prot_Ecto-sp6_S_contig93.18498.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp6_S_contig93.18498.1
Unique Nameprot_Ecto-sp6_S_contig93.18498.1
Typepolypeptide
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length209
Homology
BLAST of mRNA_Ecto-sp6_S_contig93.18498.1 vs. uniprot
Match: A0A6H5L6C7_9PHAE (GOLD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6C7_9PHAE)

HSP 1 Score: 357 bits (917), Expect = 6.580e-124
Identity = 184/205 (89.76%), Postives = 193/205 (94.15%), Query Frame = 0
Query:    4 FRYALALVGLSIAYGIEPTPILIDVLPGETRCVGDSVRVGEDTTFTFRATPVDGPFVDKVKVILEHPNGEEPFIAELTELEQFHRVDKGEGGGTYRVCFHNLKTKGTSTRVELVETTLAVTKGASQVAKHLQPADELLKHAKDLAKSLSAQLRESASSEREGIDSDKVLRSRINVVALFTVVVLLSVSGWQLALLNKFFRSKKLI 208
            FRYAL LVGLSIAYGIEPTPILIDVLPGETRCVGDSVRVGEDTTFTFRA PVDGPF DKVKVILEHPNGEEPFIAELTE  + HRVDKGEGGGTYRVCF N+KTKG STRVELVETTLAVT+GASQVAKHLQP DELLKHAK+LAKSLS QLRE+ASSEREG+DSDKVLRSRIN+VA FTV+ LLSVSGWQL+LLNKFFRSKKLI
Sbjct:    3 FRYALVLVGLSIAYGIEPTPILIDVLPGETRCVGDSVRVGEDTTFTFRAAPVDGPFSDKVKVILEHPNGEEPFIAELTEERESHRVDKGEGGGTYRVCFRNMKTKGRSTRVELVETTLAVTQGASQVAKHLQPVDELLKHAKELAKSLSEQLRENASSEREGLDSDKVLRSRINIVAAFTVLGLLSVSGWQLSLLNKFFRSKKLI 207          
BLAST of mRNA_Ecto-sp6_S_contig93.18498.1 vs. uniprot
Match: A0A835Z684_9STRA (Emp24/gp25L/p24 family/GOLD-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z684_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.280e-17
Identity = 64/194 (32.99%), Postives = 102/194 (52.58%), Query Frame = 0
Query:   26 IDVLPGETRCVGDSVRVGEDTT--FTFRATPVDGPFVD----KVKVILEHPNGEEPFIAELTELEQFHRVDKGEGGGTYRVCFHNLKTKGTSTRVELVETTLAVTKGASQVAKH-----LQPADELLKHAKDLAKSLSAQLRESASSEREGIDSDKVLRSRINVVALFTVVVLLSVSGWQLALLNKFFRSKKLI 208
            +DV PG+TRC+G+   +GEDT   F F+  P +   +D     V V++  P+G+  F   L   +        EG G Y +CF +     ++  ++ V+ ++     +    K      LQP + LL  A+D A++++A++  S   E E   +   +  RIN  ALF++VVLL +S WQ+  L KFFRSKKL+
Sbjct:   22 LDVQPGDTRCLGE--ELGEDTPAKFVFKQAPRNNKPLDFNSKGVYVMVTDPSGKSIFKQMLRGEQDVEFQYTSEGPGLYHICFSS-----SAHSIQRVDLSVGRHYDSESFVKSIKEEALQPLELLLSRAEDAARAINAEMDLSIQRESELKYTSVNMEWRINAFALFSIVVLLGLSAWQIVFLKKFFRSKKLL 208          
BLAST of mRNA_Ecto-sp6_S_contig93.18498.1 vs. uniprot
Match: W7TMZ8_9STRA (Transmembrane emp24 domain-containing protein 10 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TMZ8_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 4.400e-10
Identity = 59/209 (28.23%), Postives = 98/209 (46.89%), Query Frame = 0
Query:    1 MQLFRYALALVGLSIAYGIEPTPILIDVLPGETRCVGDSVRVGEDTTFTFRATPVDGPFVDKVKVILEHPNGEEPFIAELTELEQFHRVDKGEGGGTYRVCFHNLKTKGTSTRVELVETTLAVTKGASQVAK-HLQPADELLKHAKDLAKSLSAQLRESASSEREGIDSDKVLRSRINVVALFTVVVLLSVSGWQLALLNKFFRSKKLI 208
            + LF   LAL+ L  A       I +D+ P  TRCV D     ED+T   RA    G   D ++ ++  P+    +   LT   +  ++   +  G Y++CF N   +     V L++  + +    +   K HLQP   L + A+     +S +L      E    ++ +    RI   ++F++V+LL+VS WQ+  L  FFR+KKL+
