mRNA_Ecto-sp6_S_contig97.18727.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp6_S_contig97.18727.1
Unique Name	mRNA_Ecto-sp6_S_contig97.18727.1
Type	mRNA
Organism	Ectocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)

Homology

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BLAST of mRNA_Ecto-sp6_S_contig97.18727.1 vs. uniprot
Match: A0A6H5KI39_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI39_9PHAE)

HSP 1 Score: 531 bits (1369), Expect = 2.590e-190
Identity = 245/262 (93.51%), Postives = 250/262 (95.42%), Query Frame = 1

Query:    1 MHKTDHTIPPKDALEKGRYLWAPRKERSDKMDERVMGLARRFWHSDDVSRASGDSGERSMWRPSKKAGEEYHPRRQLMVAGDQVWRKFLKWPEYLGLKAELLREDSSFTDPGRTVFLSTRCGCLVEPKVSQCACQIHTQQGLYLKAFEMLMPAIHANCECTCKWCDGSGCGKWMAMCKDLHSFSEALACEKVDFLAED*GSRFEHWGRKPACVAMECPECGFGNPGGIPMNCDALGFMADRVVGWLRFEDQVMEDGKVHKKQ 786
            MHKTDHTIPPKDALEKGRYLWAPRKER+DKMDERVM LARRFWHSDD+SRASGDSG  ++WRPSKKAGEEYHPRRQLMVAGDQVWRKFLKWPEYLGLKAELLREDSSFTDPGRT+FLSTRCGCLVEPKVSQCACQIHTQQGLY KAFEMLMPAIHANCECTC WCDGSGCGKWMAMCKDLHSFSEALACEK  FLAE  G RFEHWGRKPACVAMECPE GFGNPGGIPMNCDALG MADRVVGWLRFEDQVMEDGKVHKKQ
Sbjct:    1 MHKTDHTIPPKDALEKGRYLWAPRKERTDKMDERVMDLARRFWHSDDISRASGDSGTEAVWRPSKKAGEEYHPRRQLMVAGDQVWRKFLKWPEYLGLKAELLREDSSFTDPGRTMFLSTRCGCLVEPKVSQCACQIHTQQGLYHKAFEMLMPAIHANCECTCNWCDGSGCGKWMAMCKDLHSFSEALACEKAGFLAEGRGGRFEHWGRKPACVAMECPEYGFGNPGGIPMNCDALGSMADRVVGWLRFEDQVMEDGKVHKKQ 262

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BLAST of mRNA_Ecto-sp6_S_contig97.18727.1 vs. uniprot
Match: A0A6H5KT99_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT99_9PHAE)

HSP 1 Score: 533 bits (1373), Expect = 2.540e-182
Identity = 245/263 (93.16%), Postives = 254/263 (96.58%), Query Frame = 1

Query:    1 MHKTDHTIPPKDALEKGRYLWAPRKERSDKMDERVMGLARRFWHSDDVSRASGDSGERSMWRPSKKAGEEYHPRRQLMVAGDQVWRKFLKWPEYLGLKAELLREDSSFTDPGRTVFLSTRCGCLVEPKVSQCACQIHTQQGLYLKAFEMLMPAIHANCECTCKWCDG-SGCGKWMAMCKDLHSFSEALACEKVDFLAED*GSRFEHWGRKPACVAMECPECGFGNPGGIPMNCDALGFMADRVVGWLRFEDQVMEDGKVHKKQ 786
            MH+TDHTIPP++ALEKGRYLWAPRKERSDKMDERVMGLARRFWHSDD+SRASGDSG ++MWRPSKKAGEEYHPRRQLMVAGDQVW KFLKWPEYLGLKAELLRED+SFTDPGRT+FLSTRCGCLVEPKVSQCACQIHTQQGLYLKAFEMLMPAIHANC+CTCKWCDG SGCGKWMAMCKDLHSFSEALACEKVDFL ED G RFEHWGRKPACVAMEC ECGFGNPGGIPMNCDALG MADRVVGWLRF DQVMEDGKVHKKQ
Sbjct:  266 MHRTDHTIPPQEALEKGRYLWAPRKERSDKMDERVMGLARRFWHSDDISRASGDSGTKAMWRPSKKAGEEYHPRRQLMVAGDQVWHKFLKWPEYLGLKAELLREDNSFTDPGRTLFLSTRCGCLVEPKVSQCACQIHTQQGLYLKAFEMLMPAIHANCDCTCKWCDGGSGCGKWMAMCKDLHSFSEALACEKVDFLEEDRGGRFEHWGRKPACVAMECSECGFGNPGGIPMNCDALGSMADRVVGWLRFADQVMEDGKVHKKQ 528

