Ec-00_000070.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_000070.1
Unique NameEc-00_000070.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length304
Homology
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BLAST of Ec-00_000070.1 vs. uniprot
Match: D7FGU0_ECTSI (Telomerase reverse transcriptase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGU0_ECTSI)

HSP 1 Score: 608 bits (1567), Expect = 1.670e-219
Identity = 303/303 (100.00%), Postives = 303/303 (100.00%), Query Frame = 1 
Query:    1 MHDEVKTGDWGFSVHQAKTLVNFDMVLESRKGGGGPGQPSVRRQVRRVEGDMFPWCGVRFDTRTCEVMANYSRYSKAGVAESLTVDSRRAGACLVGKMKRFLSPKCHALMLDEGEHLGINSRNTVLLNVYEMLLVCAAKTATSALRLPRGPAGNASLLSNGALETTAYAYSLIQNRSNRRNGSFGTSRGVRCVCKIHRSEVTWLGLHAFREVFGAFAMKDRGFARCKLDVERALRETAGSRGGGFEGFSRKIRKGKEGAAAAGCEEGATSDTQHGVRRGRAYGRLRRVVRSPDALSLLQTLTS 909
            MHDEVKTGDWGFSVHQAKTLVNFDMVLESRKGGGGPGQPSVRRQVRRVEGDMFPWCGVRFDTRTCEVMANYSRYSKAGVAESLTVDSRRAGACLVGKMKRFLSPKCHALMLDEGEHLGINSRNTVLLNVYEMLLVCAAKTATSALRLPRGPAGNASLLSNGALETTAYAYSLIQNRSNRRNGSFGTSRGVRCVCKIHRSEVTWLGLHAFREVFGAFAMKDRGFARCKLDVERALRETAGSRGGGFEGFSRKIRKGKEGAAAAGCEEGATSDTQHGVRRGRAYGRLRRVVRSPDALSLLQTLTS
Sbjct:    1 MHDEVKTGDWGFSVHQAKTLVNFDMVLESRKGGGGPGQPSVRRQVRRVEGDMFPWCGVRFDTRTCEVMANYSRYSKAGVAESLTVDSRRAGACLVGKMKRFLSPKCHALMLDEGEHLGINSRNTVLLNVYEMLLVCAAKTATSALRLPRGPAGNASLLSNGALETTAYAYSLIQNRSNRRNGSFGTSRGVRCVCKIHRSEVTWLGLHAFREVFGAFAMKDRGFARCKLDVERALRETAGSRGGGFEGFSRKIRKGKEGAAAAGCEEGATSDTQHGVRRGRAYGRLRRVVRSPDALSLLQTLTS 303
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BLAST of Ec-00_000070.1 vs. uniprot
Match: D7G4G6_ECTSI (Telomerase reverse transcriptase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4G6_ECTSI)

HSP 1 Score: 591 bits (1523), Expect = 2.340e-204
Identity = 294/303 (97.03%), Postives = 299/303 (98.68%), Query Frame = 1 
Query:    1 MHDEVKTGDWGFSVHQAKTLVNFDMVLESRKGGGGPGQPSVRRQVRRVEGDMFPWCGVRFDTRTCEVMANYSRYSKAGVAESLTVDSRRAGACLVGKMKRFLSPKCHALMLDEGEHLGINSRNTVLLNVYEMLLVCAAKTATSALRLPRGPAGNASLLSNGALETTAYAYSLIQNRSNRRNGSFGTSRGVRCVCKIHRSEVTWLGLHAFREVFGAFAMKDRGFARCKLDVERALRETAGSRGGGFEGFSRKIRKGKEGAAAAGCEEGATSDTQHGVRRGRAYGRLRRVVRSPDALSLLQTLTS 909
            MHDEVKTGDWGFSVHQAKTLVNFDMVLESRKGGGGPGQP VRRQVRRVEGDMFPWCGVRFDTRTCEVMANYSRYSKAGVAESLTVDSRRAGACLVGKMKRFLSPKCHALMLDEGEHLGINSRNTVLLNVYEMLLVCAAKTATSALRLPRG AGNASLLSNGALETTAYAYSLIQ+RSNRR GSFGTSRGVRCVCKIHR EVTWLGLHAFREVFGAFAMKDRGFARCKLDVERALRETAGSRGGGFEGFSRK+R+GKEGAAAAGCEEGATSDTQHGVRRGRA+GRL+RVVRSPDALSLLQTLTS
Sbjct:  569 MHDEVKTGDWGFSVHQAKTLVNFDMVLESRKGGGGPGQPPVRRQVRRVEGDMFPWCGVRFDTRTCEVMANYSRYSKAGVAESLTVDSRRAGACLVGKMKRFLSPKCHALMLDEGEHLGINSRNTVLLNVYEMLLVCAAKTATSALRLPRGAAGNASLLSNGALETTAYAYSLIQSRSNRRKGSFGTSRGVRCVCKIHRFEVTWLGLHAFREVFGAFAMKDRGFARCKLDVERALRETAGSRGGGFEGFSRKVRQGKEGAAAAGCEEGATSDTQHGVRRGRAHGRLQRVVRSPDALSLLQTLTS 871
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BLAST of Ec-00_000070.1 vs. uniprot
Match: A0A6H5K5W1_9PHAE (Telomerase reverse transcriptase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5W1_9PHAE)

HSP 1 Score: 568 bits (1464), Expect = 3.610e-198