Sbjct:   42 LLLFSCQLALLSLVNA-------IQLDLQPHTTRCVADEYAPEEDSTIKVRAV---GRVQDGIRGMVSTPDNRLFWDGYLTAKIEDVKIP-ADYFGLYKICFWNGGREVQRVEVGLLDKAVQLHNAETAKTKEHLQPLQLLFRRAELTVAGVSKELDSVRQREASLRETSESTNRRIQWFSIFSIVILLAVSIWQVTFLKSFFRAKKLL 239          
BLAST of mRNA_Ecto-sp6_S_contig93.18498.1 vs. uniprot
Match: A0A7S2V9A1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V9A1_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.320e-5
Identity = 51/203 (25.12%), Postives = 89/203 (43.84%), Query Frame = 0
Query:   25 LIDVLPGETRCVGDSVRVGEDTTFTFRATPV--DGPFVDK---------VKVILEHPNGEEPFIAEL-----TELEQFHRVDKGEGGGTYRVCFHNLKT---KGTSTRVELVETTLAVTKGASQVAKHLQPADELLKHAKDLAKSLSAQLRESASSEREGIDSDKVLRSRINVVALFTVVVLLSVSGWQLALLNKFFRSKKLI 208
            ++D+ PGE RC+G  V     TTF+    P   D   + K         V+  + +P  +  F  EL     T + +  +VD     G + +CF N      +  S  VE+ +T +A      ++  HL P +   K  +   KS++ ++    + E     + +    RI   +  ++ +LL+V   Q+  L +FF SKKL+
Sbjct:    1 MLDLEPGEERCIGQEVGDNAATTFSMHVVPSREDEKGLSKNEAYEKPARVQATVRNPWKKRLFRRELLFSPATTVYEPKKVD----AGLHTICFQNYNDSPRRRISLEVEVADTKVA------RIKDHLAPVERSFKRTETALKSINNEMDYMRAREARMAATSESTARRIQWFSFLSIFILLAVCAVQIFYLKRFFLSKKLL 193          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig93.18498.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L6C7_9PHAE6.580e-12489.76GOLD domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A835Z684_9STRA1.280e-1732.99Emp24/gp25L/p24 family/GOLD-domain-containing prot... [more]
W7TMZ8_9STRA4.400e-1028.23Transmembrane emp24 domain-containing protein 10 n... [more]
A0A7S2V9A1_9STRA1.320e-525.12Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009038GOLD domainSMARTSM01190EMP24_GP25L_2coord: 23..203
e-value: 1.7E-11
score: 54.2
IPR009038GOLD domainPFAMPF01105EMP24_GP25Lcoord: 26..203
e-value: 3.4E-16
score: 59.7
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..177
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 199..208
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 178..198
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..13
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..18
score: 0.619
NoneNo IPR availableTMHMMTMhelixcoord: 176..198

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig93contigEcto-sp6_S_contig93:619661..623866 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig93.18498.1mRNA_Ecto-sp6_S_contig93.18498.1Ectocarpus species6 EcLAC_371mRNAEcto-sp6_S_contig93 618979..624136 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp6_S_contig93.18498.1 ID=prot_Ecto-sp6_S_contig93.18498.1|Name=mRNA_Ecto-sp6_S_contig93.18498.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=209bp
MQLFRYALALVGLSIAYGIEPTPILIDVLPGETRCVGDSVRVGEDTTFTF
RATPVDGPFVDKVKVILEHPNGEEPFIAELTELEQFHRVDKGEGGGTYRV
CFHNLKTKGTSTRVELVETTLAVTKGASQVAKHLQPADELLKHAKDLAKS
LSAQLRESASSEREGIDSDKVLRSRINVVALFTVVVLLSVSGWQLALLNK
FFRSKKLI*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009038GOLD_dom