mRNA_Ecto-sp6_S_contig92.18400.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig92.18400.1
Unique NamemRNA_Ecto-sp6_S_contig92.18400.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig92.18400.1 vs. uniprot
Match: D7FPU7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPU7_ECTSI)

HSP 1 Score: 533 bits (1372), Expect = 6.530e-185
Identity = 269/272 (98.90%), Postives = 271/272 (99.63%), Query Frame = 3 
Query:   54 MKSAVMAAACVSSASAFVAPSLVSSRVTSSAPKTTMMAEVPGSWWTPSDGTKSVALPWADKPLIGDGDMVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLACVGMVAPELVQHPVGFSGFEFAPEFTQMNAFAALSSVPRLGLAQIVILCSLIEVASFTGNLTEKYLYEDDLTKLELKNKSLGKTDYLAGAAKIAPVTENKDQVFEDTVIPGDLGFDPLGLAANGVNPDYALAELKHARLAMIGFLGMAVQQSVDPNGGVLEQFMNWAS 869
            MKSAVMAAACVSSASAFVAPSLVSSRV SSAPKTTMMAEVPGSWWTPSDGTKSVALPWADKPLIGDGDMVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLACVGMVAPELVQHPVGFSGFEFAPEFTQMNAFAALSSVPRLGLAQIVILCSLIEVASFTGNLTEKYLYEDDLTKLELKNKSLGKTDYLAGAAKIAPVTENKDQVFEDTVIPGDLGFDPLGLAANG+NPDYALAELKHARLAMIGFLGMAVQQ+VDPNGGVLEQFMNWAS
Sbjct:    1 MKSAVMAAACVSSASAFVAPSLVSSRVASSAPKTTMMAEVPGSWWTPSDGTKSVALPWADKPLIGDGDMVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLACVGMVAPELVQHPVGFSGFEFAPEFTQMNAFAALSSVPRLGLAQIVILCSLIEVASFTGNLTEKYLYEDDLTKLELKNKSLGKTDYLAGAAKIAPVTENKDQVFEDTVIPGDLGFDPLGLAANGINPDYALAELKHARLAMIGFLGMAVQQAVDPNGGVLEQFMNWAS 272
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BLAST of mRNA_Ecto-sp6_S_contig92.18400.1 vs. uniprot
Match: A0A835Z6C4_9STRA (Light harvesting complex protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6C4_9STRA)

HSP 1 Score: 260 bits (665), Expect = 2.490e-78
Identity = 145/294 (49.32%), Postives = 183/294 (62.24%), Query Frame = 3 
Query:   54 MKSAVMAAACVSSASAFVAPSLVSSRVT--SSAPKTTMMAEVP--------------GSWWTPSDGTKSVALPWADKPLIGDGDMVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLACVGMVAPELVQHPVGFSGFEFAPEFTQMNAFAALSSVPRLGLAQIVILCSLIEVASFTGNLTEKYLYEDDLTKLELKNKSLGKTDYLAGAAKIAPVTENKDQVFE------DTVIPGDLGFDPLGLAANGVNPDYALAELKHARLAMIGFLGMAVQQSVDPNGGVLEQFMNWAS 869
            MK+A +A       +A+ APS+V  + +  ++AP  +  A  P              G+W+   D T S +LPW  KP+IGDGDM+GD GFDPL+L+    D+ WLR AELKHGR+CMLA VG+V PELVQHPVGF GF F  EFTQMNA AAL +VP+ GLAQIV+ C LIE+A+F  N    + YED L+ LE       +  +L G AK            E       +   GDLGFDPLGLAANGV  DYALAE+KHARLAMIG LGM + Q  +P+ GVL+Q ++WA+
Sbjct:    1 MKAAAVALVACGGVAAYQAPSMVFGKKSGGAAAPAKSAKAAGPPAFLRETEPGQGAAGAWYVREDPTLSTSLPWVTKPVIGDGDMIGDVGFDPLSLSK-TFDISWLRAAELKHGRVCMLAAVGLVTPELVQHPVGFDGFSFPAEFTQMNAIAALGAVPKFGLAQIVLACGLIEIATFGSNYNSAFNYEDGLSLLERAKLEGNERTFLTGVAKTTSNINKFGNALEVGFEKPGSDNAGDLGFDPLGLAANGVRSDYALAEIKHARLAMIGVLGMLLGQFYEPSKGVLQQTLDWAA 293
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BLAST of mRNA_Ecto-sp6_S_contig92.18400.1 vs. uniprot
Match: A0A7S1XTT1_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XTT1_9STRA)

HSP 1 Score: 246 bits (627), Expect = 2.000e-72
Identity = 124/223 (55.61%), Postives = 156/223 (69.96%), Query Frame = 3 
Query:  192 PSDGTKSVALPWADKPLIGDGDMVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLACVGMVAPELVQHPVGFSGFEFAPEFTQMNAFAALSSVPRLGLAQIVILCSLIEVASFTGNLTEKYLYEDDLTKLELKNKSLGKTDYLAGAAKIAPVTENKDQVFEDTVIP----GDLGFDPLGLAANGVNPDYALAELKHARLAMIGFLGMAVQQSVDPNGGVLE 848
            P DG  S ALPW+DKP+IGDG + GD GFDP NL++    L WLR AELKHGR+CMLA VG+VAPEL QHP+GF G +FAPEFT+MNAF AL++ P LGLAQI++ C L+E+ +F       + Y+D LTK+E ++   G   +L G AK A   +   +    T +     GD+GFDPLG A NGVNPDYALAELKH R+AM+G LGM +QQS  P+ G+LE
Sbjct:   62 PVDGM-SAALPWSDKPVIGDGTLAGDQGFDPWNLSS-VFPLTWLRAAELKHGRVCMLAAVGLVAPELFQHPIGFEGLKFAPEFTEMNAFKALNTAPGLGLAQILLFCGLVEIFTFGKAYDGTFTYDDGLTKIEKEDIDAGAFKFLTGGAKNAVAADTASKFDGLTTVDEGRAGDIGFDPLGFADNGVNPDYALAELKHGRVAMLGVLGMLIQQSKTPDFGLLE 282
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BLAST of mRNA_Ecto-sp6_S_contig92.18400.1 vs. uniprot
Match: W7TZB5_9STRA (Light-harvesting protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TZB5_9STRA)

HSP 1 Score: 245 bits (625), Expect = 2.180e-72
Identity = 126/238 (52.94%), Postives = 161/238 (67.65%), Query Frame = 3 
Query:  177 GSWWTPSDGTKSVALPWADKPLIGDGDMVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLACVGMVAPELVQHPVGFSGFEFAPEFTQMNAFAALSSVPRLGLAQIVILCSLIEVASFTGNLTEKYLYEDDLTKLELKNKSLGKTDYLAGAAK------IAPVTENKDQVFEDT--VIPGDLGFDPLGLAANGVNPDYALAELKHARLAMIGFLGMAVQQSVDPNGGVLEQFMNWA 866
            G W+   D T S ALPW  +P IGDG +VGD GFDP  L+    D+ WLR AELKHGR+ MLA +GMV PELVQ P GF GF+FAPEF+++NA  ALS+VP LGLAQI++  S +EVA+F+    E++ +ED+LT LE K    G+   L+GAAK      + P     D  F+D    +PGDLGFDP+G   NG+NPDYALAE+KHARLAM+G  GM +Q+ + P G +L Q + WA
Sbjct:   62 GKWYVRDDPTLSTALPWVTRPEIGDGSLVGDFGFDPFGLSK-IFDVNWLRNAELKHGRLAMLATLGMVTPELVQAPAGFEGFKFAPEFSELNAIKALSAVPTLGLAQIILAISFVEVATFSKVYNERFTFEDNLTPLERKKVVQGRFSDLSGAAKTQAKAGVNPFGNAVDVGFQDPEKFVPGDLGFDPVGFTDNGINPDYALAEIKHARLAMLGAAGMLIQEFLQPKG-ILSQTVEWA 297
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BLAST of mRNA_Ecto-sp6_S_contig92.18400.1 vs. uniprot
Match: A0A7R9U4N3_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4N3_9STRA)

HSP 1 Score: 229 bits (584), Expect = 1.720e-66
Identity = 116/228 (50.88%), Postives = 155/228 (67.98%), Query Frame = 3 
Query:  177 GSWWTPSDGTKSVALPWADKPLIGDGDMVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLACVGMVAPELVQHPVGFSGFEFAPEFTQMNAFAALSSVPRLGLAQIVILCSLIEVASFTGNLTEKYLYEDDLTKLELKNKSLGKTDYLAGAAK--IAPVTENKDQVFEDT--VIPGDLGFDPLGLAANGVNPDYALAELKHARLAMIGFLGMAVQQSVDPNGGVLE 848
            G W   +    S ALPW+DKP+IGDG++ GD GFDP  L+     L WLR AE+KHGR+CMLA VG++APELVQ+PVG+ G +F P F +MNAF AL +VP LGLAQIV++  L+E+ S   N    + ++D LT +E  +   G   +L G AK  +A  T++K +  + T  V PGDLGFDPLG A +G+ P++A AE+KHARLAM+G LGM +QQ+  P  G+LE
Sbjct:   56 GQWLPKTKEGMSQALPWSDKPVIGDGNLAGDRGFDPWGLSK-IFPLAWLRAAEIKHGRVCMLAAVGLIAPELVQNPVGYEGLQFDPVFQEMNAFKALGTVPGLGLAQIVLVAGLVEIFSIKSNYEGTFTFDDGLTSIERSDIDSGAFKFLTGGAKNALAADTKSKFETLQVTEQVSPGDLGFDPLGFADDGIKPEFAEAEIKHARLAMLGTLGMLIQQAKTPEFGLLE 282
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BLAST of mRNA_Ecto-sp6_S_contig92.18400.1 vs. uniprot
Match: A0A0G4G8I9_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4G8I9_VITBC)

HSP 1 Score: 218 bits (556), Expect = 2.640e-62
Identity = 116/241 (48.13%), Postives = 159/241 (65.98%), Query Frame = 3 
Query:  177 GSWWTPSDGTKSVALPWADKPLIGDGDMVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLACVGMVAPELVQHPVGFSGFEFAPEFTQMNAFAALSSVPRLGLAQIVILCSLIEVASFTGNLTEKYLYEDD----LTKLELKNKSL---GKTDYLAGAA--KIAPVTENKDQVFEDTV--IPGDLGFDPLGLAANGVNPDYALAELKHARLAMIGFLGMAVQQSVDPNGGVLEQFMNWA 866
            G W+   D   S ALPW  +P IGDG++VGD GFDP  L+    ++ WLR AELKHGR+CMLA VG++APELVQ P GF G +F P F++++ + AL+++P  G+AQI+I  +LIE+       T KYLY       L  L L+ ++L   G T +LAG A  ++  + E + +   D V  +PGDLG+DPLGLA NG+  D+ALAE+KHARLAMIG LGM +Q  ++PN  +L+Q + WA
Sbjct:   62 GQWYVRDDPNISPALPWVSRPTIGDGNLVGDFGFDPFGLSK-LVNIQWLRNAELKHGRVCMLASVGLLAPELVQRPEGFKGIDFVPAFSELSPYKALTALPPAGIAQIIIAIALIELT------TAKYLYNPTTKIKLADLTLRERALVQTGNTRFLAGGAFAELGRLGEERIEERPDAVSRVPGDLGWDPLGLADNGIREDWALAEIKHARLAMIGTLGMMLQAFIEPNKPILQQTIEWA 295
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BLAST of mRNA_Ecto-sp6_S_contig92.18400.1 vs. uniprot
Match: A0A0G4FH94_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FH94_VITBC)

HSP 1 Score: 202 bits (514), Expect = 1.710e-56
Identity = 115/235 (48.94%), Postives = 151/235 (64.26%), Query Frame = 3 
Query:  192 PSDGTKSVALPWADKPLIGDGDMVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLACVGMVAPELVQHPVGFSGFEFAPEFTQMNAFAALSSVPRLGLAQIVILCSLIEVASFTGNLTEKYLYEDDL----TKLELKNKSL---GKTDYLAGAAKIAPVTENKDQVFEDTV----IPGDLGFDPLGLAANGVNPDYALAELKHARLAMIGFLGMAVQQSVDPNGGVLEQFMNW 863
