prot_Ecto-sp6_S_contig99.18839.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp6_S_contig99.18839.1
Unique Nameprot_Ecto-sp6_S_contig99.18839.1
Typepolypeptide
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length412
Homology
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BLAST of mRNA_Ecto-sp6_S_contig99.18839.1 vs. uniprot
Match: D8LSZ4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSZ4_ECTSI)

HSP 1 Score: 622 bits (1604), Expect = 6.960e-222
Identity = 394/411 (95.86%), Postives = 398/411 (96.84%), Query Frame = 0 
Query:    1 MRRARRRCWSVTLALLLTYAVVSTVVFLQPPLHPVGPSTKPSTTISGNQRTRQQPRLRSASGADSIVFVALGPAARSASLLYALTSLREEGGWDGQVHVIVEREDDLACLSSYLRQSVTAIAVAPPPSPSSPGGSLHSGGGDTRGVVQNAKMAKMKLLDLLPPSVERVVYVDCDVVTQRPLGLFLDAVAREWDELDRKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVMIFADAGGHTVPVCRGCDRAHSGVVALARGHSERCLKLWHDAFEGDGAGNGGTSTDQEALDAALGEGSGCEAIMMGRRHLSFMKDAFVMAGLTRTSTFGHYTGLLHPKTLGKVYRRFYEWALGMSFEEWGQGEIQGCAVE 411
            MRRARRRCWSV LALLLTYAVVSTV+FL+PPLHPVGPSTKPSTTISGNQRTRQQPRLRSASGADSIVFVALGPAARSASLLYALTSLREEGGWDGQVHV+VEREDDLACLSSYLRQSVTAIA+AP       GGSLHSGGGDTRGVVQNAKMAKMKLLDLLPPSVERVVYVDCDVVTQRPLG FLDAVAREWDELDRKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   TVMIFADAGGHTVPVCRGCDRAHSGVVALARGHSERCLKLWHDAFEGDGAGNGGTSTDQEALDAALGEGSGCEAIMMGR HLSFMKDAFVMAGLTRTSTFGHYTGLLHPKTLGKVYRRFYEWALGMSFEEWGQGEIQGCAVE
Sbjct:    1 MRRARRRCWSVALALLLTYAVVSTVLFLRPPLHPVGPSTKPSTTISGNQRTRQQPRLRSASGADSIVFVALGPAARSASLLYALTSLREEGGWDGQVHVVVEREDDLACLSSYLRQSVTAIAIAPXXXXXXXGGSLHSGGGDTRGVVQNAKMAKMKLLDLLPPSVERVVYVDCDVVTQRPLGPFLDAVAREWDELDRKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---TVMIFADAGGHTVPVCRGCDRAHSGVVALARGHSERCLKLWHDAFEGDGAGNGGTSTDQEALDAALGEGSGCEAIMMGRWHLSFMKDAFVMAGLTRTSTFGHYTGLLHPKTLGKVYRRFYEWALGMSFEEWGQGEIQGCAVE 408
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig99.18839.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSZ4_ECTSI6.960e-22295.86Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR037065Potassium channel, voltage dependent, Kv1.4, tandem inactivation domain superfamilyGENE3D1.20.5.600coord: 169..233
e-value: 5.3E-5
score: 25.4
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 20..28
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 29..411
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..7
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 8..19
NoneNo IPR availableSIGNALP_EUKSignalP-TMSignalP-TMcoord: 1..24
score: 0.588
NoneNo IPR availableTMHMMTMhelixcoord: 7..29

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig99contigEcto-sp6_S_contig99:260449..261684 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig99.18839.1mRNA_Ecto-sp6_S_contig99.18839.1Ectocarpus species6 EcLAC_371mRNAEcto-sp6_S_contig99 260449..261684 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp6_S_contig99.18839.1 ID=prot_Ecto-sp6_S_contig99.18839.1|Name=mRNA_Ecto-sp6_S_contig99.18839.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=412bp
MRRARRRCWSVTLALLLTYAVVSTVVFLQPPLHPVGPSTKPSTTISGNQR
TRQQPRLRSASGADSIVFVALGPAARSASLLYALTSLREEGGWDGQVHVI
VEREDDLACLSSYLRQSVTAIAVAPPPSPSSPGGSLHSGGGDTRGVVQNA
KMAKMKLLDLLPPSVERVVYVDCDVVTQRPLGLFLDAVAREWDELDRKAA
AAAAAAAAAATAAVEGPATTRSPPKKGVVNSRLRGGRDDGNEVFAPPPPQ
PMSGDGDTNRRSPPPPPPSTVMIFADAGGHTVPVCRGCDRAHSGVVALAR
GHSERCLKLWHDAFEGDGAGNGGTSTDQEALDAALGEGSGCEAIMMGRRH
LSFMKDAFVMAGLTRTSTFGHYTGLLHPKTLGKVYRRFYEWALGMSFEEW
GQGEIQGCAVE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR037065K_chnl_volt-dep_Kv1.4_TID_sf