mRNA_Ecto-sp6_S_contig97.18728.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp6_S_contig97.18728.1
Unique Name	mRNA_Ecto-sp6_S_contig97.18728.1
Type	mRNA
Organism	Ectocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)

Homology

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BLAST of mRNA_Ecto-sp6_S_contig97.18728.1 vs. uniprot
Match: A0A6H5J993_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J993_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 1.740e-41
Identity = 87/124 (70.16%), Postives = 93/124 (75.00%), Query Frame = 2

Query:    2 TGISGSSKLSQFMGAEVQQEESSGVGVEVQTESGAPLVGGEKEVVANPQRWQADKSIVLTLPAVTKRYKLRVCQASCYCSN*LRCWGLRRLRPGQAVCGGGGYGVVKAVSGKHKVTRTSCGTGN 373
            TGISGSSK  QFMGAEVQ+EESSGVGVEVQ E+  PLVGGEKEVVANPQRWQAD+S VLTL AVTKRYKLRV QASC+ S            P +   G    G+VKAVSGKHKVTR SCG GN
Sbjct:  193 TGISGSSKQHQFMGAEVQEEESSGVGVEVQLENDVPLVGGEKEVVANPQRWQADESTVLTLLAVTKRYKLRVRQASCHRSK-CSVGAYNDCVPAKKYAGM--VGMVKAVSGKHKVTRASCGVGN 313

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BLAST of mRNA_Ecto-sp6_S_contig97.18728.1 vs. uniprot
Match: A0A6H5KT99_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT99_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 8.620e-39
Identity = 89/138 (64.49%), Postives = 94/138 (68.12%), Query Frame = 2

Query:    2 TGISGSSKLSQFMGAEVQQEESSGVGVEVQTESGAP-LVGGEKEVVANPQRWQADKSIVLTLPAVTKRYKLRVCQASCYCSN*LRCWGLRRLRPGQAVCGGGGY-------------GVVKAVSGKHKVTRTSCGTGN 373
            TGISGSSKL QFMGAEVQ+EESSGV VEVQ ESG P LVGGE EVV NP RWQAD+SIVLT+PAVTKRYKLRV QASCYCS                 C  G Y             G+VK VSGKHKVTRTSCG G+
Sbjct:  785 TGISGSSKLYQFMGAEVQEEESSGVSVEVQKESGVPPLVGGENEVVVNPLRWQADESIVLTVPAVTKRYKLRVRQASCYCSK----------------CSVGAYDDCVPAKKYEGMVGMVKDVSGKHKVTRTSCGVGD 906

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BLAST of mRNA_Ecto-sp6_S_contig97.18728.1 vs. uniprot
Match: A0A6H5JWW3_9PHAE (MULE domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW3_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 9.150e-39
Identity = 89/138 (64.49%), Postives = 94/138 (68.12%), Query Frame = 2

Query:    2 TGISGSSKLSQFMGAEVQQEESSGVGVEVQTESGAP-LVGGEKEVVANPQRWQADKSIVLTLPAVTKRYKLRVCQASCYCSN*LRCWGLRRLRPGQAVCGGGGY-------------GVVKAVSGKHKVTRTSCGTGN 373
            TGISGSSKL QFMGAEVQ+EESSGV VEVQ ESG P LVGGE EVV NP RWQAD+SIVLT+PAVTKRYKLRV QASCYCS                 C  G Y             G+VK VSGKHKVTRTSCG G+
Sbjct: 1409 TGISGSSKLYQFMGAEVQEEESSGVSVEVQKESGVPPLVGGENEVVVNPLRWQADESIVLTVPAVTKRYKLRVRQASCYCSK----------------CSVGAYDDCVPAKKYEGMVGMVKDVSGKHKVTRTSCGVGD 1530