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BLAST of mRNA_Ecto-sp6_S_contig97.18727.1 vs. uniprot
Match: A0A6H5K491_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K491_9PHAE)

HSP 1 Score: 516 bits (1330), Expect = 9.690e-180
Identity = 239/263 (90.87%), Postives = 251/263 (95.44%), Query Frame = 1

Query:    1 MHKTDHTIPPKDALEKGRYLWAPRKERSDKMDERVMGLARRFWHSDDVSRASGDSGERSMWRPSKKAGEEYHPRRQLMVAGDQVWRKFLKWPEYLGLKAELLREDSSFTDPGRTVFLSTRCGCLVEPKVSQCACQIHTQQGLYLKAFEMLMPAIHANCECTCKWCDG-SGCGKWMAMCKDLHSFSEALACEKVDFLAED*GSRFEHWGRKPACVAMECPECGFGNPGGIPMNCDALGFMADRVVGWLRFEDQVMEDGKVHKKQ 786
            MH+TDHTIPP++ALEKGRYLWAPRKERSDKMDERVMGLARRFWHSDD+SRASGDSG ++MWRPSKKAGEEYHPRRQLMVAGDQVW KFLKWPEYLGLKAELLREDSSFTDPGRT+FLSTRCGCLVEPK+S CACQIHTQQGLYLK  EMLMPA+H+NC+CTCK CDG SGCGKWMAMCKDLHSFSEALACEKVDFL ED G +FEHWGRKPACVAMEC ECGFGNPGGIPMNCDALG MADRVVGWLRFEDQVMEDGKVHKKQ
Sbjct:    1 MHRTDHTIPPQEALEKGRYLWAPRKERSDKMDERVMGLARRFWHSDDISRASGDSGTKAMWRPSKKAGEEYHPRRQLMVAGDQVWHKFLKWPEYLGLKAELLREDSSFTDPGRTLFLSTRCGCLVEPKISPCACQIHTQQGLYLKV-EMLMPAMHSNCDCTCKRCDGGSGCGKWMAMCKDLHSFSEALACEKVDFLEEDRGGKFEHWGRKPACVAMECSECGFGNPGGIPMNCDALGSMADRVVGWLRFEDQVMEDGKVHKKQ 262

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BLAST of mRNA_Ecto-sp6_S_contig97.18727.1 vs. uniprot
Match: A0A6H5JWW3_9PHAE (MULE domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW3_9PHAE)

HSP 1 Score: 533 bits (1373), Expect = 6.160e-176
Identity = 245/263 (93.16%), Postives = 254/263 (96.58%), Query Frame = 1

