mRNA_Ecto-sp6_S_contig9.18304.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18304.1
Unique NamemRNA_Ecto-sp6_S_contig9.18304.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig9.18304.1 vs. uniprot
Match: A0A6H5KZH8_9PHAE (GT8 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZH8_9PHAE)

HSP 1 Score: 472 bits (1215), Expect = 2.930e-157
Identity = 228/237 (96.20%), Postives = 232/237 (97.89%), Query Frame = 1
Query:  100 MVTSDDFVIGAEVMLHSLREHCGGSTRRPALVVMVTSGVSQLKRQALKAVSDEVIEVGPIAMPIERAAGHVPAWADVGYTKLRVWGLIQFRRVVYIDADALVMEDLDELFDREVDFAAAPDVFPPDKFNAGVMVVVPSLIVLADMMSKVEELPSYDGGDTGFLNAYFADWFSRPAAARLPFAYNALRTVYWTTHEKNPGYWEAIGPVKIIHFCSSPKPWEETNRKGDLEMTWWQRYV 810
            MVTSDDFVIGAEV+LHSLREHCGGSTRRPALVVMVTSGVSQLKRQALK VSDEVIEV PIA+PI+RAAGHVPAWADVGYTKLRVWGLIQFRRVVYIDADALVM D+DELFDREVDFAAAPDVFPPDKFNAGVMVVVPSLIVL DMMSKVEELPSYDGGDTGFLNAYFADWFSRPAAARLPFAYNALRTVYWTTHEKNPGYWEAIGPVKIIHFCSSPKPWEETNRKGDLEMTWWQR V
Sbjct:    1 MVTSDDFVIGAEVLLHSLREHCGGSTRRPALVVMVTSGVSQLKRQALKVVSDEVIEVEPIAVPIKRAAGHVPAWADVGYTKLRVWGLIQFRRVVYIDADALVMVDIDELFDREVDFAAAPDVFPPDKFNAGVMVVVPSLIVLEDMMSKVEELPSYDGGDTGFLNAYFADWFSRPAAARLPFAYNALRTVYWTTHEKNPGYWEAIGPVKIIHFCSSPKPWEETNRKGDLEMTWWQRCV 237          
BLAST of mRNA_Ecto-sp6_S_contig9.18304.1 vs. uniprot
Match: A0A835YMF4_9STRA (Glycosyltransferase, family GT8 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMF4_9STRA)

HSP 1 Score: 303 bits (775), Expect = 4.140e-92
Identity = 145/249 (58.23%), Postives = 186/249 (74.70%), Query Frame = 1
Query:   73 DEQRVAFVTMVTSDDFVIGAEVMLHSLREHCGGSTRRPALVVMVTSGVSQLKRQALKAVSDEVIEVGPIAMP-IERAAGHVPAWADVGYTKLRVWGLIQFRRVVYIDADALVMEDLDELFDREVDFAAAPDVFPPDKFNAGVMVVVPSLIVLADMMSKVEELPSYDGGDTGFLNAYFADWFSRPAAARLPFAYNALRTVYWTTHEKNPGYW-EAIGPVKIIHFCSSPKPWEETNRKGDLEMTWWQRYVT 813
            D +R A+ T+VT+D++ IGAEV+L SL+E    +      VV++T  VS   R  L+ V  EV+EV P++M     A+ HV  WA+VGYTKLR+WGL+Q+ ++ YIDAD LV+  ++++F R+VDFAAAPDVFPPDKFNAGV++V P+  +  DMM K+ ELPSYDGGDTGFLNAYF +WF+  A ARLPF YNA RT+YW THEK P YW EA+ P+KIIHFCSSPKPWE   +KGDLEM WW ++VT
Sbjct:    4 DSERYAYATLVTTDEYAIGAEVLLQSLKEFSSNAAIHR--VVLITPNVSTSARARLQRVGCEVLEVMPLSMASCPSASDHVSGWAEVGYTKLRIWGLVQYTKIFYIDADCLVVGAVEDVFKRDVDFAAAPDVFPPDKFNAGVLLVKPNEAIFQDMMRKIPELPSYDGGDTGFLNAYFPNWFTYAAEARLPFGYNAQRTMYWMTHEKAPAYWNEAVKPLKIIHFCSSPKPWEG-KKKGDLEMLWWAKFVT 249          
BLAST of mRNA_Ecto-sp6_S_contig9.18304.1 vs. uniprot
Match: A0A7S2Y0F1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0F1_9STRA)

HSP 1 Score: 290 bits (742), Expect = 1.490e-87
Identity = 138/242 (57.02%), Postives = 175/242 (72.31%), Query Frame = 1
Query:   85 VAFVTMVTSDDFVIGAEVMLHSLREHCGGSTRRPALVVMVTSGVSQLKRQALKAVSDEVIEVGPIAMPIERAAGHVPAWADVGYTKLRVWGLIQFRRVVYIDADALVMEDLDELFDREVDFAAAPDVFPPDKFNAGVMVVVPSLIVLADMMSKVEELPSYDGGDTGFLNAYFADWFSRPAAARLPFAYNALRTVYWTTHEKNPGYWEAIGPVKIIHFCSSPKPWEETNRKGDLEMTWWQRYV 810