Identity = 286/303 (94.39%), Postives = 290/303 (95.71%), Query Frame = 1 
Query:    1 MHDEVKTGDWGFSVHQAKTLVNFDMVLESRKGGGGPGQPSVRRQVRRVEGDMFPWCGVRFDTRTCEVMANYSRYSKAGVAESLTVDSRRAGACLVGKMKRFLSPKCHALMLDEGEHLGINSRNTVLLNVYEMLLVCAAKTATSALRLPRGPAGNASLLSNGALETTAYAYSLIQNRSNRRNGSFGTSRGVRCVCKIHRSEVTWLGLHAFREVFGAFAMKDRGFARCKLDVERALRETAGSRGGGFEGFSRKIRKGKEGAAAAGCEEGATSDTQHGVRRGRAYGRLRRVVRSPDALSLLQTLTS 909
            MHDEVKTGDWGFSVHQAKTLVNFDMVLESR GGGGPG+  VRRQVRRVEGDMFPWCGVRFDTRTCEVMANYSRYSK GVAESLTVDSRRAGACLVGKMKRFLSPKCHALMLDEGEHLGINSRNTVLLNVYEMLLVCAAKTATSALRLPRGPAGNASLLSNGALETTAYAYSLIQ+RSNRR GSFGTSRGVRCVCKIHR EVTWLGLHAFREVFGAFA KDRGFARCKLDVERALRETAG  GGGF+GFSRK+ KGKEGAAAAG E GAT DTQHGVRRGRAYGRLRRVVRSPDALSLLQTLTS
Sbjct:  370 MHDEVKTGDWGFSVHQAKTLVNFDMVLESRIGGGGPGRQPVRRQVRRVEGDMFPWCGVRFDTRTCEVMANYSRYSKTGVAESLTVDSRRAGACLVGKMKRFLSPKCHALMLDEGEHLGINSRNTVLLNVYEMLLVCAAKTATSALRLPRGPAGNASLLSNGALETTAYAYSLIQSRSNRRKGSFGTSRGVRCVCKIHRFEVTWLGLHAFREVFGAFARKDRGFARCKLDVERALRETAGFWGGGFDGFSRKMCKGKEGAAAAGWEGGATPDTQHGVRRGRAYGRLRRVVRSPDALSLLQTLTS 672
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BLAST of Ec-00_000070.1 vs. uniprot
Match: D7G5Y0_ECTSI (Telomerase reverse transcriptase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y0_ECTSI)

HSP 1 Score: 423 bits (1087), Expect = 1.920e-147
Identity = 219/230 (95.22%), Postives = 221/230 (96.09%), Query Frame = 1 
Query:  220 YSKAGVAESLTVDSRRAGACLVGKMKRFLSPKCHALMLDEGEHLGINSRNTVLLNVYEMLLVCAAKTATSALRLPRGPAGNASLLSNGALETTAYAYSLIQNRSNRRNGSFGTSRGVRCVCKIHRSEVTWLGLHAFREVFGAFAMKDRGFARCKLDVERALRETAGSRGGGFEGFSRKIRKGKEGAAAAGCEEGATSDTQHGVRRGRAYGRLRRVVRSPDALSLLQTLTS 909
            YSKAGVAESLTVDSRRAGACLVGKMKRFLSPKCHALMLDEGEHLGINSRNTVLLNVYEMLLVCAAKTATSALRLPRGPAGNASLLSNGALETTAYAYSLIQNRSNRRNGSFGTSRGVRCVCK HR +VTW+GL AFREVFGAF MKDRGFARCKL VE ALRETAGSRGGGFEGFSRKIRKGKEGAAAAG EE AT DTQHGVRRGRAYGRLRRVVRSPDALSLLQTLTS
Sbjct:    7 YSKAGVAESLTVDSRRAGACLVGKMKRFLSPKCHALMLDEGEHLGINSRNTVLLNVYEMLLVCAAKTATSALRLPRGPAGNASLLSNGALETTAYAYSLIQNRSNRRNGSFGTSRGVRCVCKNHRFQVTWVGLPAFREVFGAFPMKDRGFARCKLHVESALRETAGSRGGGFEGFSRKIRKGKEGAAAAGWEEEATPDTQHGVRRGRAYGRLRRVVRSPDALSLLQTLTS 236
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BLAST of Ec-00_000070.1 vs. uniprot
Match: UPI001CF1D80F (telomerase reverse transcriptase-like n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF1D80F)

HSP 1 Score: 103 bits (256), Expect = 1.360e-20
Identity = 69/206 (33.50%), Postives = 101/206 (49.03%), Query Frame = 1 
Query:   25 DWGFSVHQAKTLVNFDMVLESRKGGGGPGQPSVRRQVRRVE-GDMFPWCGVRFDTRTCEVMANYSRYSKAGVAESLTVD-SRRAGACLVGKMKRFLSPKCHALMLDEGEHLGINSRNTVLLNVYEMLLVCAAKTATSALRLPRG--PAGNASLLSNGALETTAYAYSLIQNRSNRRNGSFGTSRGVRCVCKIHRSEVTWLGLHAFR 630
            ++G  ++Q KTL+NFD V  + K            QV+R+E  + FPWCG  FDT T EV  + SRY    + ++L+V      G  L  K+   + PKCH L+LD     G+NSR ++LL VY+  L+ A K    A   P G  P  N S      L+   Y ++    +  + + S       +    ++  EVTWL LHAF+
Sbjct: 1182 EYGCRINQNKTLINFDAVAPNGK------------QVKRIEQNERFPWCGFLFDTVTLEVRCDISRYHGIQLRDTLSVSLDAHPGKALRRKLLCSVRPKCHPLLLDP----GLNSRESILLTVYQSFLLTAKKFCAYAKEFPLGGQPKDNPSFFCKLFLDLAQYFHATSSRKCRQLSSS-------KASFSLNEGEVTWLCLHAFK 1364