Query:    1 MHKTDHTIPPKDALEKGRYLWAPRKERSDKMDERVMGLARRFWHSDDVSRASGDSGERSMWRPSKKAGEEYHPRRQLMVAGDQVWRKFLKWPEYLGLKAELLREDSSFTDPGRTVFLSTRCGCLVEPKVSQCACQIHTQQGLYLKAFEMLMPAIHANCECTCKWCDG-SGCGKWMAMCKDLHSFSEALACEKVDFLAED*GSRFEHWGRKPACVAMECPECGFGNPGGIPMNCDALGFMADRVVGWLRFEDQVMEDGKVHKKQ 786
            MH+TDHTIPP++ALEKGRYLWAPRKERSDKMDERVMGLARRFWHSDD+SRASGDSG ++MWRPSKKAGEEYHPRRQLMVAGDQVW KFLKWPEYLGLKAELLRED+SFTDPGRT+FLSTRCGCLVEPKVSQCACQIHTQQGLYLKAFEMLMPAIHANC+CTCKWCDG SGCGKWMAMCKDLHSFSEALACEKVDFL ED G RFEHWGRKPACVAMEC ECGFGNPGGIPMNCDALG MADRVVGWLRF DQVMEDGKVHKKQ
Sbjct:  890 MHRTDHTIPPQEALEKGRYLWAPRKERSDKMDERVMGLARRFWHSDDISRASGDSGTKAMWRPSKKAGEEYHPRRQLMVAGDQVWHKFLKWPEYLGLKAELLREDNSFTDPGRTLFLSTRCGCLVEPKVSQCACQIHTQQGLYLKAFEMLMPAIHANCDCTCKWCDGGSGCGKWMAMCKDLHSFSEALACEKVDFLEEDRGGRFEHWGRKPACVAMECSECGFGNPGGIPMNCDALGSMADRVVGWLRFADQVMEDGKVHKKQ 1152

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BLAST of mRNA_Ecto-sp6_S_contig97.18727.1 vs. uniprot
Match: A0A6H5JE40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE40_9PHAE)

HSP 1 Score: 384 bits (985), Expect = 1.230e-133
Identity = 177/189 (93.65%), Postives = 186/189 (98.41%), Query Frame = 1

Query:    1 MHKTDHTIPPKDALEKGRYLWAPRKERSDKMDERVMGLARRFWHSDDVSRASGDSGERSMWRPSKKAGEEYHPRRQLMVAGDQVWRKFLKWPEYLGLKAELLREDSSFTDPGRTVFLSTRCGCLVEPKVSQCACQIHTQQGLYLKAFEMLMPAIHANCECTCKWCDG-SGCGKWMAMCKDLHSFSEALA 564
            MH+TDHTIPP++ALEKGRYLWAPRKERSDKMDERVMGLARRFWHSDD+SRASGDSG ++MWRPSKKAGEEYHPRRQLMVAGDQVWRKFLKWPEYLGLKAELLREDSSFTDPGRT+FLSTRCGCLVEPKVSQCACQIHTQQGLYLKAFEMLMPA+HANC+CTCKWCDG SGCGKWMAMCK LHSFSEALA
Sbjct:    1 MHRTDHTIPPQEALEKGRYLWAPRKERSDKMDERVMGLARRFWHSDDISRASGDSGTKAMWRPSKKAGEEYHPRRQLMVAGDQVWRKFLKWPEYLGLKAELLREDSSFTDPGRTLFLSTRCGCLVEPKVSQCACQIHTQQGLYLKAFEMLMPAMHANCDCTCKWCDGGSGCGKWMAMCKYLHSFSEALA 189

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BLAST of mRNA_Ecto-sp6_S_contig97.18727.1 vs. uniprot
Match: A0A6H5KY26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY26_9PHAE)

HSP 1 Score: 380 bits (976), Expect = 3.920e-127
Identity = 185/240 (77.08%), Postives = 190/240 (79.17%), Query Frame = 1

Query:  178 MWRPSKKAGEEYHPRRQLMVAGDQVWRKFLKWPEYLGLKAELLREDSSFTDPGRTVFLSTRCG-----------------------------------CL-VEPKVSQCACQIHTQQGLYLKAFEMLMPAIHANCECTCKWCDG-SGCGKWMAMCKDLHSFSEALACEKVDFLAED*GSRFEHWGRKPACVAMECPECGFGNPGGIPMNCDALGFMADRVVGWLRFEDQVMEDGKVHKKQ 786
            MWRPSKKAGEEY PRRQLMVAGDQ WRKFLKWPEYLGLKAELLRED+SFTDPGRT+FLSTRCG                                   C+ VEPKVSQCACQIHTQQGLYLKAFEMLMPA+HANC+CTCKWCDG SGCGKWMAMCKDLHSFSEAL CEKVD L ED G RFEHWG KPACVAMEC EC FGNP  IPMNCDALG MADRVVGWLRFEDQVMEDGKVHKKQ
Sbjct:    1 MWRPSKKAGEEYQPRRQLMVAGDQAWRKFLKWPEYLGLKAELLREDNSFTDPGRTLFLSTRCGDRSSVMDSSAVSPPQEDGLFADPLSSFLSVSTVRLCVTVEPKVSQCACQIHTQQGLYLKAFEMLMPAMHANCDCTCKWCDGGSGCGKWMAMCKDLHSFSEALDCEKVDCLEEDRGGRFEHWGGKPACVAMECSECRFGNPDDIPMNCDALGSMADRVVGWLRFEDQVMEDGKVHKKQ 240

