mRNA_Ecto-sp6_S_contig93.18445.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig93.18445.1
Unique NamemRNA_Ecto-sp6_S_contig93.18445.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig93.18445.1 vs. uniprot
Match: A0A6H5JID7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JID7_9PHAE)

HSP 1 Score: 578 bits (1491), Expect = 1.510e-206
Identity = 315/354 (88.98%), Postives = 318/354 (89.83%), Query Frame = 1
Query:    1 MEGLPERGRHTFWGRKTHPKTTPVVTEGPLPRHHREYATAERAAMDEEVGQAVENDNERVNQRIKRIMMFVVVALVVSAIVDIACHDNVRTWLETSFDWIEDNPKAGVVVFALLFCLSTLLFVPGLLLTIGAGVAFGRALGFGFGVLWGSVAVLLGAVVACVIAFYLGRYVLHEQAQSCAKRYRILSAVNTAIERNGVKVMILLRLSPLVPFSGFNFIAGLTKVSLRDYLLGTVGIVPGTLAFVYIGASTAGTMNEEEAMNSGEVDRTECIIRMVTLIGGAVAAVLAIVAVTIYARRALKQALVESELDANADKAENAGPEGSATDVEFGSSPEEFKEALDSGGDEGQERSWGQ 1062
            MEGLPERGR  FWG K HPKTTPVV EGPLPR HREYATAERAAMDEEVGQAVE DNERV                 SAIVDIACHDNVRTWLETSF+WIEDNPKAGVVVFALLFCLSTLLFVPGLLLTIGAGVAFGRALGFGFGVLWGSVAVLLGAVVACVIAFYLGRYVLHEQAQSCAKRYRILSAVNTAIERNGVKVMILLRLSPLVPFSGFNFIAGLTKVSLRDYLLGTVGIVPGTLAFVYIGASTAGTMNE+EAMNSGE DRTECIIRM TLI GAVAAVLAIVAVTIYARRALKQALVESELDANADK E A  EGSATDVE GSSP EFKEA+DSGG  G ERSWGQ
Sbjct:    1 MEGLPERGRRAFWGPKAHPKTTPVVKEGPLPRQHREYATAERAAMDEEVGQAVEKDNERVXXXXXXXXXXXXXXXXXSAIVDIACHDNVRTWLETSFEWIEDNPKAGVVVFALLFCLSTLLFVPGLLLTIGAGVAFGRALGFGFGVLWGSVAVLLGAVVACVIAFYLGRYVLHEQAQSCAKRYRILSAVNTAIERNGVKVMILLRLSPLVPFSGFNFIAGLTKVSLRDYLLGTVGIVPGTLAFVYIGASTAGTMNEQEAMNSGEADRTECIIRMATLIVGAVAAVLAIVAVTIYARRALKQALVESELDANADKEEKAEHEGSATDVECGSSPGEFKEAVDSGGSGG-ERSWGQ 353          
BLAST of mRNA_Ecto-sp6_S_contig93.18445.1 vs. uniprot
Match: D7G9F3_ECTSI (Hypothetical UPF0043 protein slr0305 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9F3_ECTSI)

HSP 1 Score: 486 bits (1250), Expect = 4.810e-171
Identity = 251/257 (97.67%), Postives = 252/257 (98.05%), Query Frame = 1
Query:    1 MEGLPERGRHTFWGRKTHPKTTPVVTEGPLPRHHREYATAERAAMDEEVGQAVENDNERVNQRIKRIMMFVVVALVVSAIVDIACHDNVRTWLETSFDWIEDNPKAGVVVFALLFCLSTLLFVPGLLLTIGAGVAFGRALGFGFGVLWGSVAVLLGAVVACVIAFYLGRYVLHEQAQSCAKRYRILSAVNTAIERNGVKVMILLRLSPLVPFSGFNFIAGLTKVSLRDYLLGTVGIVPGTLAFVYIGASTAGTMNEE 771
            MEGLPERGR  FWG KTHP+TTPVVTEGPLPR HREYATAERAAMDEEVGQAVE DNERVNQRIKRIMMFVVVALVVSAIVDIACHDNVRTWLETSFDWIEDNPKAGVVVFALLFCLSTLLFVPGLLLTIGAGVAFGRALGFGFGVLWGSVAVLLGAVVACVIAFYLGRYVLHEQAQSCAKRYRILSAVNTAIERNGVKVMILLRLSPLVPFSGFNFIAGLTKVSLRDYLLGTVGIVPGTLAFVYIGASTAGTMNEE