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BLAST of Ec-00_000070.1 vs. uniprot
Match: A0A4Y9YKK0_9APHY (Telomerase reverse transcriptase n=1 Tax=Fomitopsis rosea TaxID=34475 RepID=A0A4Y9YKK0_9APHY)

HSP 1 Score: 91.3 bits (225), Expect = 1.380e-16
Identity = 61/205 (29.76%), Postives = 94/205 (45.85%), Query Frame = 1 
Query:   25 DWGFSVHQAKTLVNFDMVLESRKGGGGPGQPSVRRQVRRVEGDMFPWCGVRFDTRTCEVMANYSRYSKAGVAESLTVD-SRRAGACLVGKMKRFLSPKCHALMLDEGEHLGINSRNTVLLNVYEMLLVCAAKTATSALRLPRGPAGNASLLSNGALETTAYAYSLIQNRSNRRNGSFGTSRGVRCVCKIHRSEVTWLGLHAFREV 636
            ++G  + + KTL NFD              P +   V   +   FPWCG   +     V A+Y+RY +  + +SLTV+  RR G   V KM +    K H L  D    +G+NSR+T+ LNVY+  L+ A K      +       N   L +   +   Y ++ ++N+S+ +       R     C +H+ +V WLG HAF  V
Sbjct:  906 EYGCFISREKTLTNFDY------------DPDMN--VTEPQQKSFPWCGYMINMTDLSVSADYTRYHETYLQDSLTVERGRRPGVTFVHKMMQLTKAKAHILFTD----VGLNSRHTIYLNVYQNFLLSAMKMHHYLRQWGLNVKKNHVFLRSTIQQMIRYTFATMRNKSSNKVAKRSGGR-----CDVHQDQVIWLGTHAFYTV 1087
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BLAST of Ec-00_000070.1 vs. uniprot
Match: A0A8B7PXA5_HIPAR (Telomerase reverse transcriptase n=2 Tax=Hipposideros armiger TaxID=186990 RepID=A0A8B7PXA5_HIPAR)

HSP 1 Score: 84.0 bits (206), Expect = 3.880e-14
Identity = 67/209 (32.06%), Postives = 102/209 (48.80%), Query Frame = 1 
Query:   25 DWGFSVHQAKTLVNFDMVLESRKGGGGPGQPSVRRQVRRVEGDMFPWCGVRFDTRTCEVMANYSRYSKAGVAESLTVDSR-RAGACLVGKMKRFLSPKCHALMLDEGEHLGINSRNTVLLNVYEMLLVCAAKTATSALRLP------RGPAGNASLLSNGALETTAYAYSLIQNRSNRRNGSFGTSRGVRCVCKIHRSE-VTWLGLHAF 627
            ++G   +  KT+VNF  V +   GG GP Q             +FPWCG+  DTRT EV+ +YS Y++  +  SLT     +AG  +  K+ + L  KCH+L LD    L +NS   V  NV+++ L+ A +     L+LP      + PA    ++S    +T +  Y+L++ ++       G   G +       SE V WL LHAF
Sbjct:  887 EYGCVANLRKTVVNFP-VEDGAPGGEGPLQLPAHC--------LFPWCGLLLDTRTLEVLCDYSSYARTSIRASLTFSRGFKAGRSMRRKLFKVLRLKCHSLFLD----LQVNSLQMVCTNVHKIFLLQAYRFHACVLQLPFNQQVRKNPAFFLRVIS----DTASRCYALLKAKNT------GMLLGAKGAAGPFPSEAVKWLCLHAF 1072
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BLAST of Ec-00_000070.1 vs. uniprot
Match: L9LC90_TUPCH (Telomerase reverse transcriptase n=2 Tax=Tupaia chinensis TaxID=246437 RepID=L9LC90_TUPCH)

HSP 1 Score: 81.3 bits (199), Expect = 3.030e-13
Identity = 66/204 (32.35%), Postives = 101/204 (49.51%), Query Frame = 1 
Query:   25 DWGFSVHQAKTLVNFDMVLESRKGGGGPGQPSVRRQVRRVEGDMFPWCGVRFDTRTCEVMANYSRYSKAGVAESLTVDSR-RAGACLVGKMKRFLSPKCHALMLDEGEHLGINSRNTVLLNVYEMLLVCAAKTATSALRLP--RGPAGNASLLSNGALETTAYAYSLIQNRSNRRNGSFGTSRGVRCVCKIHRSEVTWLGLHAF 627
            ++G  ++  KT+VNF   ++   GG      +VR+         FPWCG+  DTR+ EV+ +YS Y++  +  SLT     +AG  L  K+   L  KCH + LD    L +NS  TV +NVY++LL+ A +     L+LP  +    N         +T +  YS+++ RS     + GT RG         +E  WL +HAF
Sbjct:  838 EYGCLINLGKTVVNFP--VDDSLGGS-----AVRQLPAHCR---FPWCGLLLDTRSLEVLHDYSSYARTSIKASLTFSPGFQAGRALRRKLFGVLRLKCHGIFLD----LQVNSLQTVCVNVYKVLLLQAYRFHACVLQLPFDQQVHKNPPFFLRVISDTASLCYSILRARS--AGVTLGT-RGAGGPFPFEAAE--WLCVHAF 1022
[Close]
