mRNA_Ecto-sp6_S_contig9.18295.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18295.1
Unique NamemRNA_Ecto-sp6_S_contig9.18295.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig9.18295.1 vs. uniprot
Match: D7FVA2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVA2_ECTSI)

HSP 1 Score: 224 bits (572), Expect = 1.890e-74
Identity = 109/110 (99.09%), Postives = 110/110 (100.00%), Query Frame = 1 
Query:    1 EFQTPRVNGAVLSQFLGNTVCVVGKVLSYQEGDSEAQLETSDGAKITVQMTAGSTWTSQYVEVIGHLHEPDRLQEFKSTDFGDVFDLRKYDEAVSLMTGKFSYLFYNPQE 330
            EFQTPRVNGAVLSQFLGNTVCVVGKVLSYQEGDSEAQLETSDGAKITVQMTAGSTWTSQYVEVIGHLHEPDRLQEFKSTDFGD+FDLRKYDEAVSLMTGKFSYLFYNPQE
Sbjct:    3 EFQTPRVNGAVLSQFLGNTVCVVGKVLSYQEGDSEAQLETSDGAKITVQMTAGSTWTSQYVEVIGHLHEPDRLQEFKSTDFGDMFDLRKYDEAVSLMTGKFSYLFYNPQE 112
[Close]
BLAST of mRNA_Ecto-sp6_S_contig9.18295.1 vs. uniprot
Match: A0A024UW39_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024UW39_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 4.280e-24
Identity = 50/101 (49.50%), Postives = 70/101 (69.31%), Query Frame = 1 
Query:   13 PRVNGAVLSQFLGNTVCVVGKVLSYQEGDSEAQLETSDGAKITVQMTAGSTWTSQYVEVIGHLHEPDRLQEFKSTDFGDVFDLRKYDEAVSLMTGKFSYLF 315
            PRVN A+L+QF+G+TV +VG + S+    S+A L+TSD   +TV    G+ ++S+YVEVIG +     L+EFK T FGD FDL+ YD+ V L+ GK+S LF
Sbjct:    8 PRVNKAILAQFVGHTVSLVGSIESWT--GSQAVLKTSDNGFVTVHPQPGADYSSKYVEVIGSVQPDGSLKEFKCTSFGDDFDLKNYDKLVQLIHGKYSTLF 106
[Close]
BLAST of mRNA_Ecto-sp6_S_contig9.18295.1 vs. uniprot
Match: A0A485KWY3_9STRA (Aste57867_12966 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KWY3_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 2.520e-23
Identity = 49/101 (48.51%), Postives = 70/101 (69.31%), Query Frame = 1 
Query:   13 PRVNGAVLSQFLGNTVCVVGKVLSYQEGDSEAQLETSDGAKITVQMTAGSTWTSQYVEVIGHLHEPDRLQEFKSTDFGDVFDLRKYDEAVSLMTGKFSYLF 315
            PRVN AV++Q++G TV +VG + S+    S A ++TSDGA +TV    G+ +TS++VEVIG +     LQE+K T FGD FDL+ YD+ V L+ GKF+ +F
Sbjct:    8 PRVNKAVMAQYIGRTVALVGSLESWT--GSMAVIKTSDGALVTVHPQPGADYTSKFVEVIGLVKPDGSLQEYKCTSFGDDFDLKNYDKLVHLIHGKFATMF 106
[Close]
BLAST of mRNA_Ecto-sp6_S_contig9.18295.1 vs. uniprot
Match: A0A6G0XXL0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XXL0_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.990e-22