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BLAST of mRNA_Ecto-sp6_S_contig97.18728.1 vs. uniprot
Match: A0A6H5KXK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXK6_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 1.150e-38
Identity = 97/178 (54.49%), Postives = 101/178 (56.74%), Query Frame = 2

Query:    2 TGISGSSKLSQFMGAEVQQEESSGVGVEVQTESGAPLVGGEKEVVANPQRWQADKSIVLTLPAVTKRYKLRVCQASCYCS----------------------N*LRCWGLR--------------RLRPGQAVC-----GGGGY-------------GVVKAVSGKHKVTRTSCGTGN 373
            TGISGSSKL QFMGAEVQ+EESSGVGVEVQ E G  LVGGEKEVV NPQRWQAD+S VLTLPAVTKRYKLRV QASCYCS                      N  R W                 +LR  QA C       G Y             G+VK VSGKHKVTR SCG GN
Sbjct:  182 TGISGSSKLYQFMGAEVQEEESSGVGVEVQKEDGVSLVGGEKEVVVNPQRWQADESTVLTLPAVTKRYKLRVRQASCYCSKCSVGAYDDCVPLVGGEKEVVANPQR-WQADESTVLTLPAVTKRYKLRVRQASCYCSKCSVGAYDDCVSAKKYAGMVGMVKTVSGKHKVTRASCGVGN 358

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BLAST of mRNA_Ecto-sp6_S_contig97.18728.1 vs. uniprot
Match: A0A6H5JJU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJU0_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 2.420e-38
Identity = 72/81 (88.89%), Postives = 75/81 (92.59%), Query Frame = 2

Query:    2 TGISGSSKLSQFMGAEVQQEESSGVGVEVQTESGAPLVGGEKEVVANPQRWQADKSIVLTLPAVTKRYKLRVCQASCYCSN 244
            TGISGSSKL QFMGAEVQ+EESSGVGVEVQTE+G PL GGEKEVVANPQRWQAD+S VLTLPAVTKRYKLRV QASCYCS 
Sbjct:  115 TGISGSSKLYQFMGAEVQEEESSGVGVEVQTENGVPLEGGEKEVVANPQRWQADESTVLTLPAVTKRYKLRVRQASCYCSK 195

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BLAST of mRNA_Ecto-sp6_S_contig97.18728.1 vs. uniprot
Match: A0A6H5K491_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K491_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 1.370e-35
Identity = 72/80 (90.00%), Postives = 75/80 (93.75%), Query Frame = 2

Query:    2 TGISGSSKLSQFMGAEVQQEESSGVGVEVQTESGAPLVGGEKEVVANPQRWQADKSIVLTLPAVTKRYKLRVCQASCYCS 241
            TGISGSSKL QFMGAEVQ+EESSGVGVEVQTE+G PLVGGEKEVVANPQRWQAD+S VLTLP VTKRYKLRV QASCYCS
Sbjct:  519 TGISGSSKLYQFMGAEVQEEESSGVGVEVQTENGVPLVGGEKEVVANPQRWQADESTVLTLPTVTKRYKLRVRQASCYCS 598

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BLAST of mRNA_Ecto-sp6_S_contig97.18728.1 vs. uniprot
Match: A0A6H5KM72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM72_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 3.060e-29
Identity = 77/124 (62.10%), Postives = 81/124 (65.32%), Query Frame = 2

Query:    2 TGISGSSKLSQFMGAEVQQEESSGVGVEVQTESGAPLVGGEKEVVANPQRWQADKSIVLTLPAVTKRYKLRVCQASCYCSN*LRCWGLRRLRPGQAVCGGGGYGVVKAVSGKHKVTRTSCGTGN 373
            TGISGSSKL QFMGAEVQ+EESSGVGVEVQ E+G  L               ADKS VLTLPAVTKRYKLRV QASCYCS            P +   G    G+VKAVSGKHKVTR SCG GN
Sbjct:  323 TGISGSSKLYQFMGAEVQEEESSGVGVEVQKENGVLL---------------ADKSTVLTLPAVTKRYKLRVRQASCYCSK-CSVGAYDDCVPAKKYAGM--VGMVKAVSGKHKVTRASCGVGN 428