BLAST of Ec-00_000070.1 vs. uniprot
Match: A0A0C9Z1F6_9AGAM (Telomerase reverse transcriptase n=1 Tax=Pisolithus microcarpus 441 TaxID=765257 RepID=A0A0C9Z1F6_9AGAM)

HSP 1 Score: 79.3 bits (194), Expect = 1.350e-12
Identity = 67/261 (25.67%), Postives = 110/261 (42.15%), Query Frame = 1 
Query:   25 DWGFSVHQAKTLVNFDMVLESRKGGGGPGQPSVRRQVRRVEGDMFPWCGVRFDTRTCEVMANYSRYSKAGVAESLTVDS-RRAGACLVGKMKRFLSPKCHALMLDEGEHLGINSRNTVLLNVYEMLLVCAAKTATSALRLPRGPAGNASLLSNGALETTAYAYSLIQNRSNRRNGSFGTSRGVRCVCKIHRSEVTW--------------LGLHAFREVFGAFAMKDRGFARCKLDVERALRETAGSRGGGFEGFSRKIRK 762
            ++G  + + KT+ NFD   E                V       FPWCG+  + +   VMA+Y RY+   + +SLTV+  RR GA  V KM +    + H +  D    + +N   TV  N+Y+ LL+ AAK            A N + ++N   +   Y+++ I  ++         + G RC   + R  V W              LG HAF   +  F+ + + +  C L ++    E +  +G G +   RK+ K
Sbjct:  923 EYGCMISREKTMTNFDYDTEIMN-------------VTSPTQTYFPWCGLLINMKDLSVMADYGRYNSTNLRDSLTVEKGRRQGAAFVHKMLQAAKSRSHIIFTD----VVLNDAYTVYRNIYQSLLITAAKMDYYIESWGIDIAKNETFINNTIRQVIRYSHASILRKA---RNEVAKANGARC--NVQRVLVNWYVRSLDPAFRSRFGLGTHAF---YAIFSKRPQRYGTCLL-LQHLESELSLPKGRGIQRRFRKLVK 1157
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BLAST of Ec-00_000070.1 vs. uniprot
Match: K8EYH3_9CHLO (Telomerase reverse transcriptase n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8EYH3_9CHLO)

HSP 1 Score: 79.3 bits (194), Expect = 1.430e-12
Identity = 45/136 (33.09%), Postives = 74/136 (54.41%), Query Frame = 1 
Query:   25 DWGFSVHQAKTLVNFDMVLESRKGGGGPGQPSVRRQVRRVEG-DMFPWCGVRFDTRTCEVMANYSRYSKAGVAESLTVDSRR-AGACLVGKMKRFLSPKCHALMLDEGEHLGINSRNTVLLNVYEMLLVCAAKTAT 426
            ++G  ++  KT +NFD +           +  + + V   +G +  PWCG+ FDT+T EV A+YS+Y    + E++ + S   A   L  K + +L+ K  AL+ D      +NSR T+  N+Y+ LL+CAAKT +
Sbjct: 1295 EYGVEINPTKTKINFDHL-----------ERKLEKNVECKDGCEFIPWCGLLFDTQTLEVRADYSKYLNVWLRETINLPSSHLAWKYLSNKTRSYLNHKLCALLYDP----RVNSRETIATNMYQALLLCAAKTTS 1415
The following BLAST results are available for this feature:
BLAST of Ec-00_000070.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
D7FGU0_ECTSI1.670e-219100.00Telomerase reverse transcriptase n=1 Tax=Ectocarpu... [more]
D7G4G6_ECTSI2.340e-20497.03Telomerase reverse transcriptase n=1 Tax=Ectocarpu... [more]
A0A6H5K5W1_9PHAE3.610e-19894.39Telomerase reverse transcriptase n=1 Tax=Ectocarpu... [more]
D7G5Y0_ECTSI1.920e-14795.22Telomerase reverse transcriptase n=1 Tax=Ectocarpu... [more]
UPI001CF1D80F1.360e-2033.50telomerase reverse transcriptase-like n=1 Tax=Acro... [more]
A0A4Y9YKK0_9APHY1.380e-1629.76Telomerase reverse transcriptase n=1 Tax=Fomitopsi... [more]
A0A8B7PXA5_HIPAR3.880e-1432.06Telomerase reverse transcriptase n=2 Tax=Hipposide... [more]
L9LC90_TUPCH3.030e-1332.35Telomerase reverse transcriptase n=2 Tax=Tupaia ch... [more]
A0A0C9Z1F6_9AGAM1.350e-1225.67Telomerase reverse transcriptase n=1 Tax=Pisolithu... [more]
K8EYH3_9CHLO1.430e-1233.09Telomerase reverse transcriptase n=1 Tax=Bathycocc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:54395..60308 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score610.5