Identity = 48/101 (47.52%), Postives = 69/101 (68.32%), Query Frame = 1 
Query:   13 PRVNGAVLSQFLGNTVCVVGKVLSYQEGDSEAQLETSDGAKITVQMTAGSTWTSQYVEVIGHLHEPDRLQEFKSTDFGDVFDLRKYDEAVSLMTGKFSYLF 315
            PRVN A+++QF+G TV +VG + S+    S A ++TSDG  +TV    G+ ++S++VEVIG +     L+E+K T FGD FDL+ YD+ V L+ GKFS LF
Sbjct:    8 PRVNKAIMAQFVGRTVALVGSLESWT--GSMAVVKTSDGGLVTVHPQPGADYSSKFVEVIGLVQPDGSLKEYKCTSFGDDFDLKNYDKLVHLIHGKFSSLF 106
[Close]
BLAST of mRNA_Ecto-sp6_S_contig9.18295.1 vs. uniprot
Match: A0A8K1C3J4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C3J4_PYTOL)

HSP 1 Score: 86.3 bits (212), Expect = 1.190e-19
Identity = 45/101 (44.55%), Postives = 62/101 (61.39%), Query Frame = 1 
Query:   13 PRVNGAVLSQFLGNTVCVVGKVLSYQEGDSEAQLETSDGAKITVQMTAGSTWTSQYVEVIGHLHEPDRLQEFKSTDFGDVFDLRKYDEAVSLMTGKFSYLF 315
            PRVN   +  F+G TV +VG V S+    +   L TSDG  + V    GS ++S++VEVIG + + + LQEFK+T FGD FDL  YD+ V +   KF +LF
Sbjct:   12 PRVNKKTMGSFVGRTVAIVGAVESHMP--TAVVLRTSDGGMVNVNPMPGSDYSSKFVEVIGRVVDNNTLQEFKTTLFGDNFDLETYDQFVQVAQSKFRHLF 110
[Close]
BLAST of mRNA_Ecto-sp6_S_contig9.18295.1 vs. uniprot
Match: A0A484EA13_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EA13_BRELC)

HSP 1 Score: 82.0 bits (201), Expect = 5.340e-18
Identity = 45/102 (44.12%), Postives = 61/102 (59.80%), Query Frame = 1 
Query:   10 TPRVNGAVLSQFLGNTVCVVGKVLSYQEGDSEAQLETSDGAKITVQMTAGSTWTSQYVEVIGHLHEPDRLQEFKSTDFGDVFDLRKYDEAVSLMTGKFSYLF 315
            +PRVN   +  ++G+TV VVG V  +    +   L TSDG  + V    GS + S+ VEVIG + + + LQEFK+T FGD FDL  YD+ V L   K+ YLF
Sbjct:   10 SPRVNKTTMGGYVGHTVAVVGTVEKHSP--TAVVLRTSDGGIVNVTPQPGSDYGSKVVEVIGRVVDSETLQEFKTTLFGDNFDLDVYDQFVQLSHSKYKYLF 109
[Close]
BLAST of mRNA_Ecto-sp6_S_contig9.18295.1 vs. uniprot
Match: H3H303_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H303_PHYRM)

HSP 1 Score: 80.1 bits (196), Expect = 3.300e-17
Identity = 42/102 (41.18%), Postives = 63/102 (61.76%), Query Frame = 1 
Query:   10 TPRVNGAVLSQFLGNTVCVVGKVLSYQEGDSEAQLETSDGAKITVQMTAGSTWTSQYVEVIGHLHEPDRLQEFKSTDFGDVFDLRKYDEAVSLMTGKFSYLF 315
            +PRVN   +  ++G+TV +VG V S+    +  +L TSDG  + V    G+ + S+ VEVIG + + + +QEFK+T FGD FDL  YD+ V L   K+ +LF
Sbjct:   13 SPRVNKKTMGAYVGHTVALVGAVESHTP--TAVKLRTSDGGIVNVTPQPGTDYGSKVVEVIGRVTDSESIQEFKTTLFGDNFDLDVYDQFVQLAQSKYKHLF 112