Sbjct:    1 MEGLPERGRRAFWGGKTHPRTTPVVTEGPLPRQHREYATAERAAMDEEVGQAVEKDNERVNQRIKRIMMFVVVALVVSAIVDIACHDNVRTWLETSFDWIEDNPKAGVVVFALLFCLSTLLFVPGLLLTIGAGVAFGRALGFGFGVLWGSVAVLLGAVVACVIAFYLGRYVLHEQAQSCAKRYRILSAVNTAIERNGVKVMILLRLSPLVPFSGFNFIAGLTKVSLRDYLLGTVGIVPGTLAFVYIGASTAGTMNEE 257          
BLAST of mRNA_Ecto-sp6_S_contig93.18445.1 vs. uniprot
Match: D7FIK1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIK1_ECTSI)

HSP 1 Score: 203 bits (517), Expect = 2.280e-59
Identity = 104/219 (47.49%), Postives = 153/219 (69.86%), Query Frame = 1
Query:  283 TSF-DWIEDNPKAGVVVFALLFCLSTLLFVPGLLLTIGAGVAFGRALGFGFGVLWGSVAVLLGAVVACVIAFYLGRYVLHEQAQSCAKRYRILSAVNTAIERNGVKVMILLRLSPLVPFSGFNFIAGLTKVSLRDYLLGTVGIVPGTLAFVYIGASTAGTMNEEEAMNSGEVDRTECIIRMVTLIGGAVAAVLAIVAVTIYARRALKQALVESELDANA 936
            TSF +W+EDNP  G + FAL++  +T+ F+PG LLT+GAG+ FGRALG G G+L GS+AVL GA V  ++AF LGR+VL EQAQ    ++++L AVN AI+  G+K++ILLRLSP+VPFS FN++ G+T V  RDY +G VG +PGT+AFV+IG + +G + ++              ++++  I G +A V+A+V ++IYA+RAL + L E  ++  A
Sbjct:   75 TSFLEWVEDNPGLGALAFALVYVFTTVCFIPGSLLTLGAGLVFGRALGTGLGILVGSLAVLAGATVGSILAFLLGRFVLQEQAQGLFNKFKVLKAVNRAIKSQGLKLVILLRLSPVVPFSAFNYVMGVTDVFFRDYAIGCVGFIPGTVAFVFIGTTASGLLGDDSEEXXXXXXXXXGTVQLIVGIVGGIATVIAVVLISIYAKRALNKVLEEDRVEQEA 293          
BLAST of mRNA_Ecto-sp6_S_contig93.18445.1 vs. uniprot
Match: A0A7S2Y1P9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1P9_9STRA)

HSP 1 Score: 201 bits (511), Expect = 1.110e-58
Identity = 116/265 (43.77%), Postives = 175/265 (66.04%), Query Frame = 1
Query:  184 QRIKRIMM-FVVVALVVSAIVDIACHD--NVRTWLETSFDWIEDNPKAGVVVFALLFCLSTLLFVPGLLLTIGAGVAFGRALGFGFGVLWGSVAVLLGAVVACVIAFYLGRYVLHEQAQSCAKRYRILSAVNTAIERNGVKVMILLRLSPLVPFSGFNFIAGLTKVSLRDYLLGTVGIVPGTLAFVYIGASTAGT-----MNEEEAMNSGEVDRTEC-----IIRMVTLIGGAVAAVLAIVAVTIYARRALKQALVESELDANAD 939
            ++I+++ +  V+V L++  IVD +     NV   L     W+EDNP  GV  FA ++   T+ F+PG LLT+GAG+ FGRALG G GV  GS AV+LGA +  +IAF LGRYVL + AQ    +++I+ AV+ AIE  G+K+ +LLRLSP+VPF+ FN+I GLT +SL+DY +G +GI+PGT+A+V+IG+S +G       +EE+  N+ + D  E       + ++ +I GA+A V+A+  ++ YA++AL + L E EL+ N D
Sbjct:   22 EKIRKLCLGLVLVGLIIYVIVDYSVPSLGNVNIVLSDFLAWVEDNPIEGVFAFACVYMFCTVAFIPGSLLTLGAGLVFGRALGIGRGVALGSFAVILGASIGAIIAFILGRYVLQDTAQVLFNKFKIMRAVDKAIESQGLKLCLLLRLSPVVPFNAFNYIMGLTAISLKDYTIGCLGIIPGTVAYVFIGSSASGIGDMKGNDEEQNDNTKDADGEESSSDNDTVFLIVIIVGAIATVIAVFLISWYAKKALNRILNEVELEENQD 286          
BLAST of mRNA_Ecto-sp6_S_contig93.18445.1 vs. uniprot
Match: A0A7S2MII1_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MII1_9STRA)

