Ec-00_000050.3 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_000050.3
Unique NameEc-00_000050.3
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length251
Homology
[Close]
BLAST of Ec-00_000050.3 vs. uniprot
Match: A0A6H5JAX9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JAX9_9PHAE)

HSP 1 Score: 374 bits (960), Expect = 5.370e-122
Identity = 200/214 (93.46%), Postives = 204/214 (95.33%), Query Frame = 1 
Query: 1561 MLGRGGSEAVANGSRSAIAATAGASTLPRAGFSSAAGGHYRVPTPTEQTPSPRKGMPNGDGGGVFAFGVDSPDSSGPDKRDDHGYFEASGGGSKRAGGCGGNLGTGYEQGHSVSPARRWRSEDAGGGESDDEVEGGGVDAGFREELDVFASSLRRDFERKLMVTARDGLAAACERERSAGRLRLEAQRRHSSEEILHLEGEGRRLKAEVARLRR 2202
            MLGRGGSEAVANGSRSAIAA AGASTLP  GFSSAAGGHYRVPTPTEQTPSPRKGMP G GGGVFAFGVDSPDSSGPDKRDDHGYFEAS GGSK+AGGCGGNLGTGYEQG  VSPARRWRSED+GGGESDDEVEGGGVDAGFREELDVFASSLRRDFERKLMVTARDGLAAAC RER+AGRLRLEAQRRHSSEEILHLE EGRRL+AEVARLRR
Sbjct:    1 MLGRGGSEAVANGSRSAIAAAAGASTLPSTGFSSAAGGHYRVPTPTEQTPSPRKGMPYGGGGGVFAFGVDSPDSSGPDKRDDHGYFEASEGGSKKAGGCGGNLGTGYEQGQGVSPARRWRSEDSGGGESDDEVEGGGVDAGFREELDVFASSLRRDFERKLMVTARDGLAAACARERNAGRLRLEAQRRHSSEEILHLEAEGRRLEAEVARLRR 214
The following BLAST results are available for this feature:
BLAST of Ec-00_000050.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JAX9_9PHAE5.370e-12293.46Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:36544..39463 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length2368
Hectar predicted targeting categoryother localisation
Gene idEc-00_000050.3
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000050Ec-00_000050Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 35364..39463 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000050.3.2Ec-00_000050.3.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 36544..36870 -
Ec-00_000050.3.1Ec-00_000050.3.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 37423..39463 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0000503UTR:Ec-00_000050.3Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 36544..36705 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000050.3CDS:Ec-00_000050.3Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 36706..36870 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0000505UTR:Ec-00_000050.3Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 38011..39463 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000050.3Ec-00_000050.3Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 36706..38010 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_000050.3 ID=Ec-00_000050.3|Name=Ec-00_000050.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=251bp
MNTAVHPSPASAGNRPIACFPQGPSPDMKLTSDSSGMLGRGGSEAVANGS
RSAIAATAGASTLPRAGFSSAAGGHYRVPTPTEQTPSPRKGMPNGDGGGV
FAFGVDSPDSSGPDKRDDHGYFEASGGGSKRAGGCGGNLGTGYEQGHSVS
PARRWRSEDAGGGESDDEVEGGGVDAGFREELDVFASSLRRDFERKLMVT
ARDGLAAACERERSAGRLRLEAQRRHSSEEILHLEGEGRRLKAEVARLRR
*
back to top