Seed ortholog evalue4.2e-172
Seed eggNOG ortholog2880.D7FGU0
Preferred nameTERT
Length965
KEGG koko:K10626,ko:K11126
KEGG Pathwayko05165,ko05166,ko05200,ko05225,ko05226,map05165,map05166,map05200,map05225,map05226
Hectar predicted targeting categoryother localisation
Gene idEc-00_000070.1
GOsGO:0000723,GO:0006139,GO:0006259,GO:0006278,GO:0006725,GO:0006807,GO:0006996,GO:0007004,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010833,GO:0016043,GO:0018130,GO:0019438,GO:0032200,GO:0034641,GO:0034645,GO:0034654,GO:0042592,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0046483,GO:0051276,GO:0060249,GO:0065007,GO:0065008,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:1901360,GO:1901362,GO:1901576
EggNOG free text desc.telomerase RNA reverse transcriptase activity
EggNOG OGsKOG1005@1,KOG1005@2759
EC2.3.2.27,2.7.7.49
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000070Ec-00_000070Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 54350..60308 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000070.1Ec-00_000070.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 54395..60255 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000070.1.1Ec-00_000070.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 54395..54448 +
Ec-00_000070.1.2Ec-00_000070.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 54970..55047 +
Ec-00_000070.1.3Ec-00_000070.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 55587..55672 +
Ec-00_000070.1.4Ec-00_000070.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 56306..56473 +
Ec-00_000070.1.5Ec-00_000070.1.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 57344..57542 +
Ec-00_000070.1.6Ec-00_000070.1.6Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 59929..60308 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000070.1CDS:Ec-00_000070.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 54395..54448 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0000703UTR:Ec-00_000070.1Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 60256..60308 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_000070.1 ID=Ec-00_000070.1|Name=Ec-00_000070.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=304bp
MHDEVKTGDWGFSVHQAKTLVNFDMVLESRKGGGGPGQPSVRRQVRRVEG
DMFPWCGVRFDTRTCEVMANYSRYSKAGVAESLTVDSRRAGACLVGKMKR
FLSPKCHALMLDEGEHLGINSRNTVLLNVYEMLLVCAAKTATSALRLPRG
PAGNASLLSNGALETTAYAYSLIQNRSNRRNGSFGTSRGVRCVCKIHRSE
VTWLGLHAFREVFGAFAMKDRGFARCKLDVERALRETAGSRGGGFEGFSR
KIRKGKEGAAAAGCEEGATSDTQHGVRRGRAYGRLRRVVRSPDALSLLQT
LTS*
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spliced messenger RNA

>Ec-00_000070.1 ID=Ec-00_000070.1|Name=Ec-00_000070.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=965bp|location=Sequence derived from alignment at chr_00:54395..60308+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACGACGAGGTCAAGACGGGAGACTGGGGCTTTAGTGTGCACCAAGC
GAAGACGCTGGTAAACTTCGACATGGTCTTGGAGAGCAGAAAGGGAGGAG
GCGGGCCAGGACAACCGTCCGTTCGGAGACAGGTACGACGGGTCGAAGGC
GACATGTTCCCCTGGTGCGGCGTGCGCTTCGACACCCGAACGTGCGAAGT