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BLAST of mRNA_Ecto-sp6_S_contig97.18727.1 vs. uniprot
Match: A0A6H5KXG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXG9_9PHAE)

HSP 1 Score: 371 bits (952), Expect = 1.420e-122
Identity = 169/186 (90.86%), Postives = 174/186 (93.55%), Query Frame = 1

Query:  232 MVAGDQVWRKFLKWPEYLGLKAELLREDSSFTDPGRTVFLSTRCGCLVEPKVSQCACQIHTQQGLYLKAFEMLMPAIHANCECTCKWCDG-SGCGKWMAMCKDLHSFSEALACEKVDFLAED*GSRFEHWGRKPACVAMECPECGFGNPGGIPMNCDALGFMADRVVGWLRFEDQVMEDGKVHKKQ 786
            MVAGDQVW KFLKWPEY+GLKAELLREDSSFTDPGRT+FLSTRCGC VEPKVS+CACQ HTQQG+ LKAFEMLMPA HANC+CTCKWCDG SGCGKWMAMCKDLHSFSEALACEKVDFL ED G RFEHWGRKPACVAMEC ECGFGNPGGIPMNCDALG MADRVVGWLRF DQVMEDGKVHKKQ
Sbjct:    1 MVAGDQVWHKFLKWPEYMGLKAELLREDSSFTDPGRTLFLSTRCGCSVEPKVSKCACQTHTQQGIDLKAFEMLMPATHANCDCTCKWCDGGSGCGKWMAMCKDLHSFSEALACEKVDFLEEDRGGRFEHWGRKPACVAMECSECGFGNPGGIPMNCDALGSMADRVVGWLRFADQVMEDGKVHKKQ 186

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BLAST of mRNA_Ecto-sp6_S_contig97.18727.1 vs. uniprot
Match: A0A6H5JF90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF90_9PHAE)

HSP 1 Score: 347 bits (890), Expect = 4.220e-114
Identity = 163/262 (62.21%), Postives = 190/262 (72.52%), Query Frame = 1

Query:    1 MHKTDHTIPPKDALEKGRYLWAPRKERSDKMDERVMGLARRFWHSDDVSRASGDSGERSMWRPSKKAGEEYHPRRQLMVAGDQVWRKFLKWPEYLGLKAELLREDSSFTDPGRTVFLSTRCGCLVEPKVSQCACQIHTQQGLYLKAFEMLMPAIHANCECTCKWCDGSGCGKWMAMCKDLHSFSEALACEKVDFLAED*GSRFEHWGRKPACVAMECPECGFGNPGGIPMNCDALGFMADRVVGWLRFEDQVMEDGKVHKKQ 786
            MH T+H I PK A  +G Y++  RK RSD  +  VM LAR FWHSDDVSRA+G+SG+  M++ SKK     HPRRQLM  GD VWR FL+   YL LK+ LL +DS+FTDPGRT FLSTRCGCLV+P  SQCACQIHTQQ LYL+A   LM +IH +C+C C WCD  GC +W  MC+DL  FS+ALACEKV+ L  D    FE WGRKPAC AM+C ECGFG PGGIP NC A+    +RVV W+RFEDQ M DGKVHKKQ
Sbjct:  255 MHNTNHDIAPKIAASEGCYVYNERKTRSDVTNPEVMALARAFWHSDDVSRATGNSGK-DMYKESKKRDAPSHPRRQLMHKGDSVWRMFLESRRYLALKSRLLEQDSNFTDPGRTTFLSTRCGCLVDPTASQCACQIHTQQTLYLEALSFLMGSIHQDCDCECNWCDDLGCKRWSVMCQDLSKFSDALACEKVNLLEGDSDGGFEFWGRKPACAAMKCSECGFGKPGGIPTNCTAIAKNRERVVAWIRFEDQTMPDGKVHKKQ 515

