Ec-00_000050.4 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_000050.4
Unique NameEc-00_000050.4
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length224
Homology
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BLAST of Ec-00_000050.4 vs. uniprot
Match: A0A6H5JAX9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JAX9_9PHAE)

HSP 1 Score: 372 bits (955), Expect = 3.290e-128
Identity = 200/214 (93.46%), Postives = 204/214 (95.33%), Query Frame = 2 
Query:  227 MLGRGGSEAVANGSRSAIAATAGASTLPRAGFSSAAGGHYRVPTPTEQTPSPRKGMPNGDGGGVFAFGVDSPDSSGPDKRDDHGYFEASGGGSKRAGGCGGNLGTGYEQGHSVSPARRWRSEDAGGGESDDEVEGGGVDAGFREELDVFASSLRRDFERKLMVTARDGLAAACERERSAGRLRLEAQRRHSSEEILHLEGEGRRLKAEVARLRR 868
            MLGRGGSEAVANGSRSAIAA AGASTLP  GFSSAAGGHYRVPTPTEQTPSPRKGMP G GGGVFAFGVDSPDSSGPDKRDDHGYFEAS GGSK+AGGCGGNLGTGYEQG  VSPARRWRSED+GGGESDDEVEGGGVDAGFREELDVFASSLRRDFERKLMVTARDGLAAAC RER+AGRLRLEAQRRHSSEEILHLE EGRRL+AEVARLRR
Sbjct:    1 MLGRGGSEAVANGSRSAIAAAAGASTLPSTGFSSAAGGHYRVPTPTEQTPSPRKGMPYGGGGGVFAFGVDSPDSSGPDKRDDHGYFEASEGGSKKAGGCGGNLGTGYEQGQGVSPARRWRSEDSGGGESDDEVEGGGVDAGFREELDVFASSLRRDFERKLMVTARDGLAAACARERNAGRLRLEAQRRHSSEEILHLEAEGRRLEAEVARLRR 214
The following BLAST results are available for this feature:
BLAST of Ec-00_000050.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JAX9_9PHAE3.290e-12893.46Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:36706..39329 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length873
Hectar predicted targeting categoryother localisation
Gene idEc-00_000050.4
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000050Ec-00_000050Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 35364..39463 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000050.4.3Ec-00_000050.4.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 36706..36870 -
Ec-00_000050.4.2Ec-00_000050.4.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 37423..37944 -
Ec-00_000050.4.1Ec-00_000050.4.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 39144..39329 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000050.4CDS:Ec-00_000050.4Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 36706..36870 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0000505UTR:Ec-00_000050.4Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 37930..37944 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000050.4Ec-00_000050.4Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 36706..37929 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_000050.4 ID=Ec-00_000050.4|Name=Ec-00_000050.4|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=224bp
MKLTSDSSGMLGRGGSEAVANGSRSAIAATAGASTLPRAGFSSAAGGHYR
VPTPTEQTPSPRKGMPNGDGGGVFAFGVDSPDSSGPDKRDDHGYFEASGG
GSKRAGGCGGNLGTGYEQGHSVSPARRWRSEDAGGGESDDEVEGGGVDAG
FREELDVFASSLRRDFERKLMVTARDGLAAACERERSAGRLRLEAQRRHS
SEEILHLEGEGRRLKAEVARLRR*
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spliced messenger RNA

>Ec-00_000050.4 ID=Ec-00_000050.4|Name=Ec-00_000050.4|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=873bp|location=Sequence derived from alignment at chr_00:36706..39329- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
TTCGAACGGGAGCGGACGAGAAAGCGTGGCTCTCGCGGCAAGAACTTGCA
TCCAAGCGCTCGACAGCAGATCCTCGCAGCAGCCAAGCTTTCCACCAACA
ACGCTCACGGCCAGCTACGGCAGATGGCGTGGCGACTGGGGGTAGAGGTG
CAGGGAGATCGCTCCTGCCTCTTACAAAGTTGAGTAGGCCCATCCCCGGA
CATGAAATTGACCTCCGACAGTTCTGGCATGCTGGGTCGTGGTGGAAGCG
AAGCCGTCGCGAATGGCAGTCGCAGCGCCATCGCCGCCACCGCGGGCGCG
TCAACACTCCCAAGGGCCGGGTTTTCGTCCGCCGCCGGTGGCCACTACCG
GGTACCGACCCCGACAGAACAGACCCCGTCCCCTCGCAAAGGCATGCCCA
ACGGCGATGGCGGGGGCGTGTTTGCGTTCGGGGTAGATTCGCCGGATAGC
AGCGGCCCTGACAAGCGCGACGATCACGGGTACTTCGAGGCTAGCGGAGG
AGGATCGAAAAGGGCCGGCGGCTGCGGTGGCAATCTCGGAACGGGATACG
AGCAAGGACACAGTGTTTCCCCCGCTCGGAGGTGGCGCTCGGAGGATGCA
GGCGGCGGAGAGAGCGACGACGAGGTGGAAGGAGGGGGGGTGGACGCCGG
GTTTCGAGAAGAGCTGGACGTGTTCGCGTCGTCTTTGCGAAGGGACTTCG
AGCGGAAGCTGATGGTGACGGCGAGAGATGGGCTGGCGGCGGCCTGCGAG
AGAGAGCGGAGCGCGGGGCGCTTGCGGCTGGAGGCGCAGAGGAGGCACAG
CAGCGAAGAGATCCTTCACCTCGAGGGTGAAGGGAGGCGGTTGAAGGCGG
AGGTGGCCAGGCTTCGGAGGTGA
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protein sequence of Ec-00_000050.4

>Ec-00_000050.4 ID=Ec-00_000050.4|Name=Ec-00_000050.4|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=224bp
MKLTSDSSGMLGRGGSEAVANGSRSAIAATAGASTLPRAGFSSAAGGHYR
VPTPTEQTPSPRKGMPNGDGGGVFAFGVDSPDSSGPDKRDDHGYFEASGG
GSKRAGGCGGNLGTGYEQGHSVSPARRWRSEDAGGGESDDEVEGGGVDAG
FREELDVFASSLRRDFERKLMVTARDGLAAACERERSAGRLRLEAQRRHS
SEEILHLEGEGRRLKAEVARLRR*
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mRNA from alignment at chr_00:36706..39329-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_000050.4 ID=Ec-00_000050.4|Name=Ec-00_000050.4|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2624bp|location=Sequence derived from alignment at chr_00:36706..39329- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
TTCGAACGGGAGCGGACGAGAAAGCGTGGCTCTCGCGGCAAGAACTTGCA
TCCAAGCGCTCGACAGCAGATCCTCGCAGCAGCCAAGCTTTCCACCAACA
ACGCTCACGGCCAGCTACGGCAGATGGCGTGGCGACTGGGGGTAGAGGTG
CAGGGAGATCGCTCCTGCCTCTTACAAAGTTGAGTAGCAAACTATTTGCA
ACCTTATTTTAGGCAGCGCACAGGGGCCGACAGTAGCACTCCCACGAGCA
GGGTGTTTATTTCCAACGGGCGTCTGTCTCCCTGTGGAACACAGCTACAT
GCGGAAGTGCTTCCGCTGCGCAGCTGATGCCCAGCACGGGCAAGATCCAT
GTGGCTTCTTGCCCACGTCGAGCTGTGTTGCATGTAGACAACCGGCATTT
GCCCCCGTTGTCGATGTTGTTATCGTGATTGCTCGGGAAATCAAGTTTTT
CGGTAGGTGGACATCCGCATTTTCACACCAATCGTGGTAAACTCACCGCA
TCCATTTTTCGCCTCGCGACGGCGATTGCCGCCAACGTATCTATCTTCAC
CCCACCCTCGCAACTTGCGAGATGCGCGCACACGATATCTCGTCCCGGCG
GCTGTCACTCCAGTTTCAGTGATCGCGGGTTGCTGCTCCCTCAACCCGCT
ACGCTGCATTTCGGCTAGTGGTAGTAGCAACGGCACGTGTGCCGTGTGCA
GCAGTGGCATTTTCAAAACCTCGGGTGCGTGCATCGAATCATTCTCACAG
AGCCCTGCCAAAAATTGCAAGCATTCTAGAGTCCAGCTCGTTTTTATGGC
AGTAGTACGATAGTGGCGCGAAAGAAAGCCGTAGCGGAGTTCCCAGCCGA
CGGTTGCGCGCCCTCCGCATGCTTTTCGAAGAATACTCCAAGATATTAAC
ATGTCACCACGTGAGATACCACCCCCCCCTGAAGGTCGAACGACCACAGC
AAGAAGAGAGCCGCTGCCGAAGGCGCGGCATTGGAAAGGAAATATCTAAA
CCAATCCAAAGCCCCATCGGTCGGTACTGCTGTCTGTCACCCTAACTGAT
GTGGAGAAATCTAGCTGCAAAAAGTTGTCCAGAGGGGGTGAGGTAATCTT
GTGCGGCTTAAGGTATACCCAAACTGGTATATGCGACGTACGCGTAGGCA
AGATCGGAGTCCTTGGATTGGTGATTGGGGAGGGAAAGAAGCCCAACGTA
CAAGCACACCGATCCGCCGGCTGTGGGGCGCCCTGTACCCAAATGCCCGC
TATACGTACCCGCTTGTATGAGCTCGCTTTCCCGACCTTCTTCTATACCC
ACCCACATTCATCTGTCGCATGAATACCGCTGTTCACCCTTCGCCCGCAT
CGGCGGGAAACCGCCCTATCGCTTGTTTCCCGCAGGGCCCATCCCCGGAC
ATGAAATTGACCTCCGACAGTTCTGGCATGCTGGGTCGTGGTGGAAGCGA
AGCCGTCGCGAATGGCAGTCGCAGCGCCATCGCCGCCACCGCGGGCGCGT
CAACACTCCCAAGGGCCGGGTTTTCGTCCGCCGCCGGTGGCCACTACCGG
GTACCGACCCCGACAGAACAGACCCCGTCCCCTCGCAAAGGCATGCCCAA
CGGCGATGGCGGGGGCGTGTTTGCGTTCGGGGTAGATTCGCCGGATAGCA
GCGGCCCTGACAAGCGCGACGATCACGGGTACTTCGAGGCTAGCGGAGGA
GGATCGAAAAGGGCCGGCGGCTGCGGTGGCAATCTCGGAACGGGATACGA
GCAAGGACACAGTGTTTCCCCCGCTCGGAGGTGGCGCTCGGAGGATGCAG
GCGGCGGAGAGAGCGACGACGAGGTGGAAGGAGGGGGGGTGGACGCCGGG
TTTCGAGAAGAGCTGGACGTGTTCGCGTCGTCTTTGCGAAGGGACTTCGA
GCGGAAGGTCTGTGTCGATGTTGCTGCGAAGTTGTGAGGGTGGGAGTGAT
GGTTGGTGTTCTTTGCACCGTCTGAGTTTGCGGGCTTTGCGGGAGTTAGC
CTTCCGGCGTGTAGATGTGTGTATGTGGCTCCTCTTGCTTGTGGTCTACC
GTAGGTGGTTGTAGATGAAACGTCCCGTTGGGCCAGGTTTCAAAGCTGGA
TTACTCCCCAGCAAGGGTGGTAGCGCCGAAAATTGCGACGTTGGAGCCTG
TTCGTCGAGAGCTTTTCGAAAACGTCTCGTTTGCTTTATGGGGAGCATCC
TTTCCGTCGTGGAGTAATCGGTGCGGAGTGTGTAGTATCCTGTGTCTCCT
ACGGTACTCTGCTCAGTATGTACAAGAGCTCGCACGTATGGCTTGTATGT
ACACTTGTGCTGTACGTGTTTTTTTTCGTCTTTCGCCAGGCTTGTGAGAG
CTTCAGCGCCGACGCTTGTGTGATTAGATGGCCAGCGTATTGTCGCGGAA
GACAGCGATGAAAATGTCTGCTGTTCCCTCCAAATTGCGTCGCCCAACCA
ACTTGGCAGCTGATGGTGACGGCGAGAGATGGGCTGGCGGCGGCCTGCGA
GAGAGAGCGGAGCGCGGGGCGCTTGCGGCTGGAGGCGCAGAGGAGGCACA
GCAGCGAAGAGATCCTTCACCTCGAGGGTGAAGGGAGGCGGTTGAAGGCG
GAGGTGGCCAGGCTTCGGAGGTGA
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Coding sequence (CDS) from alignment at chr_00:36706..39329-

>Ec-00_000050.4 ID=Ec-00_000050.4|Name=Ec-00_000050.4|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=672bp|location=Sequence derived from alignment at chr_00:36706..39329- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGAAATTGACCTCCGACAGTTCTGGCATGCTGGGTCGTGGTGGAAGCGA
AGCCGTCGCGAATGGCAGTCGCAGCGCCATCGCCGCCACCGCGGGCGCGT
CAACACTCCCAAGGGCCGGGTTTTCGTCCGCCGCCGGTGGCCACTACCGG
GTACCGACCCCGACAGAACAGACCCCGTCCCCTCGCAAAGGCATGCCCAA
CGGCGATGGCGGGGGCGTGTTTGCGTTCGGGGTAGATTCGCCGGATAGCA
GCGGCCCTGACAAGCGCGACGATCACGGGTACTTCGAGGCTAGCGGAGGA
GGATCGAAAAGGGCCGGCGGCTGCGGTGGCAATCTCGGAACGGGATACGA
GCAAGGACACAGTGTTTCCCCCGCTCGGAGGTGGCGCTCGGAGGATGCAG
GCGGCGGAGAGAGCGACGACGAGGTGGAAGGAGGGGGGGTGGACGCCGGG
TTTCGAGAAGAGCTGGACGTGTTCGCGTCGTCTTTGCGAAGGGACTTCGA
GCGGAAGCTGATGGTGACGGCGAGAGATGGGCTGGCGGCGGCCTGCGAGA
GAGAGCGGAGCGCGGGGCGCTTGCGGCTGGAGGCGCAGAGGAGGCACAGC
AGCGAAGAGATCCTTCACCTCGAGGGTGAAGGGAGGCGGTTGAAGGCGGA
GGTGGCCAGGCTTCGGAGGTGA
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Synonyms
The feature 'Ec-00_000050.4' has the following synonyms
Synonym
Esi1007_0001
Esi_1007_0001