HSP 1 Score: 179 bits (455), Expect = 1.920e-50
Identity = 97/256 (37.89%), Postives = 159/256 (62.11%), Query Frame = 1
Query:  190 IKRIMMFVVVALVVSAIVDIACHDNVRTWLETSFDWIEDNPKAGVVVFALLFCLSTLLFVPGLLLTIGAGVAFGRALGFGFGVLWGSVAVLLGAVVACVIAFYLGRYVLHEQAQSCAKRYRILSAVNTAIERNGVKVMILLRLSPLVPFSGFNFIAGLTKVSLRDYLLGTVGIVPGTLAFVYIGASTAGTMNEEEAMNSGEVDRTECIIRMVTLIGGAVAAVLAIVAVTIYARRALKQALVESELDANADKAENAG 957
            IK  +  ++V  ++  IVD A   ++RT +E+  +WIEDNP  GV  F  ++ ++T+LF PGL+LT+GAG  F  ALG G GV+  + AV +GA    + AF +GRY+L +      K+Y I  AV+ A++  G+++MILLRLSPL+PF+  N+I G+T VS RD+ +  +GI+PGTL +V++G+S AG++ +  +            +R++T++ G+V  +L +   + YAR+ L+  +   E +A   + E+ G
Sbjct:   31 IKIALGLLLVGFIIYVIVDFATSKHLRTAMESFLNWIEDNPTEGVFAFMGVYFVATILFAPGLILTLGAGFVFANALGLGLGVVLATTAVFVGASTGSMAAFLIGRYLLRDWVVGLTKKYAIFEAVDVALKEKGLRIMILLRLSPLIPFNALNYIVGVTSVSFRDFTIAMIGILPGTLLYVFLGSS-AGSLTDSSSGGDNSA------VRILTIVLGSVFGILGVCVTSYYARKELQNVISRREAEAAQLEVEDIG 279          
BLAST of mRNA_Ecto-sp6_S_contig93.18445.1 vs. uniprot
Match: A0A7S2A6Q3_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A6Q3_TRICV)

HSP 1 Score: 174 bits (442), Expect = 2.760e-48
Identity = 94/245 (38.37%), Postives = 153/245 (62.45%), Query Frame = 1
Query:  193 KRIMMFVVVALVVSAIVDIACHDNVRTWLETSFDWIEDNPKAGVVVFALLFCLSTLLFVPGLLLTIGAGVAFGRALGFGFGVLWGSVAVLLGAVVACVIAFYLGRYVLHEQAQSCAKRYRILSAVNTAIERNGVKVMILLRLSPLVPFSGFNFIAGLTKVSLRDYLLGTVGIVPGTLAFVYIGASTAGTMNEEEAMNSGEVDRTECIIRMVTLIGGAVAAVLAIVAVTIYARRALKQALVESELD 927
            K I+  V+V L+V  IVD   H  V+  +E    WIE+NP  G+ VF  ++ ++T+LFVPG LLT+G+G  F  + G GFGVL  ++AV +GA +  ++AF LGRY+L +  ++  K+Y +  A++ A+E  G+++MILLRLSP++PF+  N+I G+T VS + Y      I+PGT+ FV++GAS    +   ++ N G+      ++ + T++ G V  V+AI   + YA++ L + L + + D
Sbjct:   46 KIIVGLVLVGLIVFIIVDSVTHGFVKGAIEGLLQWIEENPIRGLFVFMAVYFVATVLFVPGSLLTLGSGFVFAESFGLGFGVLLATLAVFVGATLGALVAFILGRYLLRDWVENLTKKYNVFRAIDKALEEKGLRIMILLRLSPIIPFNALNYICGVTSVSFKHYAWANFAILPGTILFVFLGASAGSLV---DSGNGGDTP----VVTIATIVVGVVFGVIAIALTSRYAKKELNKILEQEKTD 283          
BLAST of mRNA_Ecto-sp6_S_contig93.18445.1 vs. uniprot
Match: A0A7S4W131_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4W131_9STRA)

HSP 1 Score: 174 bits (441), Expect = 3.680e-48
Identity = 90/233 (38.63%), Postives = 145/233 (62.23%), Query Frame = 1
Query:  211 VVVALVVSAIVDIACHDNVRTWLETSFDWIEDNPKAGVVVFALLFCLSTLLFVPGLLLTIGAGVAFGRALGFGFGVLWGSVAVLLGAVVACVIAFYLGRYVLHEQAQSCAKRYRILSAVNTAIERNGVKVMILLRLSPLVPFSGFNFIAGLTKVSLRDYLLGTVGIVPGTLAFVYIGASTAGTMNEEEAMNSGEVDRTECIIRMVTLIGGAVAAVLAIVAVTIYARRALKQAL 909