            +AFVT++T+D F +G EV+L SL +          +V++VT  VSQ  R  L   +  + ++ PI  P   A  HV  W D GY KLR+WGL+++ RVVY+DAD LVME + ELF+RE DFAAAPDVFPPDKFNAGV+V+ P   V  DM+SK+  LPSYDGGDTGFLNAYF DWFS PAA+RLPFA+NA RT++W T  +NPGYW+A GP KIIH+ S+PKPW+   +KG+LEM WWQ Y+
Sbjct:    1 MAFVTILTNDSFKMGVEVLLFSLEQT--SMQDNVDVVILVTPQVSQFTRNQLVRSNRRIKQIEPIENP--NAEAHVQGWVDSGYAKLRLWGLLEYSRVVYLDADCLVMEPIHELFEREADFAAAPDVFPPDKFNAGVLVLKPDQAVYEDMLSKLNALPSYDGGDTGFLNAYFPDWFSCPAASRLPFAFNAQRTLHWLTAARNPGYWQAAGPHKIIHYSSNPKPWDSGAKKGELEMIWWQYYL 238          
BLAST of mRNA_Ecto-sp6_S_contig9.18304.1 vs. uniprot
Match: A0A7S3NMD1_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NMD1_9STRA)

HSP 1 Score: 281 bits (718), Expect = 3.970e-83
Identity = 133/240 (55.42%), Postives = 175/240 (72.92%), Query Frame = 1
Query:   82 RVAFVTMVTSDDFVIGAEVMLHSLREHCGGSTRRPALVVMVTSGVSQLKRQALKAVSDEVIEVGPIAMPIERAAGHVPAWADVGYTKLRVWGLIQFRRVVYIDADALVMEDLDELFDREVDFAAAPDVFPPDKFNAGVMVVVPSLIVLADMMSKVEELPSYDGGDTGFLNAYFADWFSRPAAARLPFAYNALRTVYWTTHEKNPGYWEAIGPVKIIHFCSSPKPWEETNRKGDLEMTWWQ 801
            R A+ T++TS+DFV G EV+LHSL++   G+ R   L+V+VTS + +  RQ L  ++  + EV PIA P ER      +W   GYTKLR+W L+++R +VYIDADA+V+ ++DELF  E  FAAAPD+FPPDKFNAGV+V+ P L V   MM  V    ++DGGDTGFLN+YF DWFS PA ARLPF YNA RT++W TH+K PGYW +I P+KI+HF SSPKPW++T  KG++E+ WWQ
Sbjct:   14 REAYATLITSEDFVDGGEVLLHSLKKT--GTDRD--LIVVVTSDICKTSRQRLSRIAQRICEVEPIANPFERQDA---SWKGSGYTKLRLWTLVEYRCIVYIDADAVVLSNIDELFFLETHFAAAPDLFPPDKFNAGVLVLRPDLDVFQQMMETVPLAKTHDGGDTGFLNSYFHDWFSYPANARLPFRYNAQRTLFWMTHQKTPGYWNSIKPIKILHFVSSPKPWQDTKSKGEIELIWWQ 246          
BLAST of mRNA_Ecto-sp6_S_contig9.18304.1 vs. uniprot
Match: W7TND6_9STRA (Unidentified vitellogenin-linked transcript family member (Uvt-5) n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TND6_9STRA)

HSP 1 Score: 266 bits (679), Expect = 1.160e-77
Identity = 138/276 (50.00%), Postives = 178/276 (64.49%), Query Frame = 1
Query:   88 AFVTMVTSDDFVIGAEVMLHSLREHCGGSTR----RPALVVMVTSGVSQLKRQALKAVSDEVIEVGPIAMPIERAAGHVPAWADVGYTKLRVWGLIQFRRVVYIDADALVMEDLDELFDREVDFAAAPDVFPPDKFNAGVMVVVPSLIVLADMMSKVEE--LPSYDGGDTGFLNAYFADWFSRP-----------------------AAARLPFAYNALRTVYWTTHEKNPGYWEAIGP-VKIIHFCSSPKPWEE--TNRKGDLEMTWWQRYVTWH 819
            AFVT++T+D F  GA+V+LHSLR       +    RP +VV+VT  +S+  R+ L+   DE++ V PIA P    + HV  W D G+TKL++WGL QF RVVY+DAD LV+ED+ ELF  +VDFAAAPD+FPPD+FNAGVM+V P+L V  DM+  V+   LPSYDGGDTGFLNA+F  W+S P                       + ARLPF +NA RT++W TH   PGYW A+   VKI+HF SSPKPWE     +KG+LE+ WW  +V  H
Sbjct:   25 AFVTLLTTDSFGPGAQVLLHSLRTSISAKDKDVAIRPVVVVLVTPEISERTRKGLEGFCDELLTVEPIANPYAENS-HVSGWVDSGFTKLQIWGLTQFERVVYLDADCLVVEDIQELFSADVDFAAAPDIFPPDRFNAGVMLVRPNLDVYEDMLRAVKAGALPSYDGGDTGFLNAFFPKWYSSPLVRTGSTSSSFSTCGGNTMPQKVSMARLPFIWNAQRTLHWMTHAVAPGYWGAVATRVKILHFSSSPKPWEPEGVRKKGELEVKWWTTFVEMH 299          
