prot_Ecto-sp6_S_contig92.18394.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp6_S_contig92.18394.1
Unique Nameprot_Ecto-sp6_S_contig92.18394.1
Typepolypeptide
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length203
Homology
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BLAST of mRNA_Ecto-sp6_S_contig92.18394.1 vs. uniprot
Match: A0A162XCC7_PHYB8 (Uncharacterized protein n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A162XCC7_PHYB8)

HSP 1 Score: 53.5 bits (127), Expect = 2.270e-5
Identity = 50/189 (26.46%), Postives = 89/189 (47.09%), Query Frame = 0 
Query:    9 DEHEAEAVLLRRLDALERLVFGRSCSAASSGTASLGREVEPLAAKVKAISRSVARAEGGDRNLQD-IAAQAARLGLLSPLPSTTTAASTHNVA-LKENILYAAREEIETTARLLSQVKTLQEHVNPPYLKDMPQLTAHLSRLEGTYVQQATEVARINERAENALLHYSEAVNLVSEKFVHWDDQVAELE 195
            DEH  EA    RL  +E ++ G+     +  T        PL  ++ A+ + +     G++ +QD I        LL+P  ST            K  ++ AA E++ET A+ + QVK+L+  V+    + +  L   L+ LE  +  QA E+  +  +  + + +Y+  +N +SE F+ WDD +  +E
Sbjct:    2 DEHGFEA----RLRHVEHILVGQQALYLARATKL------PLLQRMDALRKELQTVYKGNKGIQDFIDKYDVHAKLLNPANSTFLMEREFLAPEAKLELVMAALEDMETFAKQVKQVKSLEHVVSGVDFEAVQTLGPQLTPLEAIHSDQARELNELTHKVSSLMDNYNGLINTLSEIFISWDDILGTME 180
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig92.18394.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A162XCC7_PHYB82.270e-526.46Uncharacterized protein n=1 Tax=Phycomyces blakesl... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009991Dynactin subunit 3PFAMPF07426Dynactin_p22coord: 17..188
e-value: 3.5E-22
score: 79.0
IPR009991Dynactin subunit 3PANTHERPTHR28360FAMILY NOT NAMEDcoord: 15..200

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig92contigEcto-sp6_S_contig92:173381..176158 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig92.18394.1mRNA_Ecto-sp6_S_contig92.18394.1Ectocarpus species6 EcLAC_371mRNAEcto-sp6_S_contig92 173338..176462 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp6_S_contig92.18394.1 ID=prot_Ecto-sp6_S_contig92.18394.1|Name=mRNA_Ecto-sp6_S_contig92.18394.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=203bp
MATSPRHEDEHEAEAVLLRRLDALERLVFGRSCSAASSGTASLGREVEPL
AAKVKAISRSVARAEGGDRNLQDIAAQAARLGLLSPLPSTTTAASTHNVA
LKENILYAAREEIETTARLLSQVKTLQEHVNPPYLKDMPQLTAHLSRLEG
TYVQQATEVARINERAENALLHYSEAVNLVSEKFVHWDDQVAELERQHAS
RS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009991DCTN3