTGTTTTTTGTTTAAAGTTCTTTTATTTT
CCTCGTCATCGCCTGTCCAGACGCTGGTAAACTTCGACATGGTCTTGGAG
AGCAGAAAGGGAGGAGGCGGGCCAGGACAACCGTCCGTTCGGAGACAGGT
GGATGCTTCAGTTTAGGCTGGTCGCCTTTGAATAGTAGACGCGAAGCCCA
GAACCAGCGCTGCTTTGTTGAGAGAGAAAGTGGAAAGTGCGCGGCATTAT
TTGTACCCTACGAAGTGCCAGCATTGCGAGTCCAACGAGAAACACGTTCC
TGTTTCAGATTACTCTCCCTACATGCGTATCCCGCTGCAAGTGCCACTAT
ATTTTTTGTATGTTTTGCTGGGTTTGGTGCCACTATTTTTTGTTTATTTT
GCTGGGGTTATGTCTCCAAGCCCGATGTCACGCTGACCAGCAATGTTGAG
CTGGCGACGATTTCGTTCCATTGCTGTCTTGTGACTTGCACACACGCGCG
CATCGACGGCGTGGCAGTTTCGCGTTCGATGGATACATCCCCTCTCAGCC
GTACGCTGTGTACATGGCACGATATCATTCCGTCGAGGCCCCGCGGAGGA
AACAAACCACAACGTGAACCACCAGGGGGGTACGCGACAATCTCCCGCGG
TCTGTTGGCTGCGGTTCACCCTGCCGTCTCGTGTCAGGTACGACGGGTCG
AAGGCGACATGTTCCCCTGGTGCGGCGTGCGCTTCGACACCCGAACGTGC
GAAGTCATGGCCAACTACTCCAGGTACACAGCAGTGCACACGCCACGGCT
TGTTCCGGAGGCCGCCAACGCTGGCCGGAAGAACGTGATCACAGCCGAGT
TGGCTAGATTCATTTTGACTGCTCTCTTGCAATACAATGGGGGTTCCTGT
TTAGTGACGGTTGAATAGCGTCAATGCCCGGGATACTGGCGTTGTTGTCG
GCGGGCAAACACTGAATTTCTAAGTCATTGTCAGTACTTTGGAACAGTGC
CGGTCCGGTATAGTGCGGGTAAATCTTCTGGACACATGTGTACCGGCACA
GTAAACAGGGACCCTAACTGCAGGCGCATTTGCGGCGTTGTAACCGCGAA
AGAGCAAGCCTCTCATTCAAAGGGAGGGTTACCGCCTTGTGGAAGGTTCG
CCGGCACACTCGAAGGAGAAGTAGGGTTTCATCCACCTCTCCCTTGTGAT
GTGATAGGCCCATCGCGCACAAAATTTTCATGGGACAGAGCTAAACACAG
CCTCGAAGCCACTGTTGAAGCGGTGAAAGACATACAAGCCGTCGCTGATT
TGTTCTGGGTGTTGCGCTGATGTTGGTACTACGAATGCTGGTATCACCCG
CTCTCCCGCCATCGCCCACCGCGACCGTTGACATCGCCACCCGCCCCGTC
GTCCAGGTACTCGAAGGCCGGGGTGGCGGAGTCGTTGACGGTGGACTCGA
GGCGCGCCGGCGCGTGCCTGGTGGGCAAGATGAAGCGGTTCCTGTCGCCC
AAGTGCCACGCCCTCATGCTCGACGAGGGGGAGCACCTCGGGATCAACTC
CAGGAACACCGTGCTGCTCAACGTGTGAGTTTTGTTCCTGCTCGCCAGAC
CGCATTTCGCCTTTTTCTGGAAAACACACGCGCCGTGTTATTTTTGTGCG
TTGGAGCACAATTCTACTTGTTCGCATGCGTGTTTTGGCCGCCGCTGCTG
CTGAGCTACGCCTCTTGTCGTAATCGAGGACACCAATGTTTACTTTCGAA
GTGGATCGTGCTACGTGATTGCGTGCTTTTGGAGGGAGGGTCAGCTTGTG
GGTCTTGGGTGCAACATCCTACACTTGCGCTACATTGCTGTAGCGGTGGA
TTTCTCGTCTCGCCCGGCCATTGAACACACCGCATCCCACCGTGCCTTGA
GATGAACATTTTGTTCTGCCCACAAGGCGTTGACAAGCCAACCCTAACCC
CTGAAAAACACCGCGCCCTCTCAATTTCTGAGGCGGCAGCTGTGATTTCA
CGCTTGAGACGAAAGGTTCGCAAACGAAACGTACGTGCACGGTTTTTGGC
AGACGGACTTATGTACCTCCATGTACGCGCCGAACTTATGCTTCCTTCAA
GGTTCACTTTCAGCGTTTGTAATGAACAGATTACCCCTTCAGGGCACCCC
ACCTTGGCGTCAGAAAGCGATGTAAAGTCGGTTGATAATGCGATTTGGCC
AAGGTCTACCTACGTGTGAAACAGGAACACCACTGTGTTCAAGCTTTCTC
GGAGTGGTCACGGGGTCGTTAGGCAGGCAGTCCATGCTCCGCGAACTGGC
GATGTGCTTTTGTCATGATTCTTCGACTACCGCTTGTTGATATCATTCTA