BLAST of mRNA_Ecto-sp6_S_contig9.18304.1 vs. uniprot
Match: A0A2D4CD68_PYTIN (Glycosyltransferase putative n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CD68_PYTIN)

HSP 1 Score: 260 bits (664), Expect = 3.530e-76
Identity = 131/250 (52.40%), Postives = 172/250 (68.80%), Query Frame = 1
Query:   88 AFVTMVTSDDFVIGAEVMLHSLREHCGGSTRRPALVVMVTSGVS-----QLKRQALKAVSDEVIE---VGPIAMPIERAAG--HVPAWADVGYTKLRVWGLIQFRRVVYIDADALVMEDLDELFDREVDFAAAPDVFPPDKFNAGVMVVVPSLIVLADMMSKVEELPSYDGGDTGFLNAYFADWFSRPAAARLPFAYNALRTVYWTTHEKNPGYWEAIGPVKIIHFCSSPKPWEETNRKGDLEMTWWQRY 807
            A+VT++TSD F IG E + +SL      +  R  LVV+ T  VS     +L+R      S   I    V  I +P    AG  HV  W + GY+KL V+ L +F ++VYIDAD LV+E++D+LF+RE DFAAAPDVFPPD+FNAGV+VV PS +   ++ +++  L SYDGGDTGFLNA+F DWF   AA+RLPF YNA RT+YW  ++KNPGYW+A+ P+KI+HF S+PKPW++  RKGDLEM WWQ Y
Sbjct:    4 AYVTLLTSDAFSIGVEALAYSLFR----TRPRYPLVVLHTPQVSAACCAKLERFFAALQSQLPISLRRVPDIGIPELTPAGSVHVAGWVNSGYSKLHVFALEEFEKIVYIDADCLVLENVDDLFERETDFAAAPDVFPPDRFNAGVLVVTPSAVRFEELHARINTLKSYDGGDTGFLNAFFRDWFCSDAASRLPFRYNAQRTMYWLVNDKNPGYWDAVQPIKILHFSSNPKPWDDPRRKGDLEMLWWQLY 249          
BLAST of mRNA_Ecto-sp6_S_contig9.18304.1 vs. uniprot
Match: A0A485KJZ5_9STRA (Aste57867_8336 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KJZ5_9STRA)

HSP 1 Score: 259 bits (661), Expect = 7.240e-76
Identity = 122/250 (48.80%), Postives = 172/250 (68.80%), Query Frame = 1
Query:   91 FVTMVTSDDFVIGAEVMLHSLREHCGGSTRRPALVV----MVTSGVSQLKRQALKAVSDEVIEVGPIAMPIERAAGHVPAWADVGYTKLRVWGLIQFRRVVYIDADALVMEDLDELFDREV---DFAAAPDVFPPDKFNAGVMVVVPSLIVLADMMSKVEELPSYDGGDTGFLNAYFADWFSRPAAARLPFAYNALRTVYWTTHEKNPGYWEAIGPVKIIHFCSSPKPWEETNRKGDLEMTWWQRYVTWH 819
            + T+VTSD+FVIG EV+ +SLR++     + P LV+    +   GV +L+R      +   ++    A+P      HVP W + GYTKL V+ L++F +V YID+DA V+ ++D++F+R++    FAAAPD+FPPD+FNAGV++V PS  +  D+M ++  LPSYDGGDTG+LNA+F DWF+  + ARLPFAYNA RT++W TH+  PGYW+A+G VKI+H  SSPKPWE   +KG+LEM WW  Y   H
Sbjct:    7 YATLVTSDEFVIGVEVLAYSLRKY---GAKFPLLVLYTDQLSAHGVQKLQRIDPATTTPRRVD----ALPNPNVEVHVPGWVNSGYTKLHVFNLVEFAKVFYIDSDAFVLANVDDMFERDIAPYPFAAAPDIFPPDRFNAGVLLVQPSAALFRDLMDQIALLPSYDGGDTGYLNAFFPDWFTSDSRARLPFAYNAQRTMHWLTHDTKPGYWDAVGRVKILHCSSSPKPWENPAKKGELEMLWWHYYTEMH 249          
BLAST of mRNA_Ecto-sp6_S_contig9.18304.1 vs. uniprot
Match: A0A7S4N210_GUITH (Hypothetical protein n=4 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4N210_GUITH)

HSP 1 Score: 259 bits (662), Expect = 8.540e-76
Identity = 126/237 (53.16%), Postives = 167/237 (70.46%), Query Frame = 1
Query:   88 AFVTMVTSDDFVIGAEVMLHSLREHCGGSTRRPALVVMVTSGVSQLKRQALKAVSDEVIEVGPIAMPIERAAGHVPAWADVGYTKLRVWGLIQFRRVVYIDADALVMEDLDELFDREVDFAAAPDVFPPDKFNAGVMVVVPSLIVLADMMSKVEELPSYDGGDTGFLNAYFADWFSRPAAARLPFAYNALRTVYWTTHEKNPGYWEAIGPVKIIHFCSSPKPWEETNRKGDLEMTWW 798