CATGGCCAACTACTCCAGGTACTCGAAGGCCGGGGTGGCGGAGTCGTTGA
CGGTGGACTCGAGGCGCGCCGGCGCGTGCCTGGTGGGCAAGATGAAGCGG
TTCCTGTCGCCCAAGTGCCACGCCCTCATGCTCGACGAGGGGGAGCACCT
CGGGATCAACTCCAGGAACACCGTGCTGCTCAACGTGTACGAGATGCTGT
TGGTGTGTGCGGCCAAAACGGCCACTTCCGCTCTCCGTTTGCCTCGTGGT
CCCGCTGGCAACGCCTCCTTGCTGTCGAACGGTGCTCTCGAGACGACGGC
CTACGCCTACAGCCTGATCCAGAACCGCTCCAACAGGCGCAACGGGAGTT
TTGGCACCTCCAGAGGAGTGCGGTGCGTCTGCAAGATTCACCGTTCCGAG
GTGACCTGGCTTGGCCTCCACGCCTTCAGGGAGGTGTTCGGCGCCTTCGC
GATGAAGGACCGCGGGTTCGCCCGCTGCAAGCTCGACGTGGAGAGAGCCC
TCAGGGAAACTGCCGGTTCTCGGGGAGGAGGCTTCGAAGGGTTCAGTAGA
AAGATTCGCAAGGGCAAGGAGGGTGCGGCCGCTGCAGGCTGCGAGGAGGG
AGCGACATCCGACACGCAGCATGGGGTACGGCGCGGCAGGGCGTACGGCC
GGCTTCGACGTGTCGTGCGCTCGCCGGACGCGCTGTCGTTGCTGCAAACG
CTCACGTCGTAAGCACGCGCGTAACACTAGCCGGGCAGAACGAATATGTT
CCAGGCATCCCGCGG
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protein sequence of Ec-00_000070.1

>Ec-00_000070.1 ID=Ec-00_000070.1|Name=Ec-00_000070.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=304bp
MHDEVKTGDWGFSVHQAKTLVNFDMVLESRKGGGGPGQPSVRRQVRRVEG
DMFPWCGVRFDTRTCEVMANYSRYSKAGVAESLTVDSRRAGACLVGKMKR
FLSPKCHALMLDEGEHLGINSRNTVLLNVYEMLLVCAAKTATSALRLPRG
PAGNASLLSNGALETTAYAYSLIQNRSNRRNGSFGTSRGVRCVCKIHRSE
VTWLGLHAFREVFGAFAMKDRGFARCKLDVERALRETAGSRGGGFEGFSR
KIRKGKEGAAAAGCEEGATSDTQHGVRRGRAYGRLRRVVRSPDALSLLQT
LTS*
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mRNA from alignment at chr_00:54395..60308+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_000070.1 ID=Ec-00_000070.1|Name=Ec-00_000070.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=5914bp|location=Sequence derived from alignment at chr_00:54395..60308+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCACGACGAGGTCAAGACGGGAGACTGGGGCTTTAGTGTGCACCAAGC
GAAGGTGACGCGATGAGCCCCCTGTCCGGTTGACTTGAGGATCATTCTCT
CCAGTTTATATTTATACCACGTGTCTAAACTTAGACAGGAGTTCGCGCGC
TTTTGAAAATTGTCGGCGAGGGTTGTGGTTGTCGTCGTCGTTGATGCTGC
TGTTGTCCCCATATTGATGAACGCTTTGATCCCTAAGCAGTACCCTCCTC
TGCCGCACTACCCTAACCGGTAGAGAAAGATACAGTAAATTCACATCTCG
CGTAGATGGAAGAAGATATTAAGGTTCTTCCTTAGCTAACCTGGTTTAAG
TCCGTAGGTGTTATTGGGTCCAGGTGGCCGGAAGTGGCCGGAAGTTCTTT
TTTGTTTCCCATAGGGGAAATCGACACAATGGGGCACGCCCCGGGTATTT
TCGTATTTTCGGAACCAAGTGGGGTATGACTTTTTTCGGTGCGGGGCGCA
TCACCTGACACCCGGTAAGCACCTCATTGTTTTTTGTTTAAAGTTCTTTT
ATTTTCCTCGTCATCGCCTGTCCAGACGCTGGTAAACTTCGACATGGTCT
TGGAGAGCAGAAAGGGAGGAGGCGGGCCAGGACAACCGTCCGTTCGGAGA
CAGGTGGATGCTTCAGTTTAGGCTGGTCGCCTTTGAATAGTAGACGCGAA
GCCCAGAACCAGCGCTGCTTTGTTGAGAGAGAAAGTGGAAAGTGCGCGGC
ATTATTTGTACCCTACGAAGTGCCAGCATTGCGAGTCCAACGAGAAACAC
GTTCCTGTTTCAGATTACTCTCCCTACATGCGTATCCCGCTGCAAGTGCC
ACTATATTTTTTGTATGTTTTGCTGGGTTTGGTGCCACTATTTTTTGTTT
ATTTTGCTGGGGTTATGTCTCCAAGCCCGATGTCACGCTGACCAGCAATG
TTGAGCTGGCGACGATTTCGTTCCATTGCTGTCTTGTGACTTGCACACAC
GCGCGCATCGACGGCGTGGCAGTTTCGCGTTCGATGGATACATCCCCTCT
CAGCCGTACGCTGTGTACATGGCACGATATCATTCCGTCGAGGCCCCGCG
GAGGAAACAAACCACAACGTGAACCACCAGGGGGGTACGCGACAATCTCC
CGCGGTCTGTTGGCTGCGGTTCACCCTGCCGTCTCGTGTCAGGTACGACG
GGTCGAAGGCGACATGTTCCCCTGGTGCGGCGTGCGCTTCGACACCCGAA
CGTGCGAAGTCATGGCCAACTACTCCAGGTACACAGCAGTGCACACGCCA
CGGCTTGTTCCGGAGGCCGCCAACGCTGGCCGGAAGAACGTGATCACAGC