            ++V  ++  I+D+A   N    +    DWIEDNP AGV  F  ++ ++++ F+PGL+LT+GAG  F  ALG G G+   +VAV  GA      +F +GRY+L +      K+  I  A++ A++  G+++MILLR+SPLVPF+ FN++AG+T +SLRDY +G +GI+PGTL ++ +G+S    ++   + N   V       R+++++ G V AVL + A T YA++ L + L
Sbjct:   35 ILVGFIIYVIIDLATTKNTMRIVADFLDWIEDNPAAGVFAFIGVYIIASIFFIPGLILTLGAGFVFANALGLGVGIFLATVAVFFGAFFGACASFLIGRYLLRDCVGKLTKKRVIFEAIDAALKDKGLRIMILLRVSPLVPFNVFNYVAGVTSISLRDYAIGMIGILPGTLLYILLGSSAGSLVDSSSSGNDSTV-------RIISIVLGIVFAVLGVYATTYYAKKELNKIL 260          
BLAST of mRNA_Ecto-sp6_S_contig93.18445.1 vs. uniprot
Match: D7G9F2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9F2_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 1.150e-47
Identity = 92/95 (96.84%), Postives = 93/95 (97.89%), Query Frame = 1
Query:  778 MNSGEVDRTECIIRMVTLIGGAVAAVLAIVAVTIYARRALKQALVESELDANADKAENAGPEGSATDVEFGSSPEEFKEALDSGGDEGQERSWGQ 1062
            MNSGE DRTECIIRMVTLIGGAVAAVLAIVAVTIYARRALKQALVESELDANADKAENAG EGSATDVEFGSSPEEFKEALDSGGDEG+ERSWGQ
Sbjct:    1 MNSGEADRTECIIRMVTLIGGAVAAVLAIVAVTIYARRALKQALVESELDANADKAENAGHEGSATDVEFGSSPEEFKEALDSGGDEGEERSWGQ 95          
BLAST of mRNA_Ecto-sp6_S_contig93.18445.1 vs. uniprot
Match: A0A7S2JYW7_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JYW7_9STRA)

HSP 1 Score: 168 bits (425), Expect = 2.720e-46
Identity = 96/238 (40.34%), Postives = 153/238 (64.29%), Query Frame = 1
Query:  211 VVVALVVSAIVDIACHDN-VRTWLETSFDWIEDNPKAGVVVFALLFCLSTLLFVPGLLLTIGAGVAFGRALGFGFGVLWGSVAVLLGAVVACVIAFYLGRYVLHEQAQSCAKRYRILSAVNTAIERNGVKVMILLRLSPLVPFSGFNFIAGLTKVSLRDYLLGTVGIVPGTLAFVYIGASTAGTMNEEEAMNSGEVDRTECIIRMVTLIGGAVAAVLAIVAVTIYARRALKQALVESE 921
            +++A +   IVD A  D  V + +E   DW+EDNP  GV  F  ++ ++T+LF+PG +LT+GAG  F  A G G GVL  S+AV +GA    + +F LGRY+L +   +   +Y++  A++TA+  NG K+M LLRLSP++PF+  N+IAG+T VS RD  L  + I+PGT+ +V++G+S AG++++ E+  SG+ D+T  II   T++ G V  +L I A + YA++ L   + + +
Sbjct:   27 ILLAFIAYVIVDSASGDGRVTSTVEDFLDWVEDNPAEGVFAFIGVYFVATVLFIPGTILTLGAGFVFSSAFGLGVGVLLASIAVFVGASSGALASFLLGRYLLRDWVMTLTSKYQLFGAIDTALTNNGFKIMSLLRLSPIIPFNALNYIAGVTSVSFRDNALALLFILPGTVMYVFLGSS-AGSLSDSES--SGD-DQTTTII---TVVFGIVFGLLGIAATSYYAKKELNAVIAQQD 257          
BLAST of mRNA_Ecto-sp6_S_contig93.18445.1 vs. uniprot
Match: A0A7S3YEX9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YEX9_HETAK)

HSP 1 Score: 168 bits (426), Expect = 3.990e-46
Identity = 99/265 (37.36%), Postives = 159/265 (60.00%), Query Frame = 1
