mRNA_Ecto-sp6_S_contig92.18430.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig92.18430.1
Unique NamemRNA_Ecto-sp6_S_contig92.18430.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig92.18430.1 vs. uniprot
Match: A0A6H5JQ54_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ54_9PHAE)

HSP 1 Score: 409 bits (1052), Expect = 3.070e-132
Identity = 451/475 (94.95%), Postives = 454/475 (95.58%), Query Frame = 1 
Query:   67 GLRAAAASGWLPFADLITFQLASLAMCVICRHAQKPVLVNVAKRTPKTLWSIDRPRIAHESTDSADEGDGSRGALGFASRVPRPTIEAISWIRASPCPALRDKLPSEAKRLTFGSNFNHTVVGIRWPEGLEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLPVQDSTDKVEEGGVRWPSALERITLGSYRRSLTGVSWPPGLLALVLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSHLSIDSKVFNHPVSGVSWPDFMTDLHFGDGFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLDLGHCHMTWGCGPKEGYENWSPRLEIISRKRISTLGWQRKEECR 1491
            GLRAAAASGWLPFADLIT QLASLAMCVICRHAQKPVLVNVAKRTPKTLWSIDRPRIAHESTDSADEGDGS GA GFASRVPRPTIEAISWIRASPC ALRDKLPSEAKRLTFGSNFNHT+VGIRWPEGLEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   V  STDKV+EGGVRWPS LERI LGSYRRSLTGVSWPPG       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX S  SIDSKVFN+PVSGVSWPDFMTDLHFGDGFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLDLGHCHMTWGCGPKEGYENWSPRLEIISRKRISTLGWQRKEECR
Sbjct:   16 GLRAAAASGWLPFADLITLQLASLAMCVICRHAQKPVLVNVAKRTPKTLWSIDRPRIAHESTDSADEGDGSGGAPGFASRVPRPTIEAISWIRASPCSALRDKLPSEAKRLTFGSNFNHTLVGIRWPEGLEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVH-STDKVKEGGVRWPSTLERIALGSYRRSLTGVSWPPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSQFSIDSKVFNYPVSGVSWPDFMTDLHFGDGFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLDLGHCHMTWGCGPKEGYENWSPRLEIISRKRISTLGWQRKEECR 489
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BLAST of mRNA_Ecto-sp6_S_contig92.18430.1 vs. uniprot
Match: D7FU94_ECTSI (Proline dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU94_ECTSI)

HSP 1 Score: 372 bits (956), Expect = 1.350e-111
Identity = 250/257 (97.28%), Postives = 252/257 (98.05%), Query Frame = 1 
Query:    1 AESRPSAATTDDADRRRYRRDAGLRAAAASGWLPFADLITFQLASLAMCVICRHAQKPVLVNVAKRTPKTLWSIDRPRIAHESTDSADEGDGSRGALGFASRVPRPTIEAISWIRASPCPALRDKLPSEAKRLTFGSNFNHTVVGIRWPEGLEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLPVQDSTDKVEEGGVRWPSALERITLGSYRRSLTGVSWPPGLLALVLT 771