CGAGTTGGCTAGATTCATTTTGACTGCTCTCTTGCAATACAATGGGGGTT
CCTGTTTAGTGACGGTTGAATAGCGTCAATGCCCGGGATACTGGCGTTGT
TGTCGGCGGGCAAACACTGAATTTCTAAGTCATTGTCAGTACTTTGGAAC
AGTGCCGGTCCGGTATAGTGCGGGTAAATCTTCTGGACACATGTGTACCG
GCACAGTAAACAGGGACCCTAACTGCAGGCGCATTTGCGGCGTTGTAACC
GCGAAAGAGCAAGCCTCTCATTCAAAGGGAGGGTTACCGCCTTGTGGAAG
GTTCGCCGGCACACTCGAAGGAGAAGTAGGGTTTCATCCACCTCTCCCTT
GTGATGTGATAGGCCCATCGCGCACAAAATTTTCATGGGACAGAGCTAAA
CACAGCCTCGAAGCCACTGTTGAAGCGGTGAAAGACATACAAGCCGTCGC
TGATTTGTTCTGGGTGTTGCGCTGATGTTGGTACTACGAATGCTGGTATC
ACCCGCTCTCCCGCCATCGCCCACCGCGACCGTTGACATCGCCACCCGCC
CCGTCGTCCAGGTACTCGAAGGCCGGGGTGGCGGAGTCGTTGACGGTGGA
CTCGAGGCGCGCCGGCGCGTGCCTGGTGGGCAAGATGAAGCGGTTCCTGT
CGCCCAAGTGCCACGCCCTCATGCTCGACGAGGGGGAGCACCTCGGGATC
AACTCCAGGAACACCGTGCTGCTCAACGTGTGAGTTTTGTTCCTGCTCGC
CAGACCGCATTTCGCCTTTTTCTGGAAAACACACGCGCCGTGTTATTTTT
GTGCGTTGGAGCACAATTCTACTTGTTCGCATGCGTGTTTTGGCCGCCGC
TGCTGCTGAGCTACGCCTCTTGTCGTAATCGAGGACACCAATGTTTACTT
TCGAAGTGGATCGTGCTACGTGATTGCGTGCTTTTGGAGGGAGGGTCAGC
TTGTGGGTCTTGGGTGCAACATCCTACACTTGCGCTACATTGCTGTAGCG
GTGGATTTCTCGTCTCGCCCGGCCATTGAACACACCGCATCCCACCGTGC
CTTGAGATGAACATTTTGTTCTGCCCACAAGGCGTTGACAAGCCAACCCT
AACCCCTGAAAAACACCGCGCCCTCTCAATTTCTGAGGCGGCAGCTGTGA
TTTCACGCTTGAGACGAAAGGTTCGCAAACGAAACGTACGTGCACGGTTT
TTGGCAGACGGACTTATGTACCTCCATGTACGCGCCGAACTTATGCTTCC
TTCAAGGTTCACTTTCAGCGTTTGTAATGAACAGATTACCCCTTCAGGGC
ACCCCACCTTGGCGTCAGAAAGCGATGTAAAGTCGGTTGATAATGCGATT
TGGCCAAGGTCTACCTACGTGTGAAACAGGAACACCACTGTGTTCAAGCT
TTCTCGGAGTGGTCACGGGGTCGTTAGGCAGGCAGTCCATGCTCCGCGAA
CTGGCGATGTGCTTTTGTCATGATTCTTCGACTACCGCTTGTTGATATCA
TTCTACGAAGGTTCCGGTCCACTCTTTACGTGGGAGCTATGAACCATCGT
TGGGTTCCTCCAATTTGCGGTGTGACGGTCCACTTTGTTTTTGTTTCAGG
TACGAGATGCTGTTGGTGTGTGCGGCCAAAACGGCCACTTCCGCTCTCCG
TTTGCCTCGTGGTCCCGCTGGCAACGCCTCCTTGCTGTCGAACGGTGCTC
TCGAGACGACGGCCTACGCCTACAGCCTGATCCAGAACCGCTCCAACAGG
CGCAACGGGAGTTTTGGCACCTCCAGAGGAGTGCGGTGCGTCTGCAAGGT
GCGAGCAACGTTGACTTAGCGCGTGCCGACATAGCAGTCATGAGAAGGGG
AGATGGAGGGAAGAGGGAGGGAAGAGAGAGGAAGGGAGGGAGCGAGAGAT
AGATACAGAGATACAGAGATACAGAGGCAGAGGCAGAGGCAGAGGCAGAG
GCACAGACAGACAGAGAACGAGGGATGGAGAGATGTAAAACCCCGGGAAC
TTTTCTTTGTACACCGGATTGCAACACGAAGAACCGAATCCTTCGGAACC
TATTGCGAGTGCCATCCCCAGCAGTAGTAGGAGGACCGGGCGTCCCAAGG
TTCCGGAAGTTGTCCAACCAGTTGATGTAGGTTCTACGTTGTACTTGGGA
CATTTTTGACCTATGGAGCAGACGGAGACAACGTGCATGTAGGCCAGCAG
ACCAAAGCAGACTGGATGTGGTAGGGGTGTTGGTGGATGTTTTTGTGGGG
GCCCCGTAGGATGCACCGAAAACGAACGGCGCGATTGGTTGTTATTGTCG
GCGGCAGGCACATTCTGCGTCGGCGGCTTCCCGTGGGCTTAAGGCGATGC
CCAAGAAACGTTTTTGTGCTTTTTGGTGCAGCGCCGAAGCGCTGACTACT
TCCCCCCTCCCTCACCCCCGATATTTCGATGTTCTCCTGCTCAGCTTTGC
ATGCATCCCAAGTCCGTGGCTGTGGTCAACAACCTACAGGATGAACACTC
ATGAGCACCCACTCCCGCCTTCTATGATAGGCAAATGGACGGTGAAACCT
GACGATCACTCGGAAATCTGGAAGTACTGTGGCTCACAGGAGCCGCGGTG
GTCCTCCATTTCGGTCCCCAAAGATGCAACAGTCTTGGGAAGGGAAACTG
ATCGCATCCCGAGGTTGGGATAAATACCCTGGTCCGGGTGAAAACCCGGT
GTGCTTCGTCCCGGCTTTGTAAGGATGCGACGTCAATGGCCTAACGACTA
CAGCATGCACGAGAATGAGTAACCCCCCCCGGTGTTTGCCATCGGGGTTG
GGTTTTCGTCGCTTGGCAACGACGTTGTAAAACATGCCCCCCCCTCGGTG
TTTGCCATCGGGATTGGGTTTTCGTCGCTTGGCAACGACATTGTAGAACA
AGCCAATTCACTTCGTGAACTCGGCAACTAGGTTACCGTTATTTTTTTTA