            PSD   S+ALPW  KP IGDG +VGD GFDPL L+   AD+ +LR AELKHGR+CMLA VG++APELVQ P GF G EF P F++MN F AL ++P  GL QI+I  +LIE+       T K+L++  +    T +  K + L   G T +LAG+A+    +   + V E +     +PGDLGFDPLGLA  G+  D+ALAE+KH RLAM+  LGM +Q    P+ G+LE   +W
Sbjct:   49 PSD--VSLALPWVAKPQIGDGTLVGDFGFDPLGLSK-IADVGFLRNAELKHGRLCMLAAVGLLAPELVQKPAGFDGLEFVPAFSEMNPFKALFAMPPAGLMQILIAIALIELN------TAKFLWDPSMKMRITDMSEKERLLVQTGNTRFLAGSARPQLASLGNEVVMEKSGMFSRVPGDLGFDPLGLADEGIREDWALAEIKHGRLAMLAVLGMLLQVGARPDKGILEMTGDW 274
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BLAST of mRNA_Ecto-sp6_S_contig92.18400.1 vs. uniprot
Match: A0A0G4HNT2_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HNT2_9ALVE)

HSP 1 Score: 169 bits (428), Expect = 4.830e-44
Identity = 97/231 (41.99%), Postives = 125/231 (54.11%), Query Frame = 3 
Query:  177 GSWWTPSDGTKSVALPWADKPLIGDGDMVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLACVGMVAPELVQHPVGFSGFEFAPEFTQMNAFAALSSVPRLGLAQIVILCSLIEVASFTGNLTEKYLYEDDLTKLELKNKSLGKTDYLAGAAKIAPVTENKDQVFEDTVIPGDLGFDPLGLAANGVNPDYALAELKHARLAMIGFLGMAVQQSVDPNGGVLEQFMNWAS 869
            G+W+   D   S + PW  K  I DG + GD GFDPL L+    D  W+RTAELKHGRI MLACVG++ PEL+  P GF G  F P F  +    AL   P LG+ QI ++ +LIE        T KY+          KN       Y+    K +      D+ FE    PG +GFDP G A NG+  D+A AE+KHARLAM+G  GM +Q  + P+  +LEQ   WA+
Sbjct:   84 GAWYIVQDPEISKSAPWVKKEQIYDGTLAGDYGFDPLRLSER-RDAWWMRTAELKHGRIAMLACVGLLTPELILKPEGFKGLNFVPAFDAVAPLEALRKAPPLGILQIALVLALIEFQ------TLKYV----------KNPMEYLQPYMDKGIKFS------DEYFEKRT-PGSIGFDPAGFADNGIRSDFAEAEIKHARLAMVGAAGMLIQSLIKPDMPILEQTSKWAA 290
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BLAST of mRNA_Ecto-sp6_S_contig92.18400.1 vs. uniprot
Match: A0A8J6CE65_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CE65_DIALT)

HSP 1 Score: 131 bits (329), Expect = 6.260e-31
Identity = 92/220 (41.82%), Postives = 112/220 (50.91%), Query Frame = 3 
Query:  210 SVALPWADKPLIGDGDMVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLACVGMVAPELVQHPVGFSGFEFAPEF--TQMNAFAALSSVPRLGLAQIVILCSLIEVASFTGNLTEKYLYEDDLTKLELKNKSLGKTDYLAGAAKIAPVTENKDQVFEDTVIPGDLGFDPLGLAANGVNPDYALAELKHARLAMIGFLGMAVQQSVDPNGGVLEQFMNW 863
            S ++P+A KP   DG ++GD GFDPL L+N   D+ WLR AE+KHGR+ MLA  G     LVQ      G    PE   T      ALS+ P LGLAQIV L  LIE+ + +  L     YED      LK                AP              PGDLG+DPLGL+A G+N DYA+AELKH RLAM+G  GM     V     + EQ  +W
Sbjct:   48 SASIPFAPKPAKLDGTLLGDIGFDPLGLSN-LWDIKWLRAAEIKHGRVGMLAATGF----LVQEGYRLPGPASNPELFATAKTPLEALSTAPPLGLAQIVALIFLIELVTSSSLLITDSFYEDSPN---LK----------------APAGSGS---------PGDLGWDPLGLSAGGLNLDYAIAELKHGRLAMLGAAGMLAGSLVSGKS-ISEQTYDW 233
[Close]
BLAST of mRNA_Ecto-sp6_S_contig92.18400.1 vs. uniprot
Match: A0A7S1TMR6_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TMR6_9RHOD)

HSP 1 Score: 126 bits (316), Expect = 1.310e-29
Identity = 82/221 (37.10%), Postives = 108/221 (48.87%), Query Frame = 3 
Query:  207 KSVALPWADKPLIGDGDMVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLACVGMVAPELVQHPVGFSGFEFAPEFTQMNAFAALSSVPRLGLAQIVILCSLIEVASFTGNLTEKYLYEDDLTKLELKNKSLGKTDYLAGAAKIAPVTENKDQVFEDTVIPGDLGFDPLGLAANGVNPDYALAELKHARLAMIGFLGMAVQQSVDPNGGVLEQFMNWAS 869
            KS A+P+ +KP   DG + GDAGFDPL L+    +L +LR AELKHGRICMLA +G V  E+V+ P         P F + +A  A+  VP     QI+   S+IE+ +F  N                                           ++D+  PGD GFDPL L  +GV   Y L E+K+ RLAMI F+G   QQ V   G V+EQ  N+ S
Sbjct:   32 KSQAIPFLEKPDTLDGSLAGDAGFDPLRLSKY-LNLKYLRAAELKHGRICMLATLGWVVQEIVRLP--------GPMFQEKHALQAIYKVPLASWVQIIAFISIIELVTFRSN-------------------------------------------YDDSSAPGDYGFDPLNLGKSGVIERYQLNEIKNGRLAMIAFMGFLFQQLVTGQG-VIEQLANFKS 199
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig92.18400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPU7_ECTSI6.530e-18598.90Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
A0A835Z6C4_9STRA2.490e-7849.32Light harvesting complex protein n=2 Tax=Tribonema... [more]
A0A7S1XTT1_9STRA2.000e-7255.61Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
W7TZB5_9STRA2.180e-7252.94Light-harvesting protein n=2 Tax=Monodopsidaceae T... [more]
A0A7R9U4N3_9STRA1.720e-6650.88Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
A0A0G4G8I9_VITBC2.640e-6248.13Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A0G4FH94_VITBC1.710e-5648.94Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A0G4HNT2_9ALVE4.830e-4441.99Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A8J6CE65_DIALT6.260e-3141.82Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A7S1TMR6_9RHOD1.310e-2937.10Hypothetical protein n=1 Tax=Erythrolobus australi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig92contigEcto-sp6_S_contig92:206060..209679 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score115.9
Seed ortholog evalue2.9e-23
Seed eggNOG ortholog2880.D8LKC5
Preferred nameLHCA1
Model size1975
KEGG koko:K08907
KEGG Pathwayko00196,map00196
Hectar predicted targeting categorychloroplast