[Close]
BLAST of mRNA_Ecto-sp6_S_contig9.18295.1 vs. uniprot
Match: A0A0P1B2V0_PLAHL (Metal-dependent amidohydrolase 3 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B2V0_PLAHL)

HSP 1 Score: 85.5 bits (210), Expect = 3.960e-17
Identity = 45/102 (44.12%), Postives = 65/102 (63.73%), Query Frame = 1 
Query:   10 TPRVNGAVLSQFLGNTVCVVGKVLSYQEGDSEAQLETSDGAKITVQMTAGSTWTSQYVEVIGHLHEPDRLQEFKSTDFGDVFDLRKYDEAVSLMTGKFSYLF 315
            +PRVN   +S+++G TV +VG V S++   +   L TSDG  + V    GS + S++VEVIG + + + +QEFK+T FGD FDL  YD  V L T K+ +LF
Sbjct:  548 SPRVNKKTMSEYIGTTVALVGAVESHRP--TAVVLRTSDGGIVNVTPQPGSDYGSRFVEVIGRVIDSETIQEFKTTLFGDNFDLDVYDNFVQLSTTKYKHLF 647
[Close]
BLAST of mRNA_Ecto-sp6_S_contig9.18295.1 vs. uniprot
Match: A0A225WD33_9STRA (Uncharacterized protein n=9 Tax=Peronosporaceae TaxID=4777 RepID=A0A225WD33_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.330e-16
Identity = 43/102 (42.16%), Postives = 61/102 (59.80%), Query Frame = 1 
Query:   10 TPRVNGAVLSQFLGNTVCVVGKVLSYQEGDSEAQLETSDGAKITVQMTAGSTWTSQYVEVIGHLHEPDRLQEFKSTDFGDVFDLRKYDEAVSLMTGKFSYLF 315
            +PRVN   +  ++G+TV +VG V S+    +   L TSDG  + V    GS + S+ VEVIG + + + +QEFK+T FGD FDL  YD+ V L   K+  LF
Sbjct:   13 SPRVNKKTMGAYVGHTVALVGAVESHSP--TAVVLRTSDGEIVNVTPQPGSDYGSKVVEVIGRVVDTETIQEFKTTLFGDNFDLDVYDQFVQLSQSKYKQLF 112
[Close]
BLAST of mRNA_Ecto-sp6_S_contig9.18295.1 vs. uniprot
Match: D0N6F0_PHYIT (Uncharacterized protein n=10 Tax=Phytophthora TaxID=4783 RepID=D0N6F0_PHYIT)

HSP 1 Score: 78.6 bits (192), Expect = 1.330e-16
Identity = 41/102 (40.20%), Postives = 63/102 (61.76%), Query Frame = 1 
Query:   10 TPRVNGAVLSQFLGNTVCVVGKVLSYQEGDSEAQLETSDGAKITVQMTAGSTWTSQYVEVIGHLHEPDRLQEFKSTDFGDVFDLRKYDEAVSLMTGKFSYLF 315
            +PRVN   +  ++G+TV +VG V S+    +   L TSDG  + V+   G+ + S+ VEVIG + + + ++EFK+T FGD FDL  YD+ V L   K+ +LF
Sbjct:   13 SPRVNKKTMGAYVGHTVALVGAVESHSP--TAVVLRTSDGEIVNVKTQPGTDYGSKVVEVIGRVEDSETIREFKTTLFGDNFDLDVYDQFVQLSQTKYKHLF 112
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18295.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVA2_ECTSI1.890e-7499.09Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A024UW39_9STRA4.280e-2449.50Uncharacterized protein n=3 Tax=Aphanomyces TaxID=... [more]