CCTCGTTTTTTTTTTTTGCGGTAACCATAATGGTGGTCGAGTAGATCATG
TTGTGCGGGGAGGAGAACCCTCACTCCGCGCAACGGGGGATGATCGCACC
ACGTTGTGTTAAAATGGTCAAGCATCTTCGAGGCAGTTACACAGTGCTTA
TAACTGTCTCTGGAAGTGAAAGCACCAGAAAATAAATGAAGTCATACGTA
GCTGTCATCCGTACGCAAGGAAGTAAGCACAAGATGCCGAACACTCTTAG
CAGGATGCAGCTCACCCTTCATGCGACTCGCCGAATACCTCACGGCGCTT
CGCGCCTGGTCATGTGAGAGCCTGGTCCGGTGAGAACCCGGCGTGCTCCG
TCCCGGCTTTGTAGGGATGCGAGGTCAATGGTCAAACGACTACGGCATGC
ACGACTATGAGTACCCCCCCCCCCCCCCCCCCCTTTGNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNTTTGGCCCCCCCCCCCCCCCCTTTCCCCCCCCGGTGTTTGCCA
TCGGGGTTGGGTTTTCGTCGCTTGGCAACGACGTTGTAAAACAAGCCGCC
CCCCCCGGTGTTTGCCATCGGGGTTTGGGTTTTCGTCGCTTGGCAACGAC
GTTGTAAAACAAGCCCCCCACTCGGTGTTTGCCATCGGGATTGGGTTTTC
GTCGCTTGGTAAACGACGTTGTAAAACAAGCCAATTCACTTCGTGAACTC
GGCAACCAGGTTACCGTTTTTTTTTTTACCTCGTTTTTTTTTTTTTGGCG
GTAACCATAATGGTGGTCGAGTAGATCATGTTGTGCGGGGTGGAGAAACC
TCACTCCGCGCAACGGGGGGTGATCGCACCACGTTGTGTTAAAATGGTCA
AGCATCCTCGAGGCAGTTACACAGTGCTTACAACTGTCTCTGGAAGTAAA
AGCACCAGAAAGTAAATTAAGTCGTACGTAGCTGTCATCCGTACGCAAGG
AAGTAAGCACAAGATGCCGAACACCCTTAGCAGGATGCAGCTCACCCTTC
ATGCGACTCGCCGAATACCTCACGGCGCTTCGCGCTTGGTGATGTGAGAG
CCTGGTCCGGTGAGAACCCGGTGTGCTCCGTCCCGGCTTTGTAGGGATGC
GAGGTTAATGGTCAAACGACTACGGCATGCACGACTATGAGTACACCCCC
CCCCCCCCCCCCTTTGCGTGCTTGCTTTTTCCAGATTCACCGTTCCGAGG
TGACCTGGCTTGGCCTCCACGCCTTCAGGGAGGTGTTCGGCGCCTTCGCG
ATGAAGGACCGCGGGTTCGCCCGCTGCAAGCTCGACGTGGAGAGAGCCCT
CAGGGAAACTGCCGGTTCTCGGGGAGGAGGCTTCGAAGGGTTCAGTAGAA
AGATTCGCAAGGGCAAGGAGGGTGCGGCCGCTGCAGGCTGCGAGGAGGGA
GCGACATCCGACACGCAGCATGGGGTACGGCGCGGCAGGGCGTACGGCCG
GCTTCGACGTGTCGTGCGCTCGCCGGACGCGCTGTCGTTGCTGCAAACGC
TCACGTCGTAAGCACGCGCGTAACACTAGCCGGGCAGAACGAATATGTTC
CAGGCATCCCGCGG
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Coding sequence (CDS) from alignment at chr_00:54395..60308+

>Ec-00_000070.1 ID=Ec-00_000070.1|Name=Ec-00_000070.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=912bp|location=Sequence derived from alignment at chr_00:54395..60308+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCACGACGAGGTCAAGACGGGAGACTGGGGCTTTAGTGTGCACCAAGC
GAAGACGCTGGTAAACTTCGACATGGTCTTGGAGAGCAGAAAGGGAGGAG
GCGGGCCAGGACAACCGTCCGTTCGGAGACAGGTACGACGGGTCGAAGGC
GACATGTTCCCCTGGTGCGGCGTGCGCTTCGACACCCGAACGTGCGAAGT
CATGGCCAACTACTCCAGGTACTCGAAGGCCGGGGTGGCGGAGTCGTTGA
CGGTGGACTCGAGGCGCGCCGGCGCGTGCCTGGTGGGCAAGATGAAGCGG
TTCCTGTCGCCCAAGTGCCACGCCCTCATGCTCGACGAGGGGGAGCACCT
CGGGATCAACTCCAGGAACACCGTGCTGCTCAACGTGTACGAGATGCTGT
TGGTGTGTGCGGCCAAAACGGCCACTTCCGCTCTCCGTTTGCCTCGTGGT
CCCGCTGGCAACGCCTCCTTGCTGTCGAACGGTGCTCTCGAGACGACGGC
CTACGCCTACAGCCTGATCCAGAACCGCTCCAACAGGCGCAACGGGAGTT
TTGGCACCTCCAGAGGAGTGCGGTGCGTCTGCAAGATTCACCGTTCCGAG
GTGACCTGGCTTGGCCTCCACGCCTTCAGGGAGGTGTTCGGCGCCTTCGC
GATGAAGGACCGCGGGTTCGCCCGCTGCAAGCTCGACGTGGAGAGAGCCC
TCAGGGAAACTGCCGGTTCTCGGGGAGGAGGCTTCGAAGGGTTCAGTAGA
AAGATTCGCAAGGGCAAGGAGGGTGCGGCCGCTGCAGGCTGCGAGGAGGG
AGCGACATCCGACACGCAGCATGGGGTACGGCGCGGCAGGGCGTACGGCC
GGCTTCGACGTGTCGTGCGCTCGCCGGACGCGCTGTCGTTGCTGCAAACG
CTCACGTCGTAA
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Synonyms
The feature 'Ec-00_000070.1' has the following synonyms
Synonym
Esi1010_0001
Esi_1010_0001