            A++TMVTSD +++GA V+ HS+ +    S +RP +  MVT  VS   R+AL+     +I V  I+    + +  + AW   GYTKL +W L +F ++VY+DAD LVME +D+LF RE  FAAAPD FPPD+FNAGV+VV PSL V  DM+S++  + SYDGGDTGFLN+YF DWF+   A+RLPF YNALRT+YW T +K PGYW A+G V+ +HFCS PKPW++   KG+LE  WW
Sbjct:   12 AYITMVTSDSYLMGALVLAHSILKTQDKSNQRP-ICCMVTDEVSADSRKALEQAGLRIIMVESIS---SKESSGIDAWDQSGYTKLNIWKLTEFSKLVYVDADCLVMESIDDLFSRETRFAAAPDTFPPDRFNAGVLVVEPSLEVFEDMISRIGVMHSYDGGDTGFLNSYFHDWFTMGEASRLPFRYNALRTMYWLT-QKKPGYWNAVGAVRCLHFCSFPKPWDQAP-KGELEQKWW 242          
BLAST of mRNA_Ecto-sp6_S_contig9.18304.1 vs. uniprot
Match: K3WC47_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WC47_GLOUD)

HSP 1 Score: 259 bits (661), Expect = 1.180e-75
Identity = 124/259 (47.88%), Postives = 175/259 (67.57%), Query Frame = 1
Query:   67 TPDEQRVAFVTMVTSDDFVIGAEVMLHSLREHCGGSTRRPALVVMVTSGVSQ------------LKRQALKAVSDEVIEVGPIAMPIERAAGHVPAWADVGYTKLRVWGLIQFRRVVYIDADALVMEDLDELFDREVDFAAAPDVFPPDKFNAGVMVVVPSLIVLADMMSKVEELPSYDGGDTGFLNAYFADWFSRPAAARLPFAYNALRTVYWTTHEKNPGYWEAIGPVKIIHFCSSPKPWEETNRKGDLEMTWWQRY 807
            T   +R A+ T++TSD +V+G E +++SL +        P LVV+ +S V+Q             +    +     V ++G      +R+  HVP W + GYTKL ++ +  F ++VYIDADA+V++++DELFDR   FAAAPDVFPPD+FNAGV+V+ P+  + AD+++K +EL SYDGGDTGFLNA+F  WF   AA+RLPF YNA RT+YW  + KNPGYW A+ P+KI+H+ S+PKPWE+ +RKGDLE+ WWQ Y
Sbjct:    2 TVGTRRAAYATLITSDAYVMGVEALVYSLFK---ARVAFP-LVVLHSSQVTQPTVAKLTRFCAPFQSSTWRISFRSVPDIGIPDEVTDRSTVHVPGWVNSGYTKLHIFAMDDFEQIVYIDADAIVLQNVDELFDRSTSFAAAPDVFPPDRFNAGVLVIRPNKQLFADLLAKAKELKSYDGGDTGFLNAFFPKWFESDAASRLPFGYNAQRTMYWLVNGKNPGYWNAVQPLKILHYSSNPKPWEDPSRKGDLEILWWQMY 256          
BLAST of mRNA_Ecto-sp6_S_contig9.18304.1 vs. uniprot
Match: F0WEL0_9STRA (Glycosyltransferase putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WEL0_9STRA)

HSP 1 Score: 253 bits (645), Expect = 1.630e-73
Identity = 122/251 (48.61%), Postives = 172/251 (68.53%), Query Frame = 1
Query:   88 AFVTMVTSDDFVIGAEVMLHSLREHCGGSTRRPALVVMVTSGVSQLKRQALKA------VSDEV--IEVGPIAMPIERA---AGHVPAWADVGYTKLRVWGLIQFRRVVYIDADALVMEDLDELFDREVDFAAAPDVFPPDKFNAGVMVVVPSLIVLADMMSKVEELPSYDGGDTGFLNAYFADWFSRPAAARLPFAYNALRTVYWTTHEKNPGYWEAIGPVKIIHFCSSPKPWEETNRKGDLEMTWWQRY 807
            A+ TM+TSDDF +G E +L+S    C  S+     +++ TS VS+     L        +S+ +  + V  I +P   +   + HV +W +  YTKL ++GL +++++VYIDADAL++ ++DELF+ +  FAAAPD+FPPD+FNAGV+V+ P   V  ++++K + + SYDGGDTGFLN  F+DWF R AA+RLPF YNA RT+YW  + KNPGYW+A+ P+KI+HF SSPKPWEE NR GDLEM WW  Y
Sbjct:    3 AYATMITSDDFQMGVEALLYSWS--CTHSSIN--FLILYTSQVSKRVLDKLHRFLETLRMSERIKWMRVDSIPIPASSSDPPSSHVESWLNSAYTKLNIFGLEEYQKIVYIDADALILTNIDELFEMDTSFAAAPDIFPPDRFNAGVLVIKPGKDVFENLLAKAKTIKSYDGGDTGFLNLVFSDWFQRDAASRLPFRYNAQRTMYWMVNSKNPGYWKAVEPLKILHFSSSPKPWEEPNRIGDLEMIWWMYY 249          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18304.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZH8_9PHAE2.930e-15796.20GT8 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A835YMF4_9STRA4.140e-9258.23Glycosyltransferase, family GT8 n=1 Tax=Tribonema ... [more]
A0A7S2Y0F1_9STRA1.490e-8757.02Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3NMD1_9STRA3.970e-8355.42Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
W7TND6_9STRA1.160e-7750.00Unidentified vitellogenin-linked transcript family... [more]
A0A2D4CD68_PYTIN3.530e-7652.40Glycosyltransferase putative n=2 Tax=Pythium insid... [more]
A0A485KJZ5_9STRA7.240e-7648.80Aste57867_8336 protein n=1 Tax=Aphanomyces stellat... [more]
A0A7S4N210_GUITH8.540e-7653.16Hypothetical protein n=4 Tax=Guillardia theta TaxI... [more]
K3WC47_GLOUD1.180e-7547.88Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
F0WEL0_9STRA1.630e-7348.61Glycosyltransferase putative n=1 Tax=Albugo laibac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:2827633..2832583 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score479.2
Seed ortholog evalue1.5e-132
Seed eggNOG ortholog2880.D7FV93
Model size3001
KEGG rclassRC00005,RC00171
KEGG koko:K00750
KEGG ReactionR00292,R03681
KEGG Pathwayko00500,ko01100,map00500,map01100
Hectar predicted targeting categoryother localisation
Exons8
EggNOG free text desc.Glycosyl transferase family 8
EggNOG OGsCOG5597@1,KOG1950@2759
Ec32 ortholog descriptionGlycosyltransferase, family GT8
Ec32 orthologEc-14_000240.1
EC2.4.1.186
Cds size963
COG Functional cat.M
CAZyGT8
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18304.1prot_Ecto-sp6_S_contig9.18304.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 2829690..2832583 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350549.1441207-UTR-Ecto-sp6_S_contig9:2827632..28291761682350549.1441207-UTR-Ecto-sp6_S_contig9:2827632..2829176Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 2827633..2829176 -
1682350549.156822-UTR-Ecto-sp6_S_contig9:2829195..28296891682350549.156822-UTR-Ecto-sp6_S_contig9:2829195..2829689Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 2829196..2829689 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350549.169346-CDS-Ecto-sp6_S_contig9:2829689..28298431682350549.169346-CDS-Ecto-sp6_S_contig9:2829689..2829843Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2829690..2829843 -
1682350549.1806495-CDS-Ecto-sp6_S_contig9:2829863..28299491682350549.1806495-CDS-Ecto-sp6_S_contig9:2829863..2829949Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2829864..2829949 -
1682350549.1886404-CDS-Ecto-sp6_S_contig9:2830422..28305651682350549.1886404-CDS-Ecto-sp6_S_contig9:2830422..2830565Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2830423..2830565 -
1682350549.196248-CDS-Ecto-sp6_S_contig9:2830889..28310461682350549.196248-CDS-Ecto-sp6_S_contig9:2830889..2831046Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2830890..2831046 -
1682350549.2039487-CDS-Ecto-sp6_S_contig9:2831214..28313061682350549.2039487-CDS-Ecto-sp6_S_contig9:2831214..2831306Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2831215..2831306 -
1682350549.2117212-CDS-Ecto-sp6_S_contig9:2831589..28316531682350549.2117212-CDS-Ecto-sp6_S_contig9:2831589..2831653Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2831590..2831653 -
1682350549.2196531-CDS-Ecto-sp6_S_contig9:2832316..28325831682350549.2196531-CDS-Ecto-sp6_S_contig9:2832316..2832583Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2832317..2832583 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18304.1

>prot_Ecto-sp6_S_contig9.18304.1 ID=prot_Ecto-sp6_S_contig9.18304.1|Name=mRNA_Ecto-sp6_S_contig9.18304.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=321bp
MAEATTGNERGKTPRGIGAGKETPDEQRVAFVTMVTSDDFVIGAEVMLHS
LREHCGGSTRRPALVVMVTSGVSQLKRQALKAVSDEVIEVGPIAMPIERA
AGHVPAWADVGYTKLRVWGLIQFRRVVYIDADALVMEDLDELFDREVDFA
AAPDVFPPDKFNAGVMVVVPSLIVLADMMSKVEELPSYDGGDTGFLNAYF
ADWFSRPAAARLPFAYNALRTVYWTTHEKNPGYWEAIGPVKIIHFCSSPK
PWEETNRKGDLEMTWWQRYVTWHGRICLMARVLVKVRKDGTNSVVSFTAV
AVWRCCCQTDMHESGGTRDV*
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mRNA from alignment at Ecto-sp6_S_contig9:2827633..2832583-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18304.1 ID=mRNA_Ecto-sp6_S_contig9.18304.1|Name=mRNA_Ecto-sp6_S_contig9.18304.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4951bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:2827633..2832583- (Ectocarpus species6 EcLAC_371)
ATGGCGGAAGCAACAACAGGTAATGAGCGTGGCAAAACTCCCCGTGGTAT TGGGGCTGGCAAAGAAACCCCCGATGAACAAAGGGTTGCGTTCGTGACGA TGGTGACGAGCGACGATTTTGTCATTGGAGCTGAAGTAATGCTTCACTCC CTCCGCGAGCACTGCGGCGGCAGCACGCGACGACCAGCTTTGGTGGTGAT GGTCACCTCTGGAGTGTCACAGCTGAAGAGGCAAGCTCTGAAGGCTGTGT CGGATGAAGTCATAGAGGTGCGACTGCTGTAGCACTGTACTGTAAGAAGA GGACCCAGTACACAGGAGGAGGCGTCTTTCGCGAGACTGTCACTTCCGAC CTCGCCACGAGCTGCGTACATCAGCCTACACCCACACATGTACATATTTT ATTCCCGGAGAGTACGGAGCAGGAGCAGTACAGAGGAGAGTTGTGTATTC GTGTCATGGGAGTCTAGATTCTACACGGCATAGACTATGGATTATGGACT CTATACACATCGAAACTCGCGGCCGCCGGAGGCTCGCGCGCTGGCGGGTC TGAGAGTCTGAACGATGAATCCACCATCACGAACGATTGTAGGAAACCAA GCGGGAATTTGAAGTATCCTGGACACCTGGTTTCCATTCCTCAAACCACT GCCTCGATTGGCAGGAATCGCAGACCGAGGAAGTTGACCTCACAATCTCC GTAGATCACGTACTTTGTGGGATGTTTGATTTGGTGCCACACCTGGGTCA ACGCACGGTGCACGCGTGCGACGCAGGCAGGCTAACATGACCCATTCTGT TGAGGCGAGGCGCACGCCCACTCCGATAGAAATACCAAGTCCACTGACAA AACGAAAATAGCTACAAGCTGTCGCGCTGTGAATGTTCTCGCTTCAATAG CTCGCTGAATCGAGCGCATTGTCTCGTCAGGTGGGACCAATCGCAATGCC AATTGAACGGGCGGCGGGGCACGTGCCGGCATGGGCAGATGTAGGTGAGA CCTTGGCGTACATGTACATGAAGTTGATTCCCTCCATGGAAAGGAAAGAT GTTCATCACCGGCCGATTCATGCCCGTTTCTGCCGATCATCGCGACACAC AGAAAAGAGGAGGTGCCTACTTGAGCCACCACACGACATCCATGAACATA CATGCTTCACTTGATTCGCTTCAAACCAGCTCGATGAAAGCGTGATTCAA TCGTCTACGCACAACATTCGTGCGCGCTGTTCGTACCACCCTCACCGCCC GCTGCCACGTCATCACCGCCGCCGAAGGGTACACAAAGCTACGCGTGTGG GGTTTGATCCAGTTCAGACGCGTGGTGTACATAGATGCGGACGCTCTCGT GATGGAGGACCTTGACGAGGTAAATTCTGGTATATAAGCATGTCGGGTGC CTCCGGTAGACCGGTAGACCGACCTGGCGATACTGTACTCCTGGTGCGTG AGACTGCGGGTTCCCTCTACTGCTCTAGACTATACCCCACGGTCAATATT GTTTGCATTACGCCATCGTTCTTGATACCGGGAGCAGCTGTTCGATCGGG AGGTGGATTTCGCCGCGGCACCTGACGTGTTTCCACCAGACAAGTTCAAC GCCGGAGTAATGGTTGTGGTGCCGTCGCTGATTGTCCTGGCGGACATGAT GTCCAAGGTGGAAGAACTCCCATCGTACGACGGCGGAGACACCGGTGAGA GAGCGGGGCGGCGGCGGAAGAAGCAAGAGCTTGTGTACTACCCTTTCAGC GCTACTCTATAGGAAGGGGTGACTTCAAGGAGACGTACCGGCGTTGTGGG ATTTGAGCACTAGGATCTGAACAGTAATTCACATTTGGCGGCATCGGCAG GATGCACTGTGGAGTACGTTCAGTCGGAAAGCGGCGTTGCACGCTGCTGG AGCTCTGAGCTTGACCTAGGTCGCAACACATAGCCCTTGCCACATCATGT GCATACATGCGGCTGCTTACCCTGCGGACCAGCCTACATCAGCGTTGACG CCGCCGTCCCTGTCCCAGGTTTCTTAAACGCCTATTTCGCGGATTGGTTT TCAAGGCCGGCGGCTGCAAGGTTACCGTTCGCGTACAACGCCCTCCGCAC GGTCTATTGGACAACTCACGAGAAGAACCCTGGGTACTGGGAAGCGATCG GCCCCGTGAAGGTGCATACAGCTCTTTTTGGTTCCACCGCTATCCACGGA AGGCGTGCTTCGCCTCTGCCCCGGCCCCCCTCAAATCAATGGCAACATGA CAAAAACTTCGTGTCTGCCAGCTGAAGTCATCCGGAAAGGAAGAGAGTGT GGAAATGGCGGTTACATATGGCGCTTGGCCTTAATGTGTATGGATGCTCA CACCAACTTGTCGTTTCGCGTACTCCAGCACCCTCTCCTAGTTCGCAGTG GCCGAATGGGTTCCACGTTTGTCGAACTGTTGTGTTTCTGGTTTTAACGC CGGTTTCGTTACATATCGGTACCTCATCTGTAGGATTGAGCGCAAGTAGA GCTTTGACCTGGGTTTTCTCAAGGTGTCTGCTGTTTGCTGTTTGACATGC AACCTAATCGCTGTATTTTTGCCCTGTACCCCACTGGCGCATACCACTCT ATCCACCTGTCGCTATCGCCTTTTGTTTCTTCAGATTATTCACTTTTGCA GTAGCCCCAAGCCTTGGGAAGAAACCAATCGCAAGGGAGACCTGGAGATG ACGTGGTGGCAGCGATACGTGCAGATGAAAATGGGCTCAGTACCTGGCAT GGACGGATTTGTCTAATGGCGCGAGTGCTTGTGAAGGTTCGAAAGGATGG TACCAATAGCGTTGTTTCTTTTACGGCAGTTGCTGTTTGGCGTTGCTGTT GCCAAACGGATATGCACGAAAGTGGAGGTACGAGAGATGTCTAGTTTTGC GGAAGAAATATCAGTGACGGACCTGAAGCCCAGCGGCAACAACTTTTTAG CGTTAACCGTCCTAGAGGTACTTTGCGACTCAACCCGGTACTACGTTCGC CGGTCGTTCATGCCCCCCTTTCGACTTGTTCCAGCTCGGCGGAAAGTCGC ACCGACTGTTTCACGCAACGTTCTTGTTACATTGAGTACAGCTCGGCCAC TGTCACTGCTGTATGGTGAGGGCAAAACGGATGGATTTCTCTAGGGATTT CTTTTAACTCCTAGGTTCTTATGTGGTGGTGCTTCGTCGCCTAGGCCCAC TTGCCGCCCAAATGGTAAACACGACTGAGAATCCTCGGTGTAGAGATCTT CGGGATAGAAGGACACAAGTGCAGCAGAAAGAGACAGTGTACTTTTGTGA CGCAACAGCTATCTCCACCCACAGGCCATGAGGGCAGCCCGCGACAGGAT GGTGGGCACAGGCAGGGCTACAGAAGGATTGATGCGTGGTCGCGGTGCGA CCGGTAGGGCAGGTTGGGCCGTAGAGCTTGAAAATATCAGTCATCAAGCT GCCTAAACCACTCTATTTCAGTATGTTCAAACGATCAGTGAAAGCGATCG GTGAGAGCGCTTGTAGATCCATAGCTGGTTTTTTGTACCTCTGTACTTCG CCGTCCCCTCCCCAATGTGAACCCTGCCGGCTCAATACAGTTCCTGTGAT TTTCCAACCATTCCCACAAGTACGCAAGCACATCAGCACACACCTAACTT TGCATCATCAGTGGCTCTCTAGGTTCGGGCGAGGTATGTGTGGGGCTATG ATGATAGTGTATGTGCTACTATGCTATGTTGGGCTCGTCTATACTGCTGC GGCTGTGTAGGATAGCTGCTGACACGATGACTGCTGGATCTTGGGAGTGT ACGACTTTTAAATTGGAAAATATGCAGCTTACCACGATATCCTGGCTTGA AATGGCCATTTTTTGCTGGCCTCCGCTCTTTGCTTTTAGTGGCTCCCTAG ATTCGGGCGAGGGCATGTATTTGGAGCTATTGGTGTGTGTCTCTTGAAAG GATATGGGTAGAGATTCATTGGGGAATTGCATTTAGCGCATTGTGCGTTT TTCGATTTTTGGCCGTTCCAGGGACCTTGATTTTACCCGCTGGCACTGTA TGTCTTTTCATTGGTCACCGGTTAGCGCTGTCAAGCTAATAGTTAAGACA CACCTGGCGTGGAGGGATACAGGGCGGCAACTCCGTGGCATGCCACCACA CCAACATTTGCAAATGATCAATCAATGATTTGTCAGGATACCTGTAGACC ACAAAGGTTTAAGTATTTACCTGTAGTAGTGTAGAATCCACGGCTGAGGT GTGCTTCTTGGCCGCTTTTTCTTCTTTATCGCCAAAATCAGTTGTTGCTT TTGAGATCTGTTTCTCAATCTCGGGCGCTATCTGCTGTACATCAGGAAAT CCGATCGACGGTAGAGATAAGAGGGAGGGAGGGAGTTTGAGAGGGAAGGT TTGGCACCGGTACATTGAAAAAAATCGGAACACATATTATTTGTTTCAAA GAGATGAATATAGTTGCATGTGTACCGTAACTGTGCAGACCAGGGCGCCG GCACGATGGTGTCGGGGATATGGCACCGGGGTGCGTAACAACGTATGAAC GGCGTGATATAATTCAATTTTGGCAACGGGCACGGTGTTGTCTCACCGGG TTGCGGCAAGACCGAAACGATAATAAACCCGCTTCGAGGACATGATATGT ACGGCAACGTGGCTGTGGTTTGTTCAGGACCACACCCGTTGGAGTTTTCG CACCGAGGTGCGTTGGGAAAAGATAGGTGGTGAGGCACAGGGCTAATTGA TTTGATTGCACTCCCGCCGGGTGCGACGACGGTGGTTTCGCACCCCTACA GTGCCAAAGGTTGTCCCACATCTTTGGGGCGGGGTAAAAAAAGGGTTGCC CAACGAACTGGGCGACAACTATGCGTTGGAAAGCCCTCGCCAGCGTCGTT CGAATAAGCTTTTCAAGATGGGTCGCAACGCTCTGGATCAAAAGTTATGA A
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:2827633..2832583-

>mRNA_Ecto-sp6_S_contig9.18304.1 ID=mRNA_Ecto-sp6_S_contig9.18304.1|Name=mRNA_Ecto-sp6_S_contig9.18304.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=963bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:2827633..2832583- (Ectocarpus species6 EcLAC_371)
ATGGCGGAAGCAACAACAGGTAATGAGCGTGGCAAAACTCCCCGTGGTAT
TGGGGCTGGCAAAGAAACCCCCGATGAACAAAGGGTTGCGTTCGTGACGA
TGGTGACGAGCGACGATTTTGTCATTGGAGCTGAAGTAATGCTTCACTCC
CTCCGCGAGCACTGCGGCGGCAGCACGCGACGACCAGCTTTGGTGGTGAT
GGTCACCTCTGGAGTGTCACAGCTGAAGAGGCAAGCTCTGAAGGCTGTGT
CGGATGAAGTCATAGAGGTGGGACCAATCGCAATGCCAATTGAACGGGCG
GCGGGGCACGTGCCGGCATGGGCAGATGTAGGGTACACAAAGCTACGCGT
GTGGGGTTTGATCCAGTTCAGACGCGTGGTGTACATAGATGCGGACGCTC
TCGTGATGGAGGACCTTGACGAGCTGTTCGATCGGGAGGTGGATTTCGCC
GCGGCACCTGACGTGTTTCCACCAGACAAGTTCAACGCCGGAGTAATGGT
TGTGGTGCCGTCGCTGATTGTCCTGGCGGACATGATGTCCAAGGTGGAAG
AACTCCCATCGTACGACGGCGGAGACACCGGTTTCTTAAACGCCTATTTC
GCGGATTGGTTTTCAAGGCCGGCGGCTGCAAGGTTACCGTTCGCGTACAA
CGCCCTCCGCACGGTCTATTGGACAACTCACGAGAAGAACCCTGGGTACT
GGGAAGCGATCGGCCCCGTGAAGATTATTCACTTTTGCAGTAGCCCCAAG
CCTTGGGAAGAAACCAATCGCAAGGGAGACCTGGAGATGACGTGGTGGCA
GCGATACGTTACCTGGCATGGACGGATTTGTCTAATGGCGCGAGTGCTTG
TGAAGGTTCGAAAGGATGGTACCAATAGCGTTGTTTCTTTTACGGCAGTT
GCTGTTTGGCGTTGCTGTTGCCAAACGGATATGCACGAAAGTGGAGGTAC
GAGAGATGTCTAG
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