A0A485KWY3_9STRA2.520e-2348.51Aste57867_12966 protein n=1 Tax=Aphanomyces stella... [more]
A0A6G0XXL0_9STRA1.990e-2247.52Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A8K1C3J4_PYTOL1.190e-1944.55Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A484EA13_BRELC5.340e-1844.12Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
H3H303_PHYRM3.300e-1741.18Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A0P1B2V0_PLAHL3.960e-1744.12Metal-dependent amidohydrolase 3 n=1 Tax=Plasmopar... [more]
A0A225WD33_9STRA1.330e-1642.16Uncharacterized protein n=9 Tax=Peronosporaceae Ta... [more]
D0N6F0_PHYIT1.330e-1640.20Uncharacterized protein n=10 Tax=Phytophthora TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:2747571..2753179 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score225.3
Seed ortholog evalue1.4e-56
Seed eggNOG ortholog2880.D7FVA2
Model size333
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.Replication factor A protein 3
EggNOG OGs2C2US@1,2S5GF@2759
Ec32 ortholog descriptionReplication factor A protein 3
Ec32 orthologEc-14_000330.1
Cds size333
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350548.0611942-CDS-Ecto-sp6_S_contig9:2747570..27476931682350548.0611942-CDS-Ecto-sp6_S_contig9:2747570..2747693Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2747571..2747693 +
1682350548.074477-CDS-Ecto-sp6_S_contig9:2751723..27517731682350548.074477-CDS-Ecto-sp6_S_contig9:2751723..2751773Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2751724..2751773 +
1682350548.0852823-CDS-Ecto-sp6_S_contig9:2752624..27527071682350548.0852823-CDS-Ecto-sp6_S_contig9:2752624..2752707Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2752625..2752707 +
1682350548.0959628-CDS-Ecto-sp6_S_contig9:2753102..27531791682350548.0959628-CDS-Ecto-sp6_S_contig9:2753102..2753179Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2753103..2753179 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18295.1prot_Ecto-sp6_S_contig9.18295.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 2747571..2753179 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18295.1

>prot_Ecto-sp6_S_contig9.18295.1 ID=prot_Ecto-sp6_S_contig9.18295.1|Name=mRNA_Ecto-sp6_S_contig9.18295.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=111bp