            AESRPSAATTDDADRRR RRDAGLRAAAASGWLPFADLITFQLASLAMCVICRHAQKPVLVNVAKRTPKTLWSIDRPRIAHESTDSADEG+GS GA GFASRVPRPTIEAISWIRASPCPALRDKLPSEAKRL FGSNFNHTVVGIRWPEGLEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLPVQDSTDKV+EGGVRWPS LERITLGSYRRSLTGVSWPPGLLALVLT
Sbjct:    3 AESRPSAATTDDADRRRCRRDAGLRAAAASGWLPFADLITFQLASLAMCVICRHAQKPVLVNVAKRTPKTLWSIDRPRIAHESTDSADEGEGSGGAPGFASRVPRPTIEAISWIRASPCPALRDKLPSEAKRLAFGSNFNHTVVGIRWPEGLEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLPVQDSTDKVKEGGVRWPSTLERITLGSYRRSLTGVSWPPGLLALVLT 259
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig92.18430.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JQ54_9PHAE3.070e-13294.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FU94_ECTSI1.350e-11197.28Proline dehydrogenase n=1 Tax=Ectocarpus siliculos... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig92contigEcto-sp6_S_contig92:500539..502759 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score291.6
Seed ortholog evalue6.4e-76
Seed eggNOG ortholog2880.D7FU94
Model size2221
KEGG rclassRC00083
KEGG koko:K00318
KEGG ReactionR10507
KEGG Pathwayko00330,ko01100,ko01110,ko01130,map00330,map01100,map01110,map01130
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.proline dehydrogenase activity
EggNOG OGsCOG0506@1,KOG0186@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-18_001350.1
Cds size1353
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350563.6282802-UTR-Ecto-sp6_S_contig92:500538..5006791682350563.6282802-UTR-Ecto-sp6_S_contig92:500538..500679Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig92 500539..500679 +
1682350563.6554806-UTR-Ecto-sp6_S_contig92:502032..5027591682350563.6554806-UTR-Ecto-sp6_S_contig92:502032..502759Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig92 502033..502759 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350563.6440964-CDS-Ecto-sp6_S_contig92:500679..5020321682350563.6440964-CDS-Ecto-sp6_S_contig92:500679..502032Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 500680..502032 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig92.18430.1prot_Ecto-sp6_S_contig92.18430.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig92 500680..502032 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig92.18430.1

>prot_Ecto-sp6_S_contig92.18430.1 ID=prot_Ecto-sp6_S_contig92.18430.1|Name=mRNA_Ecto-sp6_S_contig92.18430.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=451bp
MCVICRHAQKPVLVNVAKRTPKTLWSIDRPRIAHESTDSADEGDGSRGAL
GFASRVPRPTIEAISWIRASPCPALRDKLPSEAKRLTFGSNFNHTVVGIR