Query:  160 ENDNERVNQRIKRIMMFVVVALVVSAIVDIACHD--NVRTWLETSFDWIEDNPKAGVVVFALLFCLSTLLFVPGLLLTIGAGVAFGRALGFGFGVLWGSVAVLLGAVVACVIAFYLGRYVLHEQAQSCAKRYRILSAVNTAIERNGVKVMILLRLSPLVPFSGFNFIAGLTKVSLRDYLLGTVGIVPGTLAFVYIGASTAGTMNE-EEAMNSGEVDRTEC----------IIRMVTLIGGAVAAVLAIVAVTIYARRALKQALVE 915
            E   +R N+ IK  ++ ++V +++  ++D       +V   L +   W+E++P  GVV FA ++ L+T+LF+PG +LT+GAG+ FGRAL                      IAF LGRYVL + AQ    ++ +L AV+ AIE  G++++ILLRLSP++PFS FN++ GLT+V  R Y+LG VG++PGT+A+V+IG S AG + + ++     E                ++ +V L+ GA A VLA+V +T+ +RRAL++ L++
Sbjct:   39 EKTGDRKNKLIKFGLLSLLVGIIIYVVLDYTLPSLGHVNRILTSFLLWVEEHPGEGVVAFASVYVLTTVLFIPGSILTLGAGLVFGRALXXXXXXXXXXXXXXXXXXXXXXIAFLLGRYVLQDSAQKLFNKFSVLKAVDKAIENEGLRLVILLRLSPVIPFSAFNYVMGLTRVMFRQYVLGCVGMLPGTVAYVFIGTSAAGLLGDADDGSQESEXXXXXXXXXXXXXXXRLVNIVVLVVGAAATVLAVVLITVASRRALRRVLMK 303          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig93.18445.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JID7_9PHAE1.510e-20688.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G9F3_ECTSI4.810e-17197.67Hypothetical UPF0043 protein slr0305 n=1 Tax=Ectoc... [more]
D7FIK1_ECTSI2.280e-5947.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2Y1P9_9STRA1.110e-5843.77Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2MII1_9STRA1.920e-5037.89Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S2A6Q3_TRICV2.760e-4838.37Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S4W131_9STRA3.680e-4838.63Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
D7G9F2_ECTSI1.150e-4796.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2JYW7_9STRA2.720e-4640.34Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S3YEX9_HETAK3.990e-4637.36Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig93contigEcto-sp6_S_contig93:21882..25787 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score484.6
Seed ortholog evalue4e-134
Seed eggNOG ortholog2880.D7G9F3
Model size1062
KEGG rclassRC00046
KEGG koko:K00486
KEGG ReactionR01960
KEGG Pathwayko00380,ko01100,map00380,map01100
KEGG ModuleM00038
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.canonical Wnt signaling pathway involved in osteoblast differentiation
EggNOG OGsCOG0398@1,KOG3140@2759
EC1.14.13.9
Cds size1062
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350565.4122045-CDS-Ecto-sp6_S_contig93:21881..220311682350565.4122045-CDS-Ecto-sp6_S_contig93:21881..22031Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig93 21882..22031 -
1682350565.4245272-CDS-Ecto-sp6_S_contig93:22819..229601682350565.4245272-CDS-Ecto-sp6_S_contig93:22819..22960Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig93 22820..22960 -
1682350565.433452-CDS-Ecto-sp6_S_contig93:23748..240131682350565.433452-CDS-Ecto-sp6_S_contig93:23748..24013Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig93 23749..24013 -
1682350565.4429154-CDS-Ecto-sp6_S_contig93:24419..246061682350565.4429154-CDS-Ecto-sp6_S_contig93:24419..24606Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig93 24420..24606 -
1682350565.4529226-CDS-Ecto-sp6_S_contig93:25468..257871682350565.4529226-CDS-Ecto-sp6_S_contig93:25468..25787Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig93 25469..25787 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig93.18445.1prot_Ecto-sp6_S_contig93.18445.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig93 21882..25787 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig93.18445.1

>prot_Ecto-sp6_S_contig93.18445.1 ID=prot_Ecto-sp6_S_contig93.18445.1|Name=mRNA_Ecto-sp6_S_contig93.18445.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=354bp
MEGLPERGRHTFWGRKTHPKTTPVVTEGPLPRHHREYATAERAAMDEEVG
QAVENDNERVNQRIKRIMMFVVVALVVSAIVDIACHDNVRTWLETSFDWI
EDNPKAGVVVFALLFCLSTLLFVPGLLLTIGAGVAFGRALGFGFGVLWGS
VAVLLGAVVACVIAFYLGRYVLHEQAQSCAKRYRILSAVNTAIERNGVKV
MILLRLSPLVPFSGFNFIAGLTKVSLRDYLLGTVGIVPGTLAFVYIGAST
AGTMNEEEAMNSGEVDRTECIIRMVTLIGGAVAAVLAIVAVTIYARRALK
QALVESELDANADKAENAGPEGSATDVEFGSSPEEFKEALDSGGDEGQER
SWGQ
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mRNA from alignment at Ecto-sp6_S_contig93:21882..25787-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig93.18445.1 ID=mRNA_Ecto-sp6_S_contig93.18445.1|Name=mRNA_Ecto-sp6_S_contig93.18445.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3906bp|location=Sequence derived from alignment at Ecto-sp6_S_contig93:21882..25787- (Ectocarpus species6 EcLAC_371)
ATGGAAGGGCTTCCAGAGCGAGGCCGCCATACGTTCTGGGGGCGGAAAAC ACACCCGAAAACCACACCGGTGGTGACGGAAGGGCCGTTGCCGCGCCACC ACCGCGAGTATGCCACCGCTGAGAGGGCGGCGATGGACGAGGAAGTCGGC CAAGCGGTTGAGAACGACAATGAGCGAGTCAACCAACGCATCAAGAGGAT AATGATGTTCGTGGTGGTTGCGCTGGTAGTCAGCGCGATTGTAGATATTG CCTGCCACGACAACGTCAGGACATGGCTTGAAACGTCGTTCGATTGGATA GAGGACAACCCCAAGGCCGGTGAGTGCGCTCTCTGGCACTGGGTATCACA GCAGTCCTCCCGCACATCCCACAGACTGGCGAGCATCATCTCTTCGAATT TAAACAGCAGCGTGAAAAGCGGCGAGTTTCGTAATCCACATGTACACGTG TTACATAGCAACTAGCAGCGTTCGGCTAAGCGGGCACGAGGCTAGCGTTA CGAACGTTCAGAAGGCGCAGCAGAGGAGAGGATAGCACGCTGCATGCCCA