EFQTPRVNGAVLSQFLGNTVCVVGKVLSYQEGDSEAQLETSDGAKITVQM
TAGSTWTSQYVEVIGHLHEPDRLQEFKSTDFGDVFDLRKYDEAVSLMTGK
FSYLFYNPQE*
back to top

mRNA from alignment at Ecto-sp6_S_contig9:2747571..2753179+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18295.1 ID=mRNA_Ecto-sp6_S_contig9.18295.1|Name=mRNA_Ecto-sp6_S_contig9.18295.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=5609bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:2747571..2753179+ (Ectocarpus species6 EcLAC_371)
GAGTTCCAGACACCTCGCGTCAATGGGGCAGTGCTGAGCCAGTTCTTGGG
CAACACGGTGTGCGTGGTGGGGAAGGTCTTGTCCTACCAAGAGGGAGATT
CAGAGGCACAACTCGAGACATCGGTGAGAACAAAAAACTAATGTACTGCT
GTATGCACTGCTGTAGATACCGTAAATTACTTGGGTACAGTATGTAGCTC
ACGCTGTTCGTGCTTTCCTCGTTCGAGCGGGCGTTTTGTTTTTTGTTCTT
TCGCCCCAAGCATGAATGGGCGCCAGTCCACTCCACTGCTGTAGGCGCGT
TCGGCAGTAGGTACTACAGATAGCGCCCGCACTTGCAAGAACTTAGTCTA
GCAGTTGAAACTCGAAAAATTCAGAAGCTAAGAACTCGAGCACCATTTTG
AACCCGGGTAAGAACGCCTACACTAATATACCTGTAGCACGGCCATTTGA
AGCCACAAGAGGAACTTAGAACCCCAGCGTCGACCGAAACTAGAAGACGA
GGGTTCTTAAGTACAGGCGCTATCTGTATTTGTTTGGCGCGCCGGCCTGG
GTCACACAGGGGGAATTCCCTGCGTTCATCTTGCGGTGCTTGCCTTCAGC
TCTCTGTTTTCAGCTGTCCCTTCCCAGTGTGTGGCGTGTCTCAGTGCGAA
TCTGAGGTTATTTCAGAGGTCAAGGGTCTGTCGAGACGCGATGGTCGTGG
ACAAGTCCCAAGCACTACGATGAAAAATTGCGTTGTCTCTCGCACGCTGA
AAACAGCTCTGTCTGGTATCACTGCTGCTGTCGACGACAGTCAGCAATTA
GACAACCAAGAGATGCGTACACGATCGAGACAAATAACTACCAGCATGTC
ACCGTAGTGTCACGAGTGTGCAGAGTGAGCACTGCAGGGGTTAGTCTGCG
GGACCCACTTGATGTGTCAGTCATCATAGAGTTGAGAGACAAAATATGGT
TGACTTCTTTTATTATTTTGGTTATTGCGGGCAGGAAACAGAGTGAGCCC
GGTAGGCGGGTGTGCGCTCTGTCTGCCATCATCTTACTCGTCCGTCGGTA
CCTACGACGTAGATGCAATAGAACTCAAAAGACTAGTCCGGAAGCGTTCC
GGCAACTCAAATACCATTCCTGGTACCTGTACTTTTATAGTACCATTCTC
CTACTGCTCCAGAAACATTGCGGGAACCGTGCTCACGTTCCTGGAATTTT
CCGGGAAATTTCCTTCGTACAAAAATAACCCGCATGCTTTGAAAAACGCG
CAAAGAACCGTTATGTGGTCTGAAACATGCATGGTAGACGGTTGTGAGCG
CGTCTTATGACAACCAGTCTTGACTACTACATACTTGTTGTGCAAGTACT
ATCATCAGTAAAATACCGATGTATACCGCATTTCTACTACTTGAGTATAG
TATAGAAACATTGCACTGCGAAATCGCAATAGAAATGCGAGTCAGGGCAG
TTGGTAGTTATTTACGGTGGCCTGAACACTCAAAATTCAACATTCCCTAC
TTCGATTGTGGGAGTGCAGTCAATCATCGAATGAACACATCCGAAATTCG
AATGCGTGCAGCGTAGTCCAACTACTGCCTGTAGTGTGTACTGAAATTTG
AAATTTGGTGCAGCGTAACCTTACTGCCGCGTACATGTGCAATTCGCAGA
ACAAATTCGCTTTTTGTTGAGGCATAGTAGAACCTCACGCTACTGTTCGC