WPEGLEEIRFGSKFSQPVAGVAWPACLQRLSFGQAFDQSLADGTFPEGLK
EISFGSKFNQSLLPVQDSTDKVEEGGVRWPSALERITLGSYRRSLTGVSW
PPGLLALVLTGEFDLPLAGIKLPGSLEVLEISSTFNHPIDEVDFPRGLKT
LTFGNQFNQAIDKVKFPAGLERLRLGLSFDQPVARVDFPARLSHLSIDSK
VFNHPVSGVSWPDFMTDLHFGDGFNQEINSAALPPRLVRLALGDRFNKPV
LGVAWPPGLRDLSFGHNFNQPVVDVVWPSSLRRLRFGARFKQCLSGTDWP
TGLETLDLGHCHMTWGCGPKEGYENWSPRLEIISRKRISTLGWQRKEECR
*
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mRNA from alignment at Ecto-sp6_S_contig92:500539..502759+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig92.18430.1 ID=mRNA_Ecto-sp6_S_contig92.18430.1|Name=mRNA_Ecto-sp6_S_contig92.18430.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2221bp|location=Sequence derived from alignment at Ecto-sp6_S_contig92:500539..502759+ (Ectocarpus species6 EcLAC_371)
GCCGAATCGAGGCCATCGGCGGCCACAACCGACGATGCTGACAGACGTCG
GTACCGTCGAGACGCAGGTCTCCGCGCGGCGGCGGCGTCTGGATGGCTTC
CCTTCGCCGACCTCATCACCTTCCAGCTCGCGTCGTTAGCCATGTGCGTC
ATCTGCCGCCATGCGCAGAAGCCGGTGCTGGTGAACGTTGCCAAGCGGAC
ACCGAAGACGCTCTGGTCGATCGATCGCCCACGGATAGCCCACGAAAGCA
CCGACAGCGCCGACGAGGGCGACGGTAGTAGGGGAGCGCTTGGCTTTGCC
AGCCGTGTGCCTCGCCCGACCATCGAAGCCATCTCCTGGATCCGCGCATC
ACCGTGCCCCGCTCTCCGCGACAAGCTTCCCTCAGAGGCGAAGCGGCTGA
CGTTCGGGAGCAACTTCAACCACACGGTGGTCGGTATCCGCTGGCCCGAA
GGGCTGGAGGAGATCAGGTTTGGGTCCAAGTTCTCTCAGCCCGTCGCCGG
AGTCGCGTGGCCAGCCTGCCTGCAACGACTTTCGTTCGGACAGGCTTTCG
ACCAGTCGCTGGCGGACGGGACGTTTCCCGAAGGCCTGAAAGAAATTTCC
TTCGGCTCAAAGTTCAACCAGAGCTTGCTACCAGTACAAGACAGCACGGA
CAAAGTCGAGGAGGGAGGGGTGCGGTGGCCCTCGGCCCTGGAACGCATCA
CCTTGGGAAGCTACCGTAGGAGCTTGACCGGGGTGTCGTGGCCGCCGGGA
CTCCTTGCTCTCGTACTCACGGGCGAATTCGACCTCCCTCTCGCCGGGAT
AAAGCTGCCGGGCAGCCTGGAGGTGTTGGAGATCTCCTCGACCTTTAACC
ACCCAATCGACGAGGTGGACTTTCCCCGGGGCTTGAAGACGCTGACGTTC
GGGAACCAGTTCAACCAGGCCATAGACAAGGTCAAGTTCCCGGCGGGGCT
GGAAAGGCTGAGGCTCGGGCTGTCGTTTGATCAGCCCGTGGCGCGGGTAG
ACTTCCCGGCGAGACTGTCGCACCTCTCGATCGACAGCAAAGTATTCAAC
CACCCCGTGAGCGGGGTCTCATGGCCAGATTTCATGACGGATCTTCACTT
CGGGGACGGCTTCAACCAAGAAATCAACTCCGCGGCGTTGCCCCCACGAT
TGGTTCGGCTAGCGTTAGGGGACCGCTTCAACAAGCCGGTCCTGGGCGTG
GCTTGGCCTCCCGGGTTGCGTGACCTGTCGTTCGGCCACAACTTCAACCA
GCCCGTCGTGGACGTCGTGTGGCCGTCGTCGCTCAGACGATTGCGCTTCG
GAGCGCGGTTCAAGCAGTGTCTCTCGGGAACAGACTGGCCTACCGGACTG
GAGACGCTCGACCTCGGCCACTGCCACATGACGTGGGGGTGCGGGCCCAA
AGAGGGGTACGAGAATTGGTCACCACGGCTGGAGATTATCTCGCGGAAGC
GCATTAGCACCCTTGGATGGCAGCGGAAGGAGGAATGCCGCTAGTACAAT
ATTCGTCGGAAAGAGTGCATGGACATGTGCTAGCGAGCTTGCTGTCGGTG
CCTCGCCTTTTGTGGAACGTTGAATGTAGGGGCGTCTTGGGCACCAGGTT
TGTCATCGGTCTGCATGCGCTGTTATTCTGTACCCTCCGGTGATGTTAAT
GATGTACATCAAAATAGGGTTGCTTCGCACTTCTGCACGCGTTGTGCCCT
ATATGGGGGCCGCTCTGGTGTTACGACCACAACGGATTGTTGAACGGCAT
GCAGTGGATGCGGAGTGTTTTTATGGAGGGGGGGGGGGGGGTAGGCGGTT
GACAGAACAGTTTCCGACGCGAAACCAACACACCCGCCCATGGAAGAACT
GGCTTGCCACGTGCGCCTATTGTAGACGTTTTCAATCTTTTTGTGGATTT
GGGCTGAGAACGACGGTGGGATATCATTGTATCGCAGTGTTACATCAGTC
GGTGGAGAGAGGACCACCAGTGTTTCGTATTAGCTATGTATTTCGTATCC
AACCATCCAACGTGAGGAATCTTTGGACCAAGCGCTATGCATGTGTCGCA
ACTTACTCATTTCTTCTCTTTTTTAGCACATGTACCCTATCCACCAAAGT
AGTGATTGCCGCGTGGATAGCACACGTTGCATGCCCATGAAACTTGGCCC
GGGGTAATGATGGGGCAACCCAAGCAGTTGGATGTGAGAGCGAGAGAGAA
AGGGAGGGGCCGCGTTCCGGG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig92:500539..502759+

>mRNA_Ecto-sp6_S_contig92.18430.1 ID=mRNA_Ecto-sp6_S_contig92.18430.1|Name=mRNA_Ecto-sp6_S_contig92.18430.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1353bp|location=Sequence derived from alignment at Ecto-sp6_S_contig92:500539..502759+ (Ectocarpus species6 EcLAC_371)
ATGTGCGTCATCTGCCGCCATGCGCAGAAGCCGGTGCTGGTGAACGTTGC
CAAGCGGACACCGAAGACGCTCTGGTCGATCGATCGCCCACGGATAGCCC
ACGAAAGCACCGACAGCGCCGACGAGGGCGACGGTAGTAGGGGAGCGCTT
GGCTTTGCCAGCCGTGTGCCTCGCCCGACCATCGAAGCCATCTCCTGGAT
CCGCGCATCACCGTGCCCCGCTCTCCGCGACAAGCTTCCCTCAGAGGCGA
AGCGGCTGACGTTCGGGAGCAACTTCAACCACACGGTGGTCGGTATCCGC
TGGCCCGAAGGGCTGGAGGAGATCAGGTTTGGGTCCAAGTTCTCTCAGCC
CGTCGCCGGAGTCGCGTGGCCAGCCTGCCTGCAACGACTTTCGTTCGGAC
AGGCTTTCGACCAGTCGCTGGCGGACGGGACGTTTCCCGAAGGCCTGAAA
GAAATTTCCTTCGGCTCAAAGTTCAACCAGAGCTTGCTACCAGTACAAGA
CAGCACGGACAAAGTCGAGGAGGGAGGGGTGCGGTGGCCCTCGGCCCTGG
AACGCATCACCTTGGGAAGCTACCGTAGGAGCTTGACCGGGGTGTCGTGG
CCGCCGGGACTCCTTGCTCTCGTACTCACGGGCGAATTCGACCTCCCTCT
CGCCGGGATAAAGCTGCCGGGCAGCCTGGAGGTGTTGGAGATCTCCTCGA
CCTTTAACCACCCAATCGACGAGGTGGACTTTCCCCGGGGCTTGAAGACG
CTGACGTTCGGGAACCAGTTCAACCAGGCCATAGACAAGGTCAAGTTCCC
GGCGGGGCTGGAAAGGCTGAGGCTCGGGCTGTCGTTTGATCAGCCCGTGG
CGCGGGTAGACTTCCCGGCGAGACTGTCGCACCTCTCGATCGACAGCAAA
GTATTCAACCACCCCGTGAGCGGGGTCTCATGGCCAGATTTCATGACGGA
TCTTCACTTCGGGGACGGCTTCAACCAAGAAATCAACTCCGCGGCGTTGC
CCCCACGATTGGTTCGGCTAGCGTTAGGGGACCGCTTCAACAAGCCGGTC
CTGGGCGTGGCTTGGCCTCCCGGGTTGCGTGACCTGTCGTTCGGCCACAA
CTTCAACCAGCCCGTCGTGGACGTCGTGTGGCCGTCGTCGCTCAGACGAT
TGCGCTTCGGAGCGCGGTTCAAGCAGTGTCTCTCGGGAACAGACTGGCCT
ACCGGACTGGAGACGCTCGACCTCGGCCACTGCCACATGACGTGGGGGTG
CGGGCCCAAAGAGGGGTACGAGAATTGGTCACCACGGCTGGAGATTATCT
CGCGGAAGCGCATTAGCACCCTTGGATGGCAGCGGAAGGAGGAATGCCGC
TAG
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