ACATTTGTCGTTCGCCTCGTGTGCAGATATTTGCGTCATCAAGGCCCTTG ACTCAAAGGGGGCAAGCCTTTTTTTGTATCATGAGAGTCGCAAAGAGGCG AAAACATACGCATTCTACAAGCAGTATGCTCCTACGTACAGCAGTAGAGT AGTGATACAATTCATGACTGATTAGTATAGAAGTCTTTTCAGTGAGTGGA GGGAAACTCGTCGGAAACTGGGCTTATTTCTCATATTGAGCTTGTTTAAG CCTGTGCACTGAATTGCAATTCGTATCTGTGAATCAGTCATGCCAGCTGC TGCTATGAATGCAAGATATAGCGGCCCGCTGCGTGGGGGTTTCGATAGAA ACACAGGTTGGTCCTGTAATGCTATGGATTACTTATCCGCTGCTGGTGGG GTATTATCTATGTTTTTCCCATGTGCCCCATGCAGCCGAACAGTCCGACC CTGCTGTCTCTTTCTCCGGAAAAATGCTCAGGAGCTTGCTCGTGTGGAAG CTCAACCGTATTTCGAGTGTATAATCACTACGAGTGTACAGTCACTACCT CGGTTTTAGGTCGCCAGGAAACTTTTGAGCGTAACGCTAAGCAAATCGCT CCTCTCTTGGGCGTCGCTGCTGCTCTCGCAGGGGTCGTGGTTTTCGCCCT GCTCTTCTGCTTGTCGACCCTGCTTTTCGTGCCCGGGCTGCTGCTGACGA TCGGAGCGGGGGTGGCCTTTGGAAGGGCTCTCGGATTTGGTTTCGGGGTC CTGTGGGGCTCCGTGGCTGTGTTGTTGGGAGCGGTGGTGGCGTGTGTCAT CGCCTTTTACCTCGGTCGGTGAGTACTACTTCGAAGTAGTGTCAAAGGAG TTTCGGTTTCTCCGATCGCAGTGCGTACGACCCTGCCTCAAACGGAGCGA TTCACCAACATCGCCTCACGAGAGGATAGCCGGGAGTTGCACCCTCTCGT CTCTTTTCGCCGATTTTGCGAGCCGATCCAAGATTTTCCGAAAGCGTACG TACAATCGCTGCAAAAACTTTTCACCCGTTCGAGATGAACAACACCACAG ACGAATGGACGTGTTGGAAATAGTCGCATTTTCGGCCGGATGCGTTTGCT TGCAACAGCAGCAGCCCGCGTGTATCTCCGACCCACCTGCACCGTCCATC CGGACGTACTGCTGACCTTCCTGCCCACGTGCTTGGCCGTCTCAATGTAT TTATCTCTACTAATCTTGTTTCAGATATGTGCTGCACGAGCAGGCGCAGA GCTGCGCCAAGCGCTACCGGATCTTGAGCGCGGTGAACACCGCGATCGAG CGGAACGGGGTTAAGGTCATGATCCTGCTGCGGCTCTCGCCCCTGGTGCC CTTCTCCGGCTTCAACTTCATCGCGGGCCTGACGAAGGTCTCGCTGCGGG ACTACCTGCTGGGCACGGTGGGCATCGTCCCGGGGACCCTGGCATTTGTG TACATCGGAGCGAGCACGGCGGGCACGATGAACGAGGAGGTACTGCTGTA TGTTGTGCGTGCTCGACAGCCGATTGCACGGTGTGTGTGCATGTATGTTG ACCGACAAACGATTGCATGGACTGCTCGGCGCGTTGCTGCGGCCCACTGC TGATGCGGTGGTACGGGGTAGGGCCATCGGAGCGGGGGGGACCGTTTGCA GCTGACCCCGTCCGCTGTATGTAGCAGCTGCACGCGGCTGAGTTGTACTT ACGGATTGGAAGACGAGAACAGTTACAGTTTACCTCTGCGTGGATGCACA GCTACCTCTGCGTCGACACACAGCAGCTGCTGAGGATGAATGATTTTACT TTAAACCGTGTTCTTGGCGGCGCTCGGCACTGGGTTCATGCGTATCCTCT GTGCGAAATTCGGAAGAAGAGCAGCTCGGTCGAGCAGCACGGTGAACCCG GGTGCGCTAGGCTCAAGCCCGTCCCTCTAGCCCCCGCCGTTCGTCAATTG CAGTGTAGGCGTGTAGTTGTGGCTTTTTTGTCTTATGTGCGTGGCTTGAG CTGTCGGTAGCGCTGGCCGTGCTGACACGCGTGCTGCGCAGTAGGCTCCT TGCCTCACGTCCGATTTGTTGTACTCAAGGCATGGTTTTCACTGCAGTGC AGCCTGTGCCCTAAGGCGCCTGTTCCCACTTTTGTATCCTGAAGAGCGTG AAAGTTCCGTCTTGAACGCTGCCTTCAGCGTCATTATTGGATGCTTAGAC GTCCGAGAGCTGAACGTTTCCACCACCACTTCAACCTGTAACAACAACCC TTACACGCACGTTCTCGGATACCGCAGGAGGCGATGAACTCTGGGGAGGT GGACAGAACGGAGTGCATAATCAGGATGGTGACTCTGATCGGCGGCGCCG TTGCCGCCGTCCTGGCGATCGTGGCGGTTACGATCTACGCCAGGAGAGCT CTCAAGCAAGCGCTAGTGGTGCGTCGGTAGCTGCTGTTGTGGGTTGTTGT TAGTGTAGATGTTAGTGTTGTTGTCGCTCGTGTTGTCGTTCATGTTGTCC AATAAGTGCCGTCCCAACGTACCACAATTTTGTGCTCTGGGAACATCGGT TTCACCGTCGGCATCTTCCGCACCGTGTTTGTAGCTCGCGGATCCGCCAC CTCATTGTTTCATTATCTGTAGGGCAATGGTGTTTTTTTTTGTGGTGTCG AGTTGGGGATCCACTGCGTCTTGTGCAGATGGATGCTGCCGTGGTTGGTT CTGCAAAGCTTACTTGCTGGCGTTACCGGGGCTGGTGTTGTCCTCTTCGC TTCGAGCCTGATGCCGCTCTTTTGGCCTGCCTCGCTCGTTGCATCTCGGA TCTGTAGCTGATCAGACACGTCCATAGTGTTTCCACTTACGAAACAAGTT TCAAGATACGGGCTTTTCGCTCGAGACACGTTTCCAGCCAGTTCCCCGAC CATTCAACAGTCTCTTACGCTTTGTTTCTTGCTGTTTGTTGCTGTCTTGG GATGTATGTCGTCAAACAACACGATATCTCAGCCGCGCTCTTTATTTTTT TCAGCGGCCGGCGACAAGCAGTCCCCGCTTTGATCAATTGTTCGTGCAAC ACGCAAGCGCATCTTGGCCTTTTTCAACTCGTGAAGTGTTTCGCCTGGGT CGTTTCATGCCTTTTCGTGCTCATCTTGGCCCGTTTTCTTTTTCTCATAA ATTGATTCGCCTGTGGGTGGTGTTTTAAATCGCGAATGTTACTTTTCACT TCACAGGAGTCAGAGTTGGACGCCAACGCAGACAAGGCGGAAAACGCGGG GCCCGAGGGAAGCGCCACAGATGTCGAGTTTGGCAGCTCCCCGGAAGAGT TCAAGGAGGCTTTGGACAGCGGCGGGGACGAGGGGCAGGAGAGATCCTGG GGCCAA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig93:21882..25787-

>mRNA_Ecto-sp6_S_contig93.18445.1 ID=mRNA_Ecto-sp6_S_contig93.18445.1|Name=mRNA_Ecto-sp6_S_contig93.18445.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1062bp|location=Sequence derived from alignment at Ecto-sp6_S_contig93:21882..25787- (Ectocarpus species6 EcLAC_371)
ATGGAAGGGCTTCCAGAGCGAGGCCGCCATACGTTCTGGGGGCGGAAAAC
ACACCCGAAAACCACACCGGTGGTGACGGAAGGGCCGTTGCCGCGCCACC
ACCGCGAGTATGCCACCGCTGAGAGGGCGGCGATGGACGAGGAAGTCGGC
CAAGCGGTTGAGAACGACAATGAGCGAGTCAACCAACGCATCAAGAGGAT
AATGATGTTCGTGGTGGTTGCGCTGGTAGTCAGCGCGATTGTAGATATTG
CCTGCCACGACAACGTCAGGACATGGCTTGAAACGTCGTTCGATTGGATA
GAGGACAACCCCAAGGCCGGGGTCGTGGTTTTCGCCCTGCTCTTCTGCTT
GTCGACCCTGCTTTTCGTGCCCGGGCTGCTGCTGACGATCGGAGCGGGGG
TGGCCTTTGGAAGGGCTCTCGGATTTGGTTTCGGGGTCCTGTGGGGCTCC
GTGGCTGTGTTGTTGGGAGCGGTGGTGGCGTGTGTCATCGCCTTTTACCT
CGGTCGATATGTGCTGCACGAGCAGGCGCAGAGCTGCGCCAAGCGCTACC
GGATCTTGAGCGCGGTGAACACCGCGATCGAGCGGAACGGGGTTAAGGTC
ATGATCCTGCTGCGGCTCTCGCCCCTGGTGCCCTTCTCCGGCTTCAACTT
CATCGCGGGCCTGACGAAGGTCTCGCTGCGGGACTACCTGCTGGGCACGG
TGGGCATCGTCCCGGGGACCCTGGCATTTGTGTACATCGGAGCGAGCACG
GCGGGCACGATGAACGAGGAGGAGGCGATGAACTCTGGGGAGGTGGACAG
AACGGAGTGCATAATCAGGATGGTGACTCTGATCGGCGGCGCCGTTGCCG
CCGTCCTGGCGATCGTGGCGGTTACGATCTACGCCAGGAGAGCTCTCAAG
CAAGCGCTAGTGGAGTCAGAGTTGGACGCCAACGCAGACAAGGCGGAAAA
CGCGGGGCCCGAGGGAAGCGCCACAGATGTCGAGTTTGGCAGCTCCCCGG
AAGAGTTCAAGGAGGCTTTGGACAGCGGCGGGGACGAGGGGCAGGAGAGA
TCCTGGGGCCAA
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