mRNA_Ecto-sp6_S_contig92.18394.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig92.18394.1
Unique NamemRNA_Ecto-sp6_S_contig92.18394.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig92.18394.1 vs. uniprot
Match: A0A162XCC7_PHYB8 (Uncharacterized protein n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A162XCC7_PHYB8)

HSP 1 Score: 54.7 bits (130), Expect = 2.820e-5
Identity = 50/189 (26.46%), Postives = 89/189 (47.09%), Query Frame = 2 
Query:   68 DEHEAEAVLLRRLDALERLVFGRSCSAASSGTASLGREVEPLAAKVKAISRSVARAEGGDRNLQD-IAAQAARLGLLSPLPSTTTAASTHNVA-LKENILYAAREEIETTARLLSQVKTLQEHVNPPYLKDMPQLTAHLSRLEGTYVQQATEVARINERAENALLHYSEAVNLVSEKFVHWDDQVAELE 628
            DEH  EA    RL  +E ++ G+     +  T        PL  ++ A+ + +     G++ +QD I        LL+P  ST            K  ++ AA E++ET A+ + QVK+L+  V+    + +  L   L+ LE  +  QA E+  +  +  + + +Y+  +N +SE F+ WDD +  +E
Sbjct:    2 DEHGFEA----RLRHVEHILVGQQALYLARATKL------PLLQRMDALRKELQTVYKGNKGIQDFIDKYDVHAKLLNPANSTFLMEREFLAPEAKLELVMAALEDMETFAKQVKQVKSLEHVVSGVDFEAVQTLGPQLTPLEAIHSDQARELNELTHKVSSLMDNYNGLINTLSEIFISWDDILGTME 180
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig92.18394.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A162XCC7_PHYB82.820e-526.46Uncharacterized protein n=1 Tax=Phycomyces blakesl... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig92contigEcto-sp6_S_contig92:173338..176462 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeMetazoa
Stop1
Start1
Seed ortholog score62.0
Seed ortholog evalue3.7e-07
Seed eggNOG ortholog176946.XP_007430245.1
Preferred nameDCTN3
Model size956
KEGG koko:K10425
Hectar predicted targeting categoryother localisation
GOsGO:0000086,GO:0000278,GO:0000910,GO:0002376,GO:0002478,GO:0002495,GO:0002504,GO:0003674,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005869,GO:0005875,GO:0006810,GO:0006888,GO:0006996,GO:0007017,GO:0007049,GO:0007346,GO:0008150,GO:0009987,GO:0010389,GO:0010564,GO:0015629,GO:0015630,GO:0016043,GO:0016192,GO:0019882,GO:0019884,GO:0019886,GO:0022402,GO:0022406,GO:0022607,GO:0030030,GO:0030031,GO:0031974,GO:0031981,GO:0032991,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044770,GO:0044772,GO:0044782,GO:0044839,GO:0046907,GO:0048002,GO:0048193,GO:0048471,GO:0050789,GO:0050794,GO:0051179,GO:0051234,GO:0051301,GO:0051640,GO:0051641,GO:0051649,GO:0051726,GO:0060271,GO:0061640,GO:0065007,GO:0070013,GO:0070925,GO:0071840,GO:0097711,GO:0120031,GO:0120036,GO:0140056,GO:1901987,GO:1901990,GO:1902749,GO:1903047
Exons5
EggNOG free text desc.cytoskeleton-dependent cytokinesis
EggNOG OGs2AG3V@1,2RYZ0@2759,39BND@33154,3BKV9@33208,3CUG7@33213,484BN@7711,490FN@7742
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-18_001790.1
Cds size609
COG Functional cat.S
Best tax levelVertebrata
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04812
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig92.18394.1prot_Ecto-sp6_S_contig92.18394.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig92 173381..176158 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350559.6110795-UTR-Ecto-sp6_S_contig92:173337..1733801682350559.6110795-UTR-Ecto-sp6_S_contig92:173337..173380Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig92 173338..173380 +
1682350559.670815-UTR-Ecto-sp6_S_contig92:176158..1764621682350559.670815-UTR-Ecto-sp6_S_contig92:176158..176462Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig92 176159..176462 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350559.6228251-CDS-Ecto-sp6_S_contig92:173380..1734131682350559.6228251-CDS-Ecto-sp6_S_contig92:173380..173413Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 173381..173413 +
1682350559.6326842-CDS-Ecto-sp6_S_contig92:174497..1746961682350559.6326842-CDS-Ecto-sp6_S_contig92:174497..174696Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 174498..174696 +
1682350559.641903-CDS-Ecto-sp6_S_contig92:175286..1754631682350559.641903-CDS-Ecto-sp6_S_contig92:175286..175463Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 175287..175463 +
1682350559.6510687-CDS-Ecto-sp6_S_contig92:175675..1757911682350559.6510687-CDS-Ecto-sp6_S_contig92:175675..175791Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 175676..175791 +
1682350559.6606727-CDS-Ecto-sp6_S_contig92:176074..1761581682350559.6606727-CDS-Ecto-sp6_S_contig92:176074..176158Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 176075..176158 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig92.18394.1

>prot_Ecto-sp6_S_contig92.18394.1 ID=prot_Ecto-sp6_S_contig92.18394.1|Name=mRNA_Ecto-sp6_S_contig92.18394.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=203bp
MATSPRHEDEHEAEAVLLRRLDALERLVFGRSCSAASSGTASLGREVEPL
AAKVKAISRSVARAEGGDRNLQDIAAQAARLGLLSPLPSTTTAASTHNVA
LKENILYAAREEIETTARLLSQVKTLQEHVNPPYLKDMPQLTAHLSRLEG
TYVQQATEVARINERAENALLHYSEAVNLVSEKFVHWDDQVAELERQHAS
RS*
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mRNA from alignment at Ecto-sp6_S_contig92:173338..176462+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig92.18394.1 ID=mRNA_Ecto-sp6_S_contig92.18394.1|Name=mRNA_Ecto-sp6_S_contig92.18394.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3125bp|location=Sequence derived from alignment at Ecto-sp6_S_contig92:173338..176462+ (Ectocarpus species6 EcLAC_371)
GGGCTGCCCTCCACATTGTATCATAGGTCACCTCTTCACCCTCATGGCAA
CGAGCCCACGACACGAGGACGAACATGTAAGATTGACGACGGAAACGGTT
GCAGTTCCTGGGATTTCTTGTGTTTGTAAGAGGATATGCGTGCGGTCCGA
GCAAGAGAGATGCAGCACAACTTTTTTGCACAGCAGTACAATGGAGCGTT
CTTCCAAAATCACCGATCCGATGCTACTACACTGCTACTGGTGTTGTTGC
ACCTGTCCTTTCATCTTGTGTGCTGTGCTGCTGCCCTCCCCTGTAAACCT
GTACCGTAGAACCATCATCCACATGCATTCCACAATGGAGGTTATCTATT
GTTTCTGCAGGTTTCTGCTATTAGCGGTCGAATGTACACTACTGCTATGT
ACATGTTACCGGGAAGCAGCATTTCTACGAGCGCGTACTGCTGAGGTTTC
GCGTGATTCGATCATCGGCAAGGCATTCCAATGTCTATACAACGAGACCC
TTGAGTACTGAGCGATTTGGAGGACTCTACGACATGTCTAGGGAGTTGCA
ACACCAGGGTGGAGTGAAAATGGTTCGACATGCAGGTTTGTAGGCTCGTG
ATCGTTTCTGATTTCATTTTTTGGGGGGGGGGCGTTGACGACGATCCCCG
CAGTGGCGCAACATTGTGCACACCATGTGTTCATCCTAACGTACTTGTAT
TCCATAGATCTACACTTGCGGACCGGCCGGCAGTGGCGCGAAAGTTGCCG
CCAGAAAACTGCGACAAGCATTCGCCTGCAGCAGCAGACTGAACTCAGCT
CAGACATGTATCATGGCGCTGCATGTCGCGTTGAAAGAGGGATGACAAGA
GGGCGTCAGCAACTCGCGGTTGGGGTTATGACTTTCTTGCCACACCTCTC
TACTTTGGTGGCAAGCGGTGGCCGGTCTGAGGAGCACGAAGTGATGCCCC
ACTCGGGGCTGTCCACTTGGGGGAGGGGCCGACAACGCAACACGACATCA
CAACGGTTGAAGAGTCATACGTACAATTTGTTCAATGTTTCCTCATGTGT
GGGACACATGACCGTCTGCGGATGCCCGGTTTTAATACTCACTCGTACGT
GCCTCACCCACTCTGACGTAAAGCTTGTGTTGGAATGGTCTTGCTGTTTT
CGTTTTCCAGGAAGCCGAGGCCGTGTTGCTCCGTCGGTTGGATGCCTTAG
AGCGACTTGTCTTTGGCCGATCATGTTCGGCCGCTTCTTCGGGTACCGCT
AGCCTGGGTCGAGAAGTGGAGCCTCTAGCAGCCAAGGTCAAGGCCATCTC
TAGGAGCGTAGCGCGAGCCGAAGGAGGTGATCGGAATCTCCAGGACATCG
CAGCACAAGGTGATGGGAATTGCTGCTCCGGTAGGCTGTATGTATGGGAG
AAGACAATGGGGCGTTTGGATCCCACTTGTGAAGCTTGTCAAAACCTGTT
GTAACGGTGTACTAAAGGAATGCTGTTGCCGTTGTAGGAAAACGTCAGCT
GGAGTCTCTGGTTGGGAGATTGGGAGTAAGTAACGTTACCACTGTGTGAA
TTTGGTGGGGAAGACATGTGTTCCGGAACCAGAAACGCAGGCCATCGGAA
CAACCCACTACGTACGTAAGATCCTGACAAGCGAACAAAAGCACCGGTAA
GGCAGCGCGGTTTTCTGGAAGCGTGCGCGCCGAATCTTGTTTGCATCTGT
CTATCAGCCTGCCTTCGTCTCGCCCTCCTCCATCACCGGGGTTCTTTAGT
TTTCGGGTTCCACTGTTCTTTCGCCTCCCACTCTTGCATGTTTCGTCCCC
GTAGCACGAAGCACGAAGCTCACTAGTTCCCTTGCATCACCAAGGTACGT
GCTAGACAACCGCAACTCGAAACCTACCCCGCTTGCCACTCAGGGTGCCC
CTCTAACGGTCGTATTCCGCCTTTTCACGCCGCCCATCCTCTGTACCAGC
TGCACGCCTGGGGCTACTTTCGCCGCTGCCATCTACGACAACTGCAGCGT
CCACCCACAACGTGGCGCTCAAGGAAAACATCTTGTACGCGGCGAGAGAG
GAGATCGAGACCACCGCGCGCTTGCTGTCACAAGTCAAGACTTTGCAGGA
ACACGTCAACCCTCCGTACCTTAAAGGTGACGGGTTTTGCACAAGTGGAA
GTAGAAGTCAAGCGTATAGGGTTGCAAGTGGGCTGCCCGCCCTTCGTCGG
GTAGGTAGCATTCCACACGTGGAAGGTCCTAGCTAGATTTGGTTGGGGTC
TCGACCACTATCCATTACACATCGAAGCCCAGCACTCATGCTTGACTCCC
ATCCCCTGGTTTGACCCATGCCTCACTGTTGCAACCAGATATGCCGCAGT
TGACTGCACACCTGAGCCGGTTGGAAGGCACCTATGTCCAGCAGGCAACG
GAGGTAGCCCGAATAAACGAGCGCGCCGAGAACGCTCTGCTCCACTACAG
TGAGGTAACGCGCGATTTCTTCGTACGGGGTTGTGACGGAACCGGAATGG
CACCGCTTGGATGGTACGCCGCCCCCAAAACCTATAGTAGTTTTCTTCCA
AGACGCTGGAGGCGAACTCACATATTTTGAAAGAAAGTATGCATACAGCC
GTACTAATACCAATATTTTTGCTCTTGTTTTTCTTCCCGGCTTGGGCCAG
CACTCGCTTGATCAACCTGCCTGGTAAAACGAATCTCGCCTGCGAAGTGG
TCTGACGATGTTCCATCTTTTTTTGTTGTTCCATCAGGCGGTGAATCTTG
TGTCGGAGAAGTTCGTGCACTGGGACGATCAAGTCGCGGAACTGGAGCGG
CAACACGCGTCTCGATCGTAGACCAATGTATTATATCCTCTGCACACTCA
AAGATCGCCTGGGTAGCGGAATATTGTGAACTGTGAACTTAATTGGTGTT
GATGTAAGTGCGCGTGCGTGCGAGGGTACAGTTCTCCAATGCCGGTGTGC
GTCTTACAGAATACGAAACAGCACGTTTGTGGGAGGGTAGCAGGAGATAC
AGGCGGTCGGATCTTCTCCTGTTGCTGAGGGCAGGGTATGAGGTCTGAGT
GTGAGCTGAAATAACTTGTTGATAATGTACCTGGACAAAAACATTTTCCC
GGAGATTTCGCAGCAACCAACGAAC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig92:173338..176462+

>mRNA_Ecto-sp6_S_contig92.18394.1 ID=mRNA_Ecto-sp6_S_contig92.18394.1|Name=mRNA_Ecto-sp6_S_contig92.18394.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=609bp|location=Sequence derived from alignment at Ecto-sp6_S_contig92:173338..176462+ (Ectocarpus species6 EcLAC_371)
ATGGCAACGAGCCCACGACACGAGGACGAACATGAAGCCGAGGCCGTGTT
GCTCCGTCGGTTGGATGCCTTAGAGCGACTTGTCTTTGGCCGATCATGTT
CGGCCGCTTCTTCGGGTACCGCTAGCCTGGGTCGAGAAGTGGAGCCTCTA
GCAGCCAAGGTCAAGGCCATCTCTAGGAGCGTAGCGCGAGCCGAAGGAGG
TGATCGGAATCTCCAGGACATCGCAGCACAAGCTGCACGCCTGGGGCTAC
TTTCGCCGCTGCCATCTACGACAACTGCAGCGTCCACCCACAACGTGGCG
CTCAAGGAAAACATCTTGTACGCGGCGAGAGAGGAGATCGAGACCACCGC
GCGCTTGCTGTCACAAGTCAAGACTTTGCAGGAACACGTCAACCCTCCGT
ACCTTAAAGATATGCCGCAGTTGACTGCACACCTGAGCCGGTTGGAAGGC
ACCTATGTCCAGCAGGCAACGGAGGTAGCCCGAATAAACGAGCGCGCCGA
GAACGCTCTGCTCCACTACAGTGAGGCGGTGAATCTTGTGTCGGAGAAGT
TCGTGCACTGGGACGATCAAGTCGCGGAACTGGAGCGGCAACACGCGTCT
CGATCGTAG
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