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BLAST of mRNA_Ecto-sp6_S_contig97.18727.1 vs. uniprot
Match: A0A6H5K7E6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7E6_9PHAE)

HSP 1 Score: 347 bits (890), Expect = 1.030e-109
Identity = 163/262 (62.21%), Postives = 190/262 (72.52%), Query Frame = 1

Query:    1 MHKTDHTIPPKDALEKGRYLWAPRKERSDKMDERVMGLARRFWHSDDVSRASGDSGERSMWRPSKKAGEEYHPRRQLMVAGDQVWRKFLKWPEYLGLKAELLREDSSFTDPGRTVFLSTRCGCLVEPKVSQCACQIHTQQGLYLKAFEMLMPAIHANCECTCKWCDGSGCGKWMAMCKDLHSFSEALACEKVDFLAED*GSRFEHWGRKPACVAMECPECGFGNPGGIPMNCDALGFMADRVVGWLRFEDQVMEDGKVHKKQ 786
            MH T+H I PK A  +G Y++  RK RSD  +  VM LAR FWHSDDVSRA+G+SG+  M++ SKK     HPRRQLM  GD VWR FL+   YL LK+ LL +DS+FTDPGRT FLSTRCGCLV+P  SQCACQIHTQQ LYL+A   LM +IH +C+C C WCD  GC +W  MC+DL  FS+ALACEKV+ L  D    FE WGRKPAC AM+C ECGFG PGGIP NC A+    +RVV W+RFEDQ M DGKVHKKQ
Sbjct:  255 MHNTNHDIAPKIAASEGCYVYNERKTRSDVTNPEVMALARAFWHSDDVSRATGNSGK-DMYKESKKRDAPSHPRRQLMHKGDSVWRMFLESRRYLALKSRLLEQDSNFTDPGRTTFLSTRCGCLVDPTASQCACQIHTQQTLYLEALSFLMGSIHQDCDCECNWCDDLGCKRWSVMCQDLSKFSDALACEKVNLLEGDSDGGFEFWGRKPACAAMKCSECGFGKPGGIPTNCTAIAKNRERVVAWIRFEDQTMPDGKVHKKQ 515

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BLAST of mRNA_Ecto-sp6_S_contig97.18727.1 vs. uniprot
Match: A0A6H5JG47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG47_9PHAE)

HSP 1 Score: 249 bits (637), Expect = 3.820e-81
Identity = 114/123 (92.68%), Postives = 121/123 (98.37%), Query Frame = 1

Query:    1 MHKTDHTIPPKDALEKGRYLWAPRKERSDKMDERVMGLARRFWHSDDVSRASGDSGERSMWRPSKKAGEEYHPRRQLMVAGDQVWRKFLKWPEYLGLKAELLREDSSFTDPGRTVFLSTRCGC 369
            MH+TDHTIPP++ALEKGRYLWAPRKERSDKMDERVMGLARRFWHSDD+SRASGDSG ++MWRPSKKAGEEYHPRRQLMVAGDQVWRKFLKWPEYLGLKAELLREDSSF DPGRT+FLSTRCGC
Sbjct:    1 MHRTDHTIPPQEALEKGRYLWAPRKERSDKMDERVMGLARRFWHSDDISRASGDSGTKAMWRPSKKAGEEYHPRRQLMVAGDQVWRKFLKWPEYLGLKAELLREDSSFADPGRTLFLSTRCGC 123

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp6_S_contig97.18727.1 vs. uniprot

BLAST of mRNA_Ecto-sp6_S_contig97.18727.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KI39_9PHAE	2.590e-190	93.51	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KT99_9PHAE	2.540e-182	93.16	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K491_9PHAE	9.690e-180	90.87	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JWW3_9PHAE	6.160e-176	93.16	MULE domain-containing protein n=2 Tax=Ectocarpus ...	[more]
A0A6H5JE40_9PHAE	1.230e-133	93.65	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KY26_9PHAE	3.920e-127	77.08	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KXG9_9PHAE	1.420e-122	90.86	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JF90_9PHAE	4.220e-114	62.21	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K7E6_9PHAE	1.030e-109	62.21	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JG47_9PHAE	3.820e-81	92.68	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp6_S_contig97	contig	Ecto-sp6_S_contig97:504081..505204 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species6 EcLAC_371 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Model size	786
Hectar predicted targeting category	other localisation
Exons	3
Cds size	597

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1682350599.5691872-CDS-Ecto-sp6_S_contig97:504080..504255	1682350599.5691872-CDS-Ecto-sp6_S_contig97:504080..504255	Ectocarpus species6 EcLAC_371	CDS	Ecto-sp6_S_contig97 504081..504255 +
1682350599.5771148-CDS-Ecto-sp6_S_contig97:504418..504616	1682350599.5771148-CDS-Ecto-sp6_S_contig97:504418..504616	Ectocarpus species6 EcLAC_371	CDS	Ecto-sp6_S_contig97 504419..504616 +
1682350599.5849142-CDS-Ecto-sp6_S_contig97:504791..505015	1682350599.5849142-CDS-Ecto-sp6_S_contig97:504791..505015	Ectocarpus species6 EcLAC_371	CDS	Ecto-sp6_S_contig97 504792..505015 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1682350599.5926993-UTR-Ecto-sp6_S_contig97:505015..505204	1682350599.5926993-UTR-Ecto-sp6_S_contig97:505015..505204	Ectocarpus species6 EcLAC_371	UTR	Ecto-sp6_S_contig97 505016..505204 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp6_S_contig97.18727.1	prot_Ecto-sp6_S_contig97.18727.1	Ectocarpus species6 EcLAC_371	polypeptide	Ecto-sp6_S_contig97 504081..505015 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp6_S_contig97:504081..505204+
coding sequence from alignment at Ecto-sp6_S_contig97:504081..505204+

protein sequence of mRNA_Ecto-sp6_S_contig97.18727.1

>prot_Ecto-sp6_S_contig97.18727.1 ID=prot_Ecto-sp6_S_contig97.18727.1|Name=mRNA_Ecto-sp6_S_contig97.18727.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=199bp
MHKTDHTIPPKDALEKGRYLWAPRKERSDKMDERVMGLARRFWHSDDVSR
ASGDSGERSMWRPSKKAGEEYHPRRQLMVAGDQVWRKFLKWPEYLGLKAE
LLREDSSFTDPGRTVFLSTRCGCLVEPKVSQCACQIHTQQGLYLKAFEML
MPAIHANCECTCKWCDGSGCGKWMAMCKDLHSFSEALACEKVDFLAED*

mRNA from alignment at Ecto-sp6_S_contig97:504081..505204+

Legend: CDSpolypeptideUTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp6_S_contig97.18727.1 ID=mRNA_Ecto-sp6_S_contig97.18727.1|Name=mRNA_Ecto-sp6_S_contig97.18727.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1124bp|location=Sequence derived from alignment at Ecto-sp6_S_contig97:504081..505204+ (Ectocarpus species6 EcLAC_371)
ATGCACAAGACTGACCACACCATACCTCCAAAGGACGCTTTAGAGAAGGG
GAGATATCTCTGGGCTCCGCGCAAAGAAAGGAGCGACAAGATGGACGAAC
GTGTCATGGGTTTGGCGAGGAGGTTCTGGCACTCTGACGACGTTTCTCGT
GCGTCGGGAGACTCAGGTGAGCGCTGTCAAAACGTGTCGTTGCAGTCCGG
GGATGCTCCGTTTGCCGTTGAGTTTTTAGTCAACTGCACTTGTTTGTACC
CCTTTCGTGCTGCCTTGGGTGTGGCTTAACTGTTGCTGCTACACTGCACG
CGGCCGTTTTTTTCGTACACCCCGTGTGGGTACGAAAGCTATGTGGAGGC
CATCCAAGAAGGCAGGGGAGGAGTATCACCCCCGTAGGCAGCTCATGGTC
GCGGGGGATCAAGTATGGCGCAAGTTTCTGAAGTGGCCGGAGTACCTGGG
GCTTAAGGCGGAGCTGCTGAGGGAAGACAGCAGCTTCACGGACCCTGGGC
GGACGGTGTTCCTCTCGACGCGGTGTGGGTGTTTAGGTGGGTGGGCGTGA
GGGGAGCAGCTCCGTTCTTTTTTCACTTCGATAACGGCGTCATTATTGTT
CTAGCGTAATGGATTCTTCAGCTGTGTCACCGTCCCAGGGGGACGGCCTC
TTTGCTGACCTGTTGTGCTCCTTTCTGTCCGTTTCAACCGTTCGCTTCTG
GTGTCTTACAGTGGAACCGAAGGTATCGCAGTGTGCCTGCCAGATCCACA
CGCAGCAGGGGCTGTACCTTAAGGCATTCGAGATGTTGATGCCTGCAATA
CATGCCAACTGTGAGTGCACGTGCAAGTGGTGCGACGGGAGTGGTTGTGG
AAAGTGGATGGCCATGTGTAAAGATCTGCACAGCTTTTCGGAGGCTTTGG
CTTGCGAGAAGGTAGACTTTCTTGCGGAGGACTGAGGGAGTAGGTTTGAG
CACTGGGGGAGGAAGCCCGCATGCGTTGCGATGGAATGCCCCGAATGCGG
GTTTGGCAACCCAGGCGGCATCCCCATGAACTGCGATGCCCTGGGGTTTA
TGGCGGACAGAGTTGTCGGGTGGCTTCGATTCGAGGATCAAGTCATGGAG
GATGGGAAGGTGCACAAGAAGCAG

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig97:504081..505204+

>mRNA_Ecto-sp6_S_contig97.18727.1 ID=mRNA_Ecto-sp6_S_contig97.18727.1|Name=mRNA_Ecto-sp6_S_contig97.18727.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=597bp|location=Sequence derived from alignment at Ecto-sp6_S_contig97:504081..505204+ (Ectocarpus species6 EcLAC_371)
ATGCACAAGACTGACCACACCATACCTCCAAAGGACGCTTTAGAGAAGGG
GAGATATCTCTGGGCTCCGCGCAAAGAAAGGAGCGACAAGATGGACGAAC
GTGTCATGGGTTTGGCGAGGAGGTTCTGGCACTCTGACGACGTTTCTCGT
GCGTCGGGAGACTCAGGTGAGCGCTCTATGTGGAGGCCATCCAAGAAGGC
AGGGGAGGAGTATCACCCCCGTAGGCAGCTCATGGTCGCGGGGGATCAAG
TATGGCGCAAGTTTCTGAAGTGGCCGGAGTACCTGGGGCTTAAGGCGGAG
CTGCTGAGGGAAGACAGCAGCTTCACGGACCCTGGGCGGACGGTGTTCCT
CTCGACGCGGTGTGGGTGTTTAGTGGAACCGAAGGTATCGCAGTGTGCCT
GCCAGATCCACACGCAGCAGGGGCTGTACCTTAAGGCATTCGAGATGTTG
ATGCCTGCAATACATGCCAACTGTGAGTGCACGTGCAAGTGGTGCGACGG
GAGTGGTTGTGGAAAGTGGATGGCCATGTGTAAAGATCTGCACAGCTTTT
CGGAGGCTTTGGCTTGCGAGAAGGTAGACTTTCTTGCGGAGGACTGA