AACAAAAATCAGTCGTGTTTCAACCAATTCCCGTTTGATCAGGGAATGAT
ATTTACAATTCGTCAGGGTCTTCAACGAAAAAATTCAAACAGTCAGCTTG
CTAGCTCGCTGCTGCTGCTGCTGTTGCTACGTGCCCGATGCGCATACAGC
AGTCTGCAGCAGTCTGAAAAATCGAAAACAAACAAACAACTCGTATGCAC
ACTCAAGTTAGGAGTCGATGAGGACTCCAAAGTAGCAGAGCTCCGGGGCC
AGTCCATGAACGAGAGTACGTTGGGAAGAGGGTCGTCACCAAAGTTCTGG
TGCTGCATCAAATCGTGCGTGGCGCAAGAATCGATTTGCTTCGACTCGGG
AACCAAAAACACGATATGACTAAAGCACCCCCAGTTCTGCTCTCTCATTA
GACTGTTACATCGTACGATCACAGACAAGCTCTCACCCTCGGAGGGCTTG
GTGGGCTCCCAGTCTGAATCTATTCCGATAATCTGGAGACCTATCAGATC
GAACTTGGTTCGGTTCCGCTGGCGGTTGGACCCCTTTCCTCGCCATTCGG
CAAAGAGATGTACTCCTCTAGCGTTCCATCTTTCAGCAGCCTCATCCCGC
AGAGCAGCGAGCACACTATCTACCCTAGGCCGCCCGTGTTGGACTACAAG
CCGCAACATTTTGTGGCGGCAGAAGGGGCCGAGGAGGTGGAGGAGGAGAC
GCAAGACACCGCCCCGGACGATTCAGAGAGGGCGAAAATGACGAACATGA
TCATCTCTTCGAGTGATGAGTCGCTGTCAGTCGCTGACAGCTGCTGTCAG
CGACTGACAGCGACTCATCACTCGAAGAGATGATCATGTTCGTCATGTCA
GCCCTCTCTGAATTGTCCAGGGCGGTGTTTTGCATCTCCTCCACCTCCTC
GTCCGCTTCTGCCGCCATAAAATGTTGCGGCTTGTAGTCCAACACGGGCG
GCCTAGGGTAGATAGTGTGCTCGCTGCTCTGCGGGATGAGGCCGCCGAAA
GGTGGAATGCTACACGAGTAGATCTCTTTGCCGAATGGCGAGGAAAGGGG
TCCAACCGCCAGCGGAACCGAACCAAGTACGATCTGATCGGTCTCCAGAT
TATTGGAATAGAACTTGTCAGAGGAGACGCTGCCGAGGTCCCTTTCAAGC
TCAGAGTCTGAGTAGAGGAAGTGGCTGAGAGTCCTCCTCGTGCGCTTGGC
TTCATCACACTTGAATTTCTCGAGTGTCGAGGAAATCCTTCGGGTGGCTC
CCTGAAGCGCGTTGACAATCTCAAGAAGGCAGATCTTCATGTTGTTGGTT
GTCTGGTCAGTACCCATGGTTGGTGGATGCCGTTGATCGTTCTGGAGGGT
TTTGAAATGAAGTTGCCATGTGAGGGCTATCATGAATCGCTCTCAGCTTC
ACCTGCTGTGCGTTCATGAATCGAAATGCGCATTGATCTCAACTTCACTC
GCTGTGAGTTCATGAATCGAATATGCGTATTTACGTGTACACTGCTGCGT
AAAATTCCGCATGAAAAAACTTGGTTCTGCGCAAGAACTTTTTTACACAA
AACGCTGTGTCGCATATGTTGCTCTCGTTTCCCGAGATGGGTTCAAGCCC
TTTCATTCTCTTTACCCTTGTTTGATTTGTCCCGTAGTGCTTTCGTTGAT
TCCTCACAGCGTGTGCCGTGGGCTTGAAGTATAATACAGTAGCTCGAGAA
GCCTGCTCAAAGAAGCCTGATAAATATGGCTTTCGGTAGATTTTTTGCGA
GACAGTCGGCATACATGGTGTCCGTAGGTGAGTACGTTAATTTCCCCATA
GCCCGTGAAGTCTTTGTTTCACTTGAAGATGGCCCCTGAAACGTCTGGTC
ATTGGGCCAGGGTTAGTGTCGGGGATAACGTTACCGATGGCAGTCCTGCC
GGTGTCGTTCTATGGGCGACGAGATGATAACCTTGCGTTCCCTTTGACCT
TGACCTACTAGTACTGGTATTGTCCAAGGCAAATAACAGTCTCAGTCGGT
GAGTGGACTCTGACCCATTCGGAAGCTCGTGTTTTCGAACCGTATCCTTT
GTTCTCCTTGACGAACGGACTCTCGTCTCTTGACCTCGCCCCGTACCTGA
CCTATGTACTCTTCTGCGTAGAGAACACACCCCAACAGATGCCGCATTTC
AAAGAAATTCCTCTCAATCAGTATCACATCAGTATATCTATCCCCGTTTT