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BLAST of mRNA_Ecto-sp6_S_contig97.18728.1 vs. uniprot
Match: A0A6H5KXG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXG9_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 3.450e-26
Identity = 64/81 (79.01%), Postives = 66/81 (81.48%), Query Frame = 2

Query:    2 TGISGSSKLSQFMGAEVQQEESSGVGVEVQTESGAPLVGGEKEVVANPQRWQADKSIVLTLPAVTKRYKLRVCQASCYCSN 244
            TGISGSSKL QFMGAEVQ+EESSGV VEVQ ESG         VVANPQRWQAD+SIV TLPAVTKRYKLRV QASCYCS 
Sbjct:  527 TGISGSSKLYQFMGAEVQEEESSGVSVEVQKESG---------VVANPQRWQADESIVRTLPAVTKRYKLRVRQASCYCSK 598

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BLAST of mRNA_Ecto-sp6_S_contig97.18728.1 vs. uniprot
Match: A0A6H5KR28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR28_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 8.800e-19
Identity = 65/121 (53.72%), Postives = 70/121 (57.85%), Query Frame = 2

Query:    2 TGISGSSKLSQFMGAEVQQEESSGVGVEVQTESGAPLVGGEKEVVANPQRWQADKSIVLTLPAVTKRYKLRVCQASCYCSN*L-----RCWGLRRLRPGQAVCGGGGYGVVKAVSGKHKVT 349
            TGISGSSKL QFMGAEVQQEESSGVGVE                        AD+SIVLTLPAVTKRY+LRV QASC CS         C+  R+          G  G+VKAVSGKHK T
Sbjct:  182 TGISGSSKLYQFMGAEVQQEESSGVGVE------------------------ADESIVLTLPAVTKRYELRVRQASCCCSKCSVGAYDDCFPARKYA--------GVVGMVKAVSGKHKAT 270

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BLAST of mRNA_Ecto-sp6_S_contig97.18728.1 vs. uniprot
Match: A0A6H5K6N6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6N6_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 1.200e-14
Identity = 40/50 (80.00%), Postives = 43/50 (86.00%), Query Frame = 1

Query:   97 ERGSPRRWRERGCSQPAEMAGGQINRSDASGCHEAIQATRLPGVVLLLEL 246
            E G P    ERGCS+PAEMAGG+INRSDASGCHEAIQATR PGVVLLLE+
Sbjct:  298 ENGIPLVGGERGCSEPAEMAGGRINRSDASGCHEAIQATRSPGVVLLLEV 347

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp6_S_contig97.18728.1 vs. uniprot

BLAST of mRNA_Ecto-sp6_S_contig97.18728.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12


Match Name	E-value	Identity	Description
A0A6H5J993_9PHAE	1.740e-41	70.16	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KT99_9PHAE	8.620e-39	64.49	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JWW3_9PHAE	9.150e-39	64.49	MULE domain-containing protein n=2 Tax=Ectocarpus ...	[more]
A0A6H5KXK6_9PHAE	1.150e-38	54.49	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JJU0_9PHAE	2.420e-38	88.89	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K491_9PHAE	1.370e-35	90.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KM72_9PHAE	3.060e-29	62.10	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KXG9_9PHAE	3.450e-26	79.01	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KR28_9PHAE	8.800e-19	53.72	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K6N6_9PHAE	1.200e-14	80.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp6_S_contig97	contig	Ecto-sp6_S_contig97:506160..506576 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species6 EcLAC_371 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	0
Model size	417
Hectar predicted targeting category	other localisation
Exons	1
Cds size	417