CGAAGGTTCCGGTCCACTCTTTACGTGGGAGCTATGAACCATCGTTGGGT
TCCTCCAATTTGCGGTGTGACGGTCCACTTTGTTTTTGTTTCAGGTACGA
GATGCTGTTGGTGTGTGCGGCCAAAACGGCCACTTCCGCTCTCCGTTTGC
CTCGTGGTCCCGCTGGCAACGCCTCCTTGCTGTCGAACGGTGCTCTCGAG
ACGACGGCCTACGCCTACAGCCTGATCCAGAACCGCTCCAACAGGCGCAA
CGGGAGTTTTGGCACCTCCAGAGGAGTGCGGTGCGTCTGCAAGGTGCGAG
CAACGTTGACTTAGCGCGTGCCGACATAGCAGTCATGAGAAGGGGAGATG
GAGGGAAGAGGGAGGGAAGAGAGAGGAAGGGAGGGAGCGAGAGATAGATA
CAGAGATACAGAGATACAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCACA
GACAGACAGAGAACGAGGGATGGAGAGATGTAAAACCCCGGGAACTTTTC
TTTGTACACCGGATTGCAACACGAAGAACCGAATCCTTCGGAACCTATTG
CGAGTGCCATCCCCAGCAGTAGTAGGAGGACCGGGCGTCCCAAGGTTCCG
GAAGTTGTCCAACCAGTTGATGTAGGTTCTACGTTGTACTTGGGACATTT
TTGACCTATGGAGCAGACGGAGACAACGTGCATGTAGGCCAGCAGACCAA
AGCAGACTGGATGTGGTAGGGGTGTTGGTGGATGTTTTTGTGGGGGCCCC
GTAGGATGCACCGAAAACGAACGGCGCGATTGGTTGTTATTGTCGGCGGC
AGGCACATTCTGCGTCGGCGGCTTCCCGTGGGCTTAAGGCGATGCCCAAG
AAACGTTTTTGTGCTTTTTGGTGCAGCGCCGAAGCGCTGACTACTTCCCC
CCTCCCTCACCCCCGATATTTCGATGTTCTCCTGCTCAGCTTTGCATGCA
TCCCAAGTCCGTGGCTGTGGTCAACAACCTACAGGATGAACACTCATGAG
CACCCACTCCCGCCTTCTATGATAGGCAAATGGACGGTGAAACCTGACGA
TCACTCGGAAATCTGGAAGTACTGTGGCTCACAGGAGCCGCGGTGGTCCT
CCATTTCGGTCCCCAAAGATGCAACAGTCTTGGGAAGGGAAACTGATCGC
ATCCCGAGGTTGGGATAAATACCCTGGTCCGGGTGAAAACCCGGTGTGCT
TCGTCCCGGCTTTGTAAGGATGCGACGTCAATGGCCTAACGACTACAGCA
TGCACGAGAATGAGTAACCCCC
back to top

Coding sequence (CDS) from alignment at chr_00:54350..58521+

>Ec-00_000070.2 ID=Ec-00_000070.2|Name=Ec-00_000070.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=627bp|location=Sequence derived from alignment at chr_00:54350..58521+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGATACATCCCCTCTCAGCCGTACGCTGTGTACATGGCACGATATCAT
TCCGTCGAGGCCCCGCGGAGGAAACAAACCACAACGTGAACCACCAGGGG
GGTACGCGACAATCTCCCGCGGTCTGTTGGCTGCGGTTCACCCTGCCGTC
TCGTGTCAGGTACGACGGGTCGAAGGCGACATGTTCCCCTGGTGCGGCGT
GCGCTTCGACACCCGAACGTGCGAAGTCATGGCCAACTACTCCAGGTACT
CGAAGGCCGGGGTGGCGGAGTCGTTGACGGTGGACTCGAGGCGCGCCGGC
GCGTGCCTGGTGGGCAAGATGAAGCGGTTCCTGTCGCCCAAGTGCCACGC
CCTCATGCTCGACGAGGGGGAGCACCTCGGGATCAACTCCAGGAACACCG
TGCTGCTCAACGTGTACGAGATGCTGTTGGTGTGTGCGGCCAAAACGGCC
ACTTCCGCTCTCCGTTTGCCTCGTGGTCCCGCTGGCAACGCCTCCTTGCT
GTCGAACGGTGCTCTCGAGACGACGGCCTACGCCTACAGCCTGATCCAGA
ACCGCTCCAACAGGCGCAACGGGAGTTTTGGCACCTCCAGAGGAGTGCGG
TGCGTCTGCAAGGCAAATGGACGGTGA
back to top
Synonyms
The feature 'Ec-00_000070.2' has the following synonyms
Synonym
Esi1010_0001
Esi_1010_0001