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0006950,GO:0008150,GO:0008152,GO:0009266,GO:0009314,GO:0009409,GO:0009416,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009628,GO:0009637,GO:0009639,GO:0009642,GO:0009644,GO:0009645,GO:0009765,GO:0009768,GO:0009941,GO:0009987,GO:0010114,GO:0010218,GO:0010287,GO:0015979,GO:0016020,GO:0016168,GO:0019684,GO:0019904,GO:0031409,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046906,GO:0048037,GO:0050896,GO:0055035,GO:0097159,GO:1901363
Exons2
EggNOG free text desc.photosynthesis, light harvesting
EggNOG OGs28MEX@1,2QTYF@2759
Ec32 ortholog descriptionLight harvesting complex protein
Ec32 orthologEc-18_001730.1
Cds size819
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350560.1344652-UTR-Ecto-sp6_S_contig92:206059..2061121682350560.1344652-UTR-Ecto-sp6_S_contig92:206059..206112Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig92 206060..206112 +
1682350560.1687179-UTR-Ecto-sp6_S_contig92:208576..2096791682350560.1687179-UTR-Ecto-sp6_S_contig92:208576..209679Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig92 208577..209679 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350560.1463335-CDS-Ecto-sp6_S_contig92:206112..2062241682350560.1463335-CDS-Ecto-sp6_S_contig92:206112..206224Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 206113..206224 +
1682350560.1573305-CDS-Ecto-sp6_S_contig92:207869..2085761682350560.1573305-CDS-Ecto-sp6_S_contig92:207869..208576Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 207870..208576 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig92.18400.1prot_Ecto-sp6_S_contig92.18400.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig92 206113..208576 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig92.18400.1

>prot_Ecto-sp6_S_contig92.18400.1 ID=prot_Ecto-sp6_S_contig92.18400.1|Name=mRNA_Ecto-sp6_S_contig92.18400.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=273bp
MKSAVMAAACVSSASAFVAPSLVSSRVTSSAPKTTMMAEVPGSWWTPSDG
TKSVALPWADKPLIGDGDMVGDAGFDPLNLANGPADLVWLRTAELKHGRI
CMLACVGMVAPELVQHPVGFSGFEFAPEFTQMNAFAALSSVPRLGLAQIV
ILCSLIEVASFTGNLTEKYLYEDDLTKLELKNKSLGKTDYLAGAAKIAPV
TENKDQVFEDTVIPGDLGFDPLGLAANGVNPDYALAELKHARLAMIGFLG
MAVQQSVDPNGGVLEQFMNWAS*
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mRNA from alignment at Ecto-sp6_S_contig92:206060..209679+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig92.18400.1 ID=mRNA_Ecto-sp6_S_contig92.18400.1|Name=mRNA_Ecto-sp6_S_contig92.18400.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3620bp|location=Sequence derived from alignment at Ecto-sp6_S_contig92:206060..209679+ (Ectocarpus species6 EcLAC_371)
TCACACAAGCCCTTTGTAACTCTCTCTATCTCTCCTCTCAACCCGTTCCA
AAGATGAAGTCCGCTGTGATGGCCGCCGCATGTGTATCCTCAGCGTCTGC
CTTTGTGGCACCGTCGCTCGTGTCGTCGCGCGTGACGTCTTCCGCGCCCA
AGACCACCATGATGGGTGAGTTTCGTCATCTCTACAACAATCGATCGTGG
GGCGAAGCCCGCCAGCCTACCAGTTTGCATGCATCTGTTTCGCAGTTGAC
ATTGGGTGCTGGTGCTGACATGATCACCATGGCCCCCCCTTCTATGTGTT
TTCTCCTCTGTTCTGCTTCCTCCCGTTTTCCAGGGGTGCCCTTGAATGTC
CAGATGTTGTTGCATGTAAGGTATTCCTGTCCTTGTTGTTGTTGACCCTG
GGCTCCTTGAAGGGATGCTGACTCAAGGTTCGGCTGTAGACACTGGCGTT
GACGGTGACTGGAGGACACCAGTTGGCGGCCTTAGCATAGTCGTGTTTCA
AAGTGACACGCTGCGTCGAACCCATCAGTATCTCCCATCTATGCATTCTT
ATCTGGGAATGCTGCTTGTGAGTTGCGAGTCCCAAAGAACACACGAAGAC
AACGTCACGAGAAAAATGTATTTTACTTCGCAATGAACACATGCCTAGAT
CGGCGAATCAACGTCATAATGAACGGGGTGGAATCACGTGGCTCATGTAA
AAATTCAAGCTAAATTACACGAAAGAAGAAACGAATTCGAGTTGAAGAGG
AAGCCCTCCTGCACTCACGTATGTGACTACGTGTGAGACATGTTCTCTCT
GCGAGCTTGATTGGTCGATGCTACTCTTGGGGATGTGTCCATTATATTGT
AGCCGCTCTTTTCGCCGACAAAAATGTTGAGTGTTTTCTACACACGTGAT
AATATACTTGTTGTAGTAGGGGGACATACCGCGAAGGGTCGGGGGGGAGG
GCGGCGGCAAGAATACCCTCGCACTGAAGACTATCAACCTCGGCACCGAA
TTTGGTGATATATTCACCACGACGTCAGTTGGGTGTTGTATCTAACAGCA
ATTCTGCTGACGGAGAGAGAGGAGAGCGAAGGACGCATATGATTTCTCAA
ACATGGGCTTGCAGAGTAATGGAAATTTGTTCATACTACCTGTAGAGTCA
TGGAAACATTTTTCATACTACCTGTACTGTAGTGTCTGTCATGTCCGCGT
GAGGTACCAAATGGTGAGACCCCATACCTGTACATCGGTCACACATGGTC
CTTAAGGTGGCGAGGAGTCGTCTCAGTAAATCAACACTTGCTGGGCCCAC
ACAAGCAGCAGCAGACCTCGTGATGATAGTCTTCAGAACATGTGCGCTGA
AGCAACAACTCCTTTTTGCTGTTGTTCTTGGGTTTTCGGCTAATGCCCAT
TGCTCGCCGTTGCACGCATTCCGTCGGTTAGAACATTCGAGCGCCTGTTT
GTTGTTGCATTGAGTTGTCCGATTCCTTGACCACTGGGCCTTATAGCCGC
TCGACGACGAGTCAACCGGACGCCGACCCATGCCCTCCAGAATGTATGCT
TGAAATGGTATATACATCGAAGGGAAGTCCGGCAAATGTTGGTGCGCGAG
ATTGCGTTAGCTACCGTTGAGTGAAGACCATAAGCGTTGCCTTGTCTCGA
AACGGATGGGCGGCCAACAGCAGTCCAGTAAAAAAAACCCTTGCACGTGC
AGAGCTCGTACAAGGACACATTGGACACCTTGCATGCCCTTTTGGAATCA
TGAGGCCCACTCATCCTACCCCCGCCACTTTTTCTCCTCCTTTGCCCTCG
TCTGTTGCAGCCGAGGTACCAGGATCGTGGTGGACTCCGTCCGACGGAAC
CAAGTCCGTGGCCCTCCCGTGGGCGGACAAGCCGCTCATCGGCGACGGAG
ACATGGTGGGCGACGCTGGCTTTGACCCGCTCAACTTGGCGAACGGACCC
GCGGACCTCGTCTGGCTCCGGACAGCAGAGCTCAAGCACGGCCGCATCTG
CATGCTGGCGTGCGTGGGCATGGTCGCCCCCGAGCTTGTCCAGCACCCCG
TGGGCTTCTCCGGGTTCGAGTTCGCGCCCGAGTTCACGCAGATGAACGCG
TTCGCCGCGCTGTCCTCCGTACCTCGGCTGGGCCTCGCGCAGATCGTCAT
CTTGTGCTCGCTCATCGAGGTGGCCTCCTTCACGGGAAACCTCACCGAGA
AGTACTTGTACGAGGACGACTTGACCAAGCTGGAGCTCAAGAACAAATCG
CTCGGCAAGACCGACTACCTCGCGGGCGCGGCTAAGATTGCCCCCGTGAC
GGAGAACAAGGATCAAGTCTTCGAGGACACCGTCATCCCCGGGGACCTCG
GCTTCGACCCCCTCGGCCTCGCGGCCAACGGCGTCAACCCCGACTACGCC
CTGGCGGAGCTCAAGCACGCCCGTCTCGCAATGATCGGATTCCTCGGCAT
GGCTGTGCAGCAGTCCGTAGACCCCAACGGTGGTGTGCTCGAGCAGTTCA
TGAACTGGGCATCGTAGACACATGACGATGATTGGTTTAATTTTTCGTCC
CTTGTTTCGGCGCTGTAGACGCGAGGCTGGCAAGATACCTTATGGGGTTG
GGGGAGTTCATCAAGACTTGAAACCTGGCGCGGGCTCTCGTATGTTTTTG
GCTTGCGATCGTGTGGTGCCACCGTCAGGCGTCTGAACCGCTTTTTTGCC
ACGTGACCGACCGTAGATTATCGGTTTCTGGCGAGTTAATTTAAGACTTG
CTCGGGCGAGGCTACTTTTTACCTGTTGTAGACAAGACAAACGGCTAGGA
AAAGCGTGCATTACTCGGCGCACCTCCTTTTCTCTCCGCTTCGTGTTAAT
GTGCAACCGTTGCTAAGCAAGGGTGTCGGTTGCCGATTTGTCGGATGTGG
GGAAACCAGTAGCCGCGCGCTTGCTTGTCGGCCGGGCCTCTACTGGGGAA
CATTTCGTGTCGTGTGCGTGCGAAACGGGAGGGAGTTAGTTACCTTGGAA
GCCCGCTGTTTTTTGCTTTCGCCTACATGATGTTCCATTGTCTTGTTTTT
GTATCCGTTCTCTTATTTTGTGGCCAGAGCCTTGCCAGCTTAGATGATGG
CTCGCCGTGTGTTCTTCTGTGACGATGATCAGATGAAAAATGAAGAAATG
CGAAACGGGTGTTTAGTTGGCTCTCCTGCCAGTCACCGGCACAAGATTGT
GTGATGCCTCTCTCGCCGAGTGGAGACTGCGCCGATTACGTCTCTGAATG
ACTTGACATCCCGTGCGACTGTAGTGTTGTCGTACGGGTAGTCGAGCTGT
GTATCCACCACCTCCGTATGTACCACATATCTCGGTGGACCGTGAATGAA
TCGCGTCCTTTTTTCCGCGATATCACAGCAAAATGTAGCAGTCCGTACGT
CTTGGTGTATGGCCCCAACACCAGCAGCAATGGAACTGCGTTGATTGATG
TATATAGCGCTCGTGGGATTTTATTCGCTGTGCTGACTTGGCACCACTGC
TAGGCCCTCAGATGTTTATGTTTCCATCGGTGGGCAGCCGAGTGTTGCTG
TCACCCCGTTCAAATCCATCAAGGTCGAGGTCTCTAACGGAACGACCTGT
GTCTTGCCTGTTGTCTTCTG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig92:206060..209679+

>mRNA_Ecto-sp6_S_contig92.18400.1 ID=mRNA_Ecto-sp6_S_contig92.18400.1|Name=mRNA_Ecto-sp6_S_contig92.18400.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=819bp|location=Sequence derived from alignment at Ecto-sp6_S_contig92:206060..209679+ (Ectocarpus species6 EcLAC_371)
ATGAAGTCCGCTGTGATGGCCGCCGCATGTGTATCCTCAGCGTCTGCCTT
TGTGGCACCGTCGCTCGTGTCGTCGCGCGTGACGTCTTCCGCGCCCAAGA
CCACCATGATGGCCGAGGTACCAGGATCGTGGTGGACTCCGTCCGACGGA
ACCAAGTCCGTGGCCCTCCCGTGGGCGGACAAGCCGCTCATCGGCGACGG
AGACATGGTGGGCGACGCTGGCTTTGACCCGCTCAACTTGGCGAACGGAC
CCGCGGACCTCGTCTGGCTCCGGACAGCAGAGCTCAAGCACGGCCGCATC
TGCATGCTGGCGTGCGTGGGCATGGTCGCCCCCGAGCTTGTCCAGCACCC
CGTGGGCTTCTCCGGGTTCGAGTTCGCGCCCGAGTTCACGCAGATGAACG
CGTTCGCCGCGCTGTCCTCCGTACCTCGGCTGGGCCTCGCGCAGATCGTC
ATCTTGTGCTCGCTCATCGAGGTGGCCTCCTTCACGGGAAACCTCACCGA
GAAGTACTTGTACGAGGACGACTTGACCAAGCTGGAGCTCAAGAACAAAT
CGCTCGGCAAGACCGACTACCTCGCGGGCGCGGCTAAGATTGCCCCCGTG
ACGGAGAACAAGGATCAAGTCTTCGAGGACACCGTCATCCCCGGGGACCT
CGGCTTCGACCCCCTCGGCCTCGCGGCCAACGGCGTCAACCCCGACTACG
CCCTGGCGGAGCTCAAGCACGCCCGTCTCGCAATGATCGGATTCCTCGGC
ATGGCTGTGCAGCAGTCCGTAGACCCCAACGGTGGTGTGCTCGAGCAGTT
CATGAACTGGGCATCGTAG
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