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1682350594.5389123-CDS-Ecto-sp6_S_contig97:506159..506576	1682350594.5389123-CDS-Ecto-sp6_S_contig97:506159..506576	Ectocarpus species6 EcLAC_371	CDS	Ecto-sp6_S_contig97 506160..506576 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp6_S_contig97.18728.1	prot_Ecto-sp6_S_contig97.18728.1	Ectocarpus species6 EcLAC_371	polypeptide	Ecto-sp6_S_contig97 506160..506576 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp6_S_contig97:506160..506576+
coding sequence from alignment at Ecto-sp6_S_contig97:506160..506576+

protein sequence of mRNA_Ecto-sp6_S_contig97.18728.1

>prot_Ecto-sp6_S_contig97.18728.1 ID=prot_Ecto-sp6_S_contig97.18728.1|Name=mRNA_Ecto-sp6_S_contig97.18728.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=139bp
DRHLWEFQAVPVHGSGGPAGGELGRRRRGADRERGSPRRWRERGCSQPAE
MAGGQINRSDASGCHEAIQATRLPGVVLLLELIAVLGLTTTASRPSSMRG
WWVWCGEGCVGQAQGYSDVLWYRELRGVRVARHVLVIDA

mRNA from alignment at Ecto-sp6_S_contig97:506160..506576+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp6_S_contig97.18728.1 ID=mRNA_Ecto-sp6_S_contig97.18728.1|Name=mRNA_Ecto-sp6_S_contig97.18728.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=417bp|location=Sequence derived from alignment at Ecto-sp6_S_contig97:506160..506576+ (Ectocarpus species6 EcLAC_371)
GACCGGCATCTCTGGGAGTTCCAAGCTGTCCCAGTTCATGGGAGCGGAGG
TCCAGCAGGAGGAGAGCTCGGGCGTAGGCGTAGAGGTGCAGACAGAGAGC
GGGGCTCCCCTCGTAGGTGGCGAGAAAGAGGTTGTAGCCAACCCGCAGAG
ATGGCAGGCGGACAAATCAATCGTTCTGACGCTTCCGGCTGTCACGAAGC
GATACAAGCTACGCGTTTGCCAGGCGTCGTGCTACTGCTCGAATTAATTG
CGGTGTTGGGGCTTACGACGACTGCGTCCCGGCCAAGCAGTATGCGGGGG
TGGTGGGTATGGTGTGGTGAAGGCTGTGTCGGGCAAGCACAAGGTTACTC
GGACGTCTTGTGGTACAGGGAATTGCGGGGTGTCCGTGTTGCACGTCATG
TTCTTGTGATTGACGCC

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig97:506160..506576+

>mRNA_Ecto-sp6_S_contig97.18728.1 ID=mRNA_Ecto-sp6_S_contig97.18728.1|Name=mRNA_Ecto-sp6_S_contig97.18728.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=417bp|location=Sequence derived from alignment at Ecto-sp6_S_contig97:506160..506576+ (Ectocarpus species6 EcLAC_371)
GACCGGCATCTCTGGGAGTTCCAAGCTGTCCCAGTTCATGGGAGCGGAGG
TCCAGCAGGAGGAGAGCTCGGGCGTAGGCGTAGAGGTGCAGACAGAGAGC
GGGGCTCCCCTCGTAGGTGGCGAGAAAGAGGTTGTAGCCAACCCGCAGAG
ATGGCAGGCGGACAAATCAATCGTTCTGACGCTTCCGGCTGTCACGAAGC
GATACAAGCTACGCGTTTGCCAGGCGTCGTGCTACTGCTCGAATTAATTG
CGGTGTTGGGGCTTACGACGACTGCGTCCCGGCCAAGCAGTATGCGGGGG
TGGTGGGTATGGTGTGGTGAAGGCTGTGTCGGGCAAGCACAAGGTTACTC
GGACGTCTTGTGGTACAGGGAATTGCGGGGTGTCCGTGTTGCACGTCATG
TTCTTGTGATTGACGCC