TGTTGTGTATCTGATGGCGTCCGGAGCTCTCTATCGATATCTCCCCCGTA
CCTACAGGGTCGTCTAGACGCGTACGGACGTACCAGTTAGTGCACATGAA
CGTTCAATTTCATGTCGCGGTCTAGTGAGACACGATTCTGCTCTCCTTGC
ATACCCGCTGTCGTTGACTGTGCCGTGCTGACTGCTGGCCACCGGACGAC
ATGGGGGTGCTCTCCGATATTGGCATTGCTGACTTATTGCGATGGGCGCA
AAGGATGGGGCGAAGATTACCGTACAAATGACGGCAGGGAGTACATGGAC
CAGGTACGCTAGCATGAGCAACTCCGTGCCTACTCAACGCCCTCCCATTG
TCTTGTTCCTGGGGGATGTTGCCGCTCACATGACTACAACAGCTGCTTCT
CATTTATTGTTTTCAACGATACCTGCAGCCCCTTCTCTCGAAAATCCTGC
TGCTGTGTTTCGTCCGTTGTCCATTATCTGGCTTGATGTTTTGTTGTTGC
CCCCGATCGATGCTCTCTCTCTTGTTGGTTGTTTTTGACCGTTGAACCGT
TCGATGTCGTTTCATTTTCCATTGGTCGAGAACGCGGTGCAACTGCTGCT
TACTGGCACATAACATGACTACTGTACATGTCGCCACTTTGTGCTGGGTG
CACCTGTACGTGGTAACGCCCTTCATGCTAACATCGCAGGGTATGGTACA
ACAGAGAACGTGGATGACACCACTGGATGGTTTCTGACTCTCGAGAGCAC
AGCGGTAGGACACAGCACACAGAATTTCAGCAGTCAGTCACACAACAAGT
CGTTCTCCACGACATGCCTTTTCACCAGTCTTGCGCATGTAGTATCACGC
CGCTCGGTACGGAGGGAGTGGAGTTGGTTCTCTCTTTGACCGCCCTCTCT
TCGAGCTGCTCGCGCCTCTGTCAGTGTAATTGTATCAAGCATATCGTATC
ATGACGTACGCCGACTGCTGTCTGTTGCTGCACTCACGACCACAAACGCT
GGCAGAGTCTCGCGTTGATGGATAATAGATGGGTAACACGGCGTGTCCGT
CGTGTGGACCCATTGGATTGGTTCTTGCTTTCAAATACACTGAAAAACCT
TGCAACTATCACTGTCTCATCCCATGTGGCGGTGGCTTGCTCGCACATTC
GCAGTCAGTACGTGGAAGTGATCGGACACCTTCACGAGCCCGACAGGTTG
CAAGAGTTCAAGTCCACGGATTTCGGGGACGTGTTCGGTGAGAGACGGGA
GAGGCATGACCATGAGACATGGAACAGACGTCTTGTAGGCAGCCTGACAT
TTTTCATTTCCACATGGCTTTGCCGCGATACTTGTCTTGTTCAACCGTTT
CTACATAGCTGGCTTCGGACTACATGTAGGCACGCCTTTTCGTATTGCGA
TAAATTTCGTCAGTGTTAAATTCACCACGTGCTTTTTTTCGTGCCTTTCG
TGAAGCATGCGAGCAGCTCTCACGAGACCGGAGGGAGTCTGCTCCTTGGT
AGCATGTGGATGCTGCAGAGCACGCCCCTTCCGCGCGTGCGTGACGTTGC
TATTGCCGTTGATGTTGGTGATACTGATGCTACACCCCCCCCCAATATCG
TTCGTTGATGTCGCGGCGCCCCCGCTTGGCAGACTTGAGGAAGTACGACG
AGGCGGTCTCGCTGATGACAGGGAAGTTCAGCTATTTGTTCTACAACCCA
CAAGAGTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:2747571..2753179+

>mRNA_Ecto-sp6_S_contig9.18295.1 ID=mRNA_Ecto-sp6_S_contig9.18295.1|Name=mRNA_Ecto-sp6_S_contig9.18295.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=333bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:2747571..2753179+ (Ectocarpus species6 EcLAC_371)
GAGTTCCAGACACCTCGCGTCAATGGGGCAGTGCTGAGCCAGTTCTTGGG
CAACACGGTGTGCGTGGTGGGGAAGGTCTTGTCCTACCAAGAGGGAGATT
CAGAGGCACAACTCGAGACATCGGATGGGGCGAAGATTACCGTACAAATG
ACGGCAGGGAGTACATGGACCAGTCAGTACGTGGAