mRNA_Ecto-sp6_S_contig97.18728.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig97.18728.1
Unique NamemRNA_Ecto-sp6_S_contig97.18728.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig97.18728.1 vs. uniprot
Match: A0A6H5J993_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J993_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 1.740e-41
Identity = 87/124 (70.16%), Postives = 93/124 (75.00%), Query Frame = 2 
Query:    2 TGISGSSKLSQFMGAEVQQEESSGVGVEVQTESGAPLVGGEKEVVANPQRWQADKSIVLTLPAVTKRYKLRVCQASCYCSN*LRCWGLRRLRPGQAVCGGGGYGVVKAVSGKHKVTRTSCGTGN 373
            TGISGSSK  QFMGAEVQ+EESSGVGVEVQ E+  PLVGGEKEVVANPQRWQAD+S VLTL AVTKRYKLRV QASC+ S            P +   G    G+VKAVSGKHKVTR SCG GN
Sbjct:  193 TGISGSSKQHQFMGAEVQEEESSGVGVEVQLENDVPLVGGEKEVVANPQRWQADESTVLTLLAVTKRYKLRVRQASCHRSK-CSVGAYNDCVPAKKYAGM--VGMVKAVSGKHKVTRASCGVGN 313
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BLAST of mRNA_Ecto-sp6_S_contig97.18728.1 vs. uniprot
Match: A0A6H5KT99_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT99_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 8.620e-39
Identity = 89/138 (64.49%), Postives = 94/138 (68.12%), Query Frame = 2 
Query:    2 TGISGSSKLSQFMGAEVQQEESSGVGVEVQTESGAP-LVGGEKEVVANPQRWQADKSIVLTLPAVTKRYKLRVCQASCYCSN*LRCWGLRRLRPGQAVCGGGGY-------------GVVKAVSGKHKVTRTSCGTGN 373
            TGISGSSKL QFMGAEVQ+EESSGV VEVQ ESG P LVGGE EVV NP RWQAD+SIVLT+PAVTKRYKLRV QASCYCS                 C  G Y             G+VK VSGKHKVTRTSCG G+
Sbjct:  785 TGISGSSKLYQFMGAEVQEEESSGVSVEVQKESGVPPLVGGENEVVVNPLRWQADESIVLTVPAVTKRYKLRVRQASCYCSK----------------CSVGAYDDCVPAKKYEGMVGMVKDVSGKHKVTRTSCGVGD 906
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BLAST of mRNA_Ecto-sp6_S_contig97.18728.1 vs. uniprot
Match: A0A6H5JWW3_9PHAE (MULE domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW3_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 9.150e-39
Identity = 89/138 (64.49%), Postives = 94/138 (68.12%), Query Frame = 2 
Query:    2 TGISGSSKLSQFMGAEVQQEESSGVGVEVQTESGAP-LVGGEKEVVANPQRWQADKSIVLTLPAVTKRYKLRVCQASCYCSN*LRCWGLRRLRPGQAVCGGGGY-------------GVVKAVSGKHKVTRTSCGTGN 373
            TGISGSSKL QFMGAEVQ+EESSGV VEVQ ESG P LVGGE EVV NP RWQAD+SIVLT+PAVTKRYKLRV QASCYCS                 C  G Y             G+VK VSGKHKVTRTSCG G+
Sbjct: 1409 TGISGSSKLYQFMGAEVQEEESSGVSVEVQKESGVPPLVGGENEVVVNPLRWQADESIVLTVPAVTKRYKLRVRQASCYCSK----------------CSVGAYDDCVPAKKYEGMVGMVKDVSGKHKVTRTSCGVGD 1530
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BLAST of mRNA_Ecto-sp6_S_contig97.18728.1 vs. uniprot
Match: A0A6H5KXK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXK6_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 1.150e-38
Identity = 97/178 (54.49%), Postives = 101/178 (56.74%), Query Frame = 2 
Query:    2 TGISGSSKLSQFMGAEVQQEESSGVGVEVQTESGAPLVGGEKEVVANPQRWQADKSIVLTLPAVTKRYKLRVCQASCYCS----------------------N*LRCWGLR--------------RLRPGQAVC-----GGGGY-------------GVVKAVSGKHKVTRTSCGTGN 373
            TGISGSSKL QFMGAEVQ+EESSGVGVEVQ E G  LVGGEKEVV NPQRWQAD+S VLTLPAVTKRYKLRV QASCYCS                      N  R W                 +LR  QA C       G Y             G+VK VSGKHKVTR SCG GN
Sbjct:  182 TGISGSSKLYQFMGAEVQEEESSGVGVEVQKEDGVSLVGGEKEVVVNPQRWQADESTVLTLPAVTKRYKLRVRQASCYCSKCSVGAYDDCVPLVGGEKEVVANPQR-WQADESTVLTLPAVTKRYKLRVRQASCYCSKCSVGAYDDCVSAKKYAGMVGMVKTVSGKHKVTRASCGVGN 358
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BLAST of mRNA_Ecto-sp6_S_contig97.18728.1 vs. uniprot
Match: A0A6H5JJU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJU0_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 2.420e-38
Identity = 72/81 (88.89%), Postives = 75/81 (92.59%), Query Frame = 2 
Query:    2 TGISGSSKLSQFMGAEVQQEESSGVGVEVQTESGAPLVGGEKEVVANPQRWQADKSIVLTLPAVTKRYKLRVCQASCYCSN 244
            TGISGSSKL QFMGAEVQ+EESSGVGVEVQTE+G PL GGEKEVVANPQRWQAD+S VLTLPAVTKRYKLRV QASCYCS 
Sbjct:  115 TGISGSSKLYQFMGAEVQEEESSGVGVEVQTENGVPLEGGEKEVVANPQRWQADESTVLTLPAVTKRYKLRVRQASCYCSK 195
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BLAST of mRNA_Ecto-sp6_S_contig97.18728.1 vs. uniprot
Match: A0A6H5K491_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K491_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 1.370e-35
Identity = 72/80 (90.00%), Postives = 75/80 (93.75%), Query Frame = 2 
Query:    2 TGISGSSKLSQFMGAEVQQEESSGVGVEVQTESGAPLVGGEKEVVANPQRWQADKSIVLTLPAVTKRYKLRVCQASCYCS 241
            TGISGSSKL QFMGAEVQ+EESSGVGVEVQTE+G PLVGGEKEVVANPQRWQAD+S VLTLP VTKRYKLRV QASCYCS
Sbjct:  519 TGISGSSKLYQFMGAEVQEEESSGVGVEVQTENGVPLVGGEKEVVANPQRWQADESTVLTLPTVTKRYKLRVRQASCYCS 598
[Close]
BLAST of mRNA_Ecto-sp6_S_contig97.18728.1 vs. uniprot
Match: A0A6H5KM72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM72_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 3.060e-29
Identity = 77/124 (62.10%), Postives = 81/124 (65.32%), Query Frame = 2 
Query:    2 TGISGSSKLSQFMGAEVQQEESSGVGVEVQTESGAPLVGGEKEVVANPQRWQADKSIVLTLPAVTKRYKLRVCQASCYCSN*LRCWGLRRLRPGQAVCGGGGYGVVKAVSGKHKVTRTSCGTGN 373
            TGISGSSKL QFMGAEVQ+EESSGVGVEVQ E+G  L               ADKS VLTLPAVTKRYKLRV QASCYCS            P +   G    G+VKAVSGKHKVTR SCG GN
Sbjct:  323 TGISGSSKLYQFMGAEVQEEESSGVGVEVQKENGVLL---------------ADKSTVLTLPAVTKRYKLRVRQASCYCSK-CSVGAYDDCVPAKKYAGM--VGMVKAVSGKHKVTRASCGVGN 428
[Close]
BLAST of mRNA_Ecto-sp6_S_contig97.18728.1 vs. uniprot
Match: A0A6H5KXG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXG9_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 3.450e-26
Identity = 64/81 (79.01%), Postives = 66/81 (81.48%), Query Frame = 2 
Query:    2 TGISGSSKLSQFMGAEVQQEESSGVGVEVQTESGAPLVGGEKEVVANPQRWQADKSIVLTLPAVTKRYKLRVCQASCYCSN 244
            TGISGSSKL QFMGAEVQ+EESSGV VEVQ ESG         VVANPQRWQAD+SIV TLPAVTKRYKLRV QASCYCS 
Sbjct:  527 TGISGSSKLYQFMGAEVQEEESSGVSVEVQKESG---------VVANPQRWQADESIVRTLPAVTKRYKLRVRQASCYCSK 598
[Close]
BLAST of mRNA_Ecto-sp6_S_contig97.18728.1 vs. uniprot
Match: A0A6H5KR28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR28_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 8.800e-19
Identity = 65/121 (53.72%), Postives = 70/121 (57.85%), Query Frame = 2 
Query:    2 TGISGSSKLSQFMGAEVQQEESSGVGVEVQTESGAPLVGGEKEVVANPQRWQADKSIVLTLPAVTKRYKLRVCQASCYCSN*L-----RCWGLRRLRPGQAVCGGGGYGVVKAVSGKHKVT 349
            TGISGSSKL QFMGAEVQQEESSGVGVE                        AD+SIVLTLPAVTKRY+LRV QASC CS         C+  R+          G  G+VKAVSGKHK T
Sbjct:  182 TGISGSSKLYQFMGAEVQQEESSGVGVE------------------------ADESIVLTLPAVTKRYELRVRQASCCCSKCSVGAYDDCFPARKYA--------GVVGMVKAVSGKHKAT 270
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BLAST of mRNA_Ecto-sp6_S_contig97.18728.1 vs. uniprot
Match: A0A6H5K6N6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6N6_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 1.200e-14
Identity = 40/50 (80.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:   97 ERGSPRRWRERGCSQPAEMAGGQINRSDASGCHEAIQATRLPGVVLLLEL 246
            E G P    ERGCS+PAEMAGG+INRSDASGCHEAIQATR PGVVLLLE+
Sbjct:  298 ENGIPLVGGERGCSEPAEMAGGRINRSDASGCHEAIQATRSPGVVLLLEV 347
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig97.18728.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5J993_9PHAE1.740e-4170.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KT99_9PHAE8.620e-3964.49Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWW3_9PHAE9.150e-3964.49MULE domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6H5KXK6_9PHAE1.150e-3854.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJU0_9PHAE2.420e-3888.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K491_9PHAE1.370e-3590.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KM72_9PHAE3.060e-2962.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXG9_9PHAE3.450e-2679.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KR28_9PHAE8.800e-1953.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6N6_9PHAE1.200e-1480.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig97contigEcto-sp6_S_contig97:506160..506576 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size417
Hectar predicted targeting categoryother localisation
Exons1
Cds size417
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350594.5389123-CDS-Ecto-sp6_S_contig97:506159..5065761682350594.5389123-CDS-Ecto-sp6_S_contig97:506159..506576Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig97 506160..506576 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig97.18728.1prot_Ecto-sp6_S_contig97.18728.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig97 506160..506576 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig97.18728.1

>prot_Ecto-sp6_S_contig97.18728.1 ID=prot_Ecto-sp6_S_contig97.18728.1|Name=mRNA_Ecto-sp6_S_contig97.18728.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=139bp
DRHLWEFQAVPVHGSGGPAGGELGRRRRGADRERGSPRRWRERGCSQPAE
MAGGQINRSDASGCHEAIQATRLPGVVLLLELIAVLGLTTTASRPSSMRG
WWVWCGEGCVGQAQGYSDVLWYRELRGVRVARHVLVIDA
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mRNA from alignment at Ecto-sp6_S_contig97:506160..506576+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig97.18728.1 ID=mRNA_Ecto-sp6_S_contig97.18728.1|Name=mRNA_Ecto-sp6_S_contig97.18728.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=417bp|location=Sequence derived from alignment at Ecto-sp6_S_contig97:506160..506576+ (Ectocarpus species6 EcLAC_371)
GACCGGCATCTCTGGGAGTTCCAAGCTGTCCCAGTTCATGGGAGCGGAGG
TCCAGCAGGAGGAGAGCTCGGGCGTAGGCGTAGAGGTGCAGACAGAGAGC
GGGGCTCCCCTCGTAGGTGGCGAGAAAGAGGTTGTAGCCAACCCGCAGAG
ATGGCAGGCGGACAAATCAATCGTTCTGACGCTTCCGGCTGTCACGAAGC
GATACAAGCTACGCGTTTGCCAGGCGTCGTGCTACTGCTCGAATTAATTG
CGGTGTTGGGGCTTACGACGACTGCGTCCCGGCCAAGCAGTATGCGGGGG
TGGTGGGTATGGTGTGGTGAAGGCTGTGTCGGGCAAGCACAAGGTTACTC
GGACGTCTTGTGGTACAGGGAATTGCGGGGTGTCCGTGTTGCACGTCATG
TTCTTGTGATTGACGCC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig97:506160..506576+

>mRNA_Ecto-sp6_S_contig97.18728.1 ID=mRNA_Ecto-sp6_S_contig97.18728.1|Name=mRNA_Ecto-sp6_S_contig97.18728.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=417bp|location=Sequence derived from alignment at Ecto-sp6_S_contig97:506160..506576+ (Ectocarpus species6 EcLAC_371)
GACCGGCATCTCTGGGAGTTCCAAGCTGTCCCAGTTCATGGGAGCGGAGG
TCCAGCAGGAGGAGAGCTCGGGCGTAGGCGTAGAGGTGCAGACAGAGAGC
GGGGCTCCCCTCGTAGGTGGCGAGAAAGAGGTTGTAGCCAACCCGCAGAG
ATGGCAGGCGGACAAATCAATCGTTCTGACGCTTCCGGCTGTCACGAAGC
GATACAAGCTACGCGTTTGCCAGGCGTCGTGCTACTGCTCGAATTAATTG
CGGTGTTGGGGCTTACGACGACTGCGTCCCGGCCAAGCAGTATGCGGGGG
TGGTGGGTATGGTGTGGTGAAGGCTGTGTCGGGCAAGCACAAGGTTACTC
GGACGTCTTGTGGTACAGGGAATTGCGGGGTGTCCGTGTTGCACGTCATG
TTCTTGTGATTGACGCC
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