spliced messenger RNA

>Ec-00_000050.3 ID=Ec-00_000050.3|Name=Ec-00_000050.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2368bp|location=Sequence derived from alignment at chr_00:36544..39463- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
TAGGACGTGACAAGACATGCACTCGCAGGGTGTCGGCGACCAGCGCAGCA
TTCAGAGCCGAGAACAGACAGACACACATAGCGCGATGCTAGAGAAAGGA
GAGACAAGCCAGGGCTGCAAGGCGGGCTCGAGGGTTCGAACGGGAGCGGA
CGAGAAAGCGTGGCTCTCGCGGCAAGAACTTGCATCCAAGCGCTCGACAG
CAGATCCTCGCAGCAGCCAAGCTTTCCACCAACAACGCTCACGGCCAGCT
ACGGCAGATGGCGTGGCGACTGGGGGTAGAGGTGCAGGGAGATCGCTCCT
GCCTCTTACAAAGTTGAGTAGCAAACTATTTGCAACCTTATTTTAGGCAG
CGCACAGGGGCCGACAGTAGCACTCCCACGAGCAGGGTGTTTATTTCCAA
CGGGCGTCTGTCTCCCTGTGGAACACAGCTACATGCGGAAGTGCTTCCGC
TGCGCAGCTGATGCCCAGCACGGGCAAGATCCATGTGGCTTCTTGCCCAC
GTCGAGCTGTGTTGCATGTAGACAACCGGCATTTGCCCCCGTTGTCGATG
TTGTTATCGTGATTGCTCGGGAAATCAAGTTTTTCGGTAGGTGGACATCC
GCATTTTCACACCAATCGTGGTAAACTCACCGCATCCATTTTTCGCCTCG
CGACGGCGATTGCCGCCAACGTATCTATCTTCACCCCACCCTCGCAACTT
GCGAGATGCGCGCACACGATATCTCGTCCCGGCGGCTGTCACTCCAGTTT
CAGTGATCGCGGGTTGCTGCTCCCTCAACCCGCTACGCTGCATTTCGGCT
AGTGGTAGTAGCAACGGCACGTGTGCCGTGTGCAGCAGTGGCATTTTCAA
AACCTCGGGTGCGTGCATCGAATCATTCTCACAGAGCCCTGCCAAAAATT
GCAAGCATTCTAGAGTCCAGCTCGTTTTTATGGCAGTAGTACGATAGTGG
CGCGAAAGAAAGCCGTAGCGGAGTTCCCAGCCGACGGTTGCGCGCCCTCC
GCATGCTTTTCGAAGAATACTCCAAGATATTAACATGTCACCACGTGAGA
TACCACCCCCCCCTGAAGGTCGAACGACCACAGCAAGAAGAGAGCCGCTG
CCGAAGGCGCGGCATTGGAAAGGAAATATCTAAACCAATCCAAAGCCCCA
TCGGTCGGTACTGCTGTCTGTCACCCTAACTGATGTGGAGAAATCTAGCT
GCAAAAAGTTGTCCAGAGGGGGTGAGGTAATCTTGTGCGGCTTAAGGTAT
ACCCAAACTGGTATATGCGACGTACGCGTAGGCAAGATCGGAGTCCTTGG
ATTGGTGATTGGGGAGGGAAAGAAGCCCAACGTACAAGCACACCGATCCG
CCGGCTGTGGGGCGCCCTGTACCCAAATGCCCGCTATACGTACCCGCTTG
TATGAGCTCGCTTTCCCGACCTTCTTCTATACCCACCCACATTCATCTGT
CGCATGAATACCGCTGTTCACCCTTCGCCCGCATCGGCGGGAAACCGCCC
TATCGCTTGTTTCCCGCAGGGCCCATCCCCGGACATGAAATTGACCTCCG
ACAGTTCTGGCATGCTGGGTCGTGGTGGAAGCGAAGCCGTCGCGAATGGC
AGTCGCAGCGCCATCGCCGCCACCGCGGGCGCGTCAACACTCCCAAGGGC
CGGGTTTTCGTCCGCCGCCGGTGGCCACTACCGGGTACCGACCCCGACAG
AACAGACCCCGTCCCCTCGCAAAGGCATGCCCAACGGCGATGGCGGGGGC
GTGTTTGCGTTCGGGGTAGATTCGCCGGATAGCAGCGGCCCTGACAAGCG
CGACGATCACGGGTACTTCGAGGCTAGCGGAGGAGGATCGAAAAGGGCCG
GCGGCTGCGGTGGCAATCTCGGAACGGGATACGAGCAAGGACACAGTGTT
TCCCCCGCTCGGAGGTGGCGCTCGGAGGATGCAGGCGGCGGAGAGAGCGA
CGACGAGGTGGAAGGAGGGGGGGTGGACGCCGGGTTTCGAGAAGAGCTGG
ACGTGTTCGCGTCGTCTTTGCGAAGGGACTTCGAGCGGAAGCTGATGGTG
ACGGCGAGAGATGGGCTGGCGGCGGCCTGCGAGAGAGAGCGGAGCGCGGG
GCGCTTGCGGCTGGAGGCGCAGAGGAGGCACAGCAGCGAAGAGATCCTTC
ACCTCGAGGGTGAAGGGAGGCGGTTGAAGGCGGAGGTGGCCAGGCTTCGG
AGGTGATTGCCGTGCTGCGCAGCAGCTGTGGGTGCTTCGTTTTTTTTAGT
AAACATAAATTCTGGACAATGTATATACCGGCTAAGTTAGGGCCTGCGTG
CCCCCTCCCTGACCTTGTTTCATACAATAGTATAGTAGCCTTACCTTCGT
TGTGTAGGCAGCTGGGCG
back to top

protein sequence of Ec-00_000050.3

>Ec-00_000050.3 ID=Ec-00_000050.3|Name=Ec-00_000050.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=251bp
MNTAVHPSPASAGNRPIACFPQGPSPDMKLTSDSSGMLGRGGSEAVANGS
RSAIAATAGASTLPRAGFSSAAGGHYRVPTPTEQTPSPRKGMPNGDGGGV
FAFGVDSPDSSGPDKRDDHGYFEASGGGSKRAGGCGGNLGTGYEQGHSVS
PARRWRSEDAGGGESDDEVEGGGVDAGFREELDVFASSLRRDFERKLMVT
ARDGLAAACERERSAGRLRLEAQRRHSSEEILHLEGEGRRLKAEVARLRR
*
back to top

mRNA from alignment at chr_00:36544..39463-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_000050.3 ID=Ec-00_000050.3|Name=Ec-00_000050.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2920bp|location=Sequence derived from alignment at chr_00:36544..39463- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
TAGGACGTGACAAGACATGCACTCGCAGGGTGTCGGCGACCAGCGCAGCA
TTCAGAGCCGAGAACAGACAGACACACATAGCGCGATGCTAGAGAAAGGA
GAGACAAGCCAGGGCTGCAAGGCGGGCTCGAGGGTTCGAACGGGAGCGGA
CGAGAAAGCGTGGCTCTCGCGGCAAGAACTTGCATCCAAGCGCTCGACAG
CAGATCCTCGCAGCAGCCAAGCTTTCCACCAACAACGCTCACGGCCAGCT
ACGGCAGATGGCGTGGCGACTGGGGGTAGAGGTGCAGGGAGATCGCTCCT
GCCTCTTACAAAGTTGAGTAGCAAACTATTTGCAACCTTATTTTAGGCAG
CGCACAGGGGCCGACAGTAGCACTCCCACGAGCAGGGTGTTTATTTCCAA
CGGGCGTCTGTCTCCCTGTGGAACACAGCTACATGCGGAAGTGCTTCCGC
TGCGCAGCTGATGCCCAGCACGGGCAAGATCCATGTGGCTTCTTGCCCAC
GTCGAGCTGTGTTGCATGTAGACAACCGGCATTTGCCCCCGTTGTCGATG
TTGTTATCGTGATTGCTCGGGAAATCAAGTTTTTCGGTAGGTGGACATCC
GCATTTTCACACCAATCGTGGTAAACTCACCGCATCCATTTTTCGCCTCG
CGACGGCGATTGCCGCCAACGTATCTATCTTCACCCCACCCTCGCAACTT
GCGAGATGCGCGCACACGATATCTCGTCCCGGCGGCTGTCACTCCAGTTT
CAGTGATCGCGGGTTGCTGCTCCCTCAACCCGCTACGCTGCATTTCGGCT
AGTGGTAGTAGCAACGGCACGTGTGCCGTGTGCAGCAGTGGCATTTTCAA
AACCTCGGGTGCGTGCATCGAATCATTCTCACAGAGCCCTGCCAAAAATT
GCAAGCATTCTAGAGTCCAGCTCGTTTTTATGGCAGTAGTACGATAGTGG
CGCGAAAGAAAGCCGTAGCGGAGTTCCCAGCCGACGGTTGCGCGCCCTCC
GCATGCTTTTCGAAGAATACTCCAAGATATTAACATGTCACCACGTGAGA
TACCACCCCCCCCTGAAGGTCGAACGACCACAGCAAGAAGAGAGCCGCTG
CCGAAGGCGCGGCATTGGAAAGGAAATATCTAAACCAATCCAAAGCCCCA
TCGGTCGGTACTGCTGTCTGTCACCCTAACTGATGTGGAGAAATCTAGCT
GCAAAAAGTTGTCCAGAGGGGGTGAGGTAATCTTGTGCGGCTTAAGGTAT
ACCCAAACTGGTATATGCGACGTACGCGTAGGCAAGATCGGAGTCCTTGG
ATTGGTGATTGGGGAGGGAAAGAAGCCCAACGTACAAGCACACCGATCCG
CCGGCTGTGGGGCGCCCTGTACCCAAATGCCCGCTATACGTACCCGCTTG
TATGAGCTCGCTTTCCCGACCTTCTTCTATACCCACCCACATTCATCTGT
CGCATGAATACCGCTGTTCACCCTTCGCCCGCATCGGCGGGAAACCGCCC
TATCGCTTGTTTCCCGCAGGGCCCATCCCCGGACATGAAATTGACCTCCG
ACAGTTCTGGCATGCTGGGTCGTGGTGGAAGCGAAGCCGTCGCGAATGGC
AGTCGCAGCGCCATCGCCGCCACCGCGGGCGCGTCAACACTCCCAAGGGC
CGGGTTTTCGTCCGCCGCCGGTGGCCACTACCGGGTACCGACCCCGACAG
AACAGACCCCGTCCCCTCGCAAAGGCATGCCCAACGGCGATGGCGGGGGC
GTGTTTGCGTTCGGGGTAGATTCGCCGGATAGCAGCGGCCCTGACAAGCG
CGACGATCACGGGTACTTCGAGGCTAGCGGAGGAGGATCGAAAAGGGCCG
GCGGCTGCGGTGGCAATCTCGGAACGGGATACGAGCAAGGACACAGTGTT
TCCCCCGCTCGGAGGTGGCGCTCGGAGGATGCAGGCGGCGGAGAGAGCGA
CGACGAGGTGGAAGGAGGGGGGGTGGACGCCGGGTTTCGAGAAGAGCTGG
ACGTGTTCGCGTCGTCTTTGCGAAGGGACTTCGAGCGGAAGGTCTGTGTC
GATGTTGCTGCGAAGTTGTGAGGGTGGGAGTGATGGTTGGTGTTCTTTGC
ACCGTCTGAGTTTGCGGGCTTTGCGGGAGTTAGCCTTCCGGCGTGTAGAT
GTGTGTATGTGGCTCCTCTTGCTTGTGGTCTACCGTAGGTGGTTGTAGAT
GAAACGTCCCGTTGGGCCAGGTTTCAAAGCTGGATTACTCCCCAGCAAGG
GTGGTAGCGCCGAAAATTGCGACGTTGGAGCCTGTTCGTCGAGAGCTTTT
CGAAAACGTCTCGTTTGCTTTATGGGGAGCATCCTTTCCGTCGTGGAGTA
ATCGGTGCGGAGTGTGTAGTATCCTGTGTCTCCTACGGTACTCTGCTCAG
TATGTACAAGAGCTCGCACGTATGGCTTGTATGTACACTTGTGCTGTACG
TGTTTTTTTTCGTCTTTCGCCAGGCTTGTGAGAGCTTCAGCGCCGACGCT
TGTGTGATTAGATGGCCAGCGTATTGTCGCGGAAGACAGCGATGAAAATG
TCTGCTGTTCCCTCCAAATTGCGTCGCCCAACCAACTTGGCAGCTGATGG
TGACGGCGAGAGATGGGCTGGCGGCGGCCTGCGAGAGAGAGCGGAGCGCG
GGGCGCTTGCGGCTGGAGGCGCAGAGGAGGCACAGCAGCGAAGAGATCCT
TCACCTCGAGGGTGAAGGGAGGCGGTTGAAGGCGGAGGTGGCCAGGCTTC
GGAGGTGATTGCCGTGCTGCGCAGCAGCTGTGGGTGCTTCGTTTTTTTTA
GTAAACATAAATTCTGGACAATGTATATACCGGCTAAGTTAGGGCCTGCG
TGCCCCCTCCCTGACCTTGTTTCATACAATAGTATAGTAGCCTTACCTTC
GTTGTGTAGGCAGCTGGGCG
back to top

Coding sequence (CDS) from alignment at chr_00:36544..39463-

>Ec-00_000050.3 ID=Ec-00_000050.3|Name=Ec-00_000050.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=753bp|location=Sequence derived from alignment at chr_00:36544..39463- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGAATACCGCTGTTCACCCTTCGCCCGCATCGGCGGGAAACCGCCCTAT
CGCTTGTTTCCCGCAGGGCCCATCCCCGGACATGAAATTGACCTCCGACA
GTTCTGGCATGCTGGGTCGTGGTGGAAGCGAAGCCGTCGCGAATGGCAGT
CGCAGCGCCATCGCCGCCACCGCGGGCGCGTCAACACTCCCAAGGGCCGG
GTTTTCGTCCGCCGCCGGTGGCCACTACCGGGTACCGACCCCGACAGAAC
AGACCCCGTCCCCTCGCAAAGGCATGCCCAACGGCGATGGCGGGGGCGTG
TTTGCGTTCGGGGTAGATTCGCCGGATAGCAGCGGCCCTGACAAGCGCGA
CGATCACGGGTACTTCGAGGCTAGCGGAGGAGGATCGAAAAGGGCCGGCG
GCTGCGGTGGCAATCTCGGAACGGGATACGAGCAAGGACACAGTGTTTCC
CCCGCTCGGAGGTGGCGCTCGGAGGATGCAGGCGGCGGAGAGAGCGACGA
CGAGGTGGAAGGAGGGGGGGTGGACGCCGGGTTTCGAGAAGAGCTGGACG
TGTTCGCGTCGTCTTTGCGAAGGGACTTCGAGCGGAAGCTGATGGTGACG
GCGAGAGATGGGCTGGCGGCGGCCTGCGAGAGAGAGCGGAGCGCGGGGCG
CTTGCGGCTGGAGGCGCAGAGGAGGCACAGCAGCGAAGAGATCCTTCACC
TCGAGGGTGAAGGGAGGCGGTTGAAGGCGGAGGTGGCCAGGCTTCGGAGG
TGA
back to top
Synonyms
The feature 'Ec-00_000050.3' has the following synonyms
Synonym
Esi1007_0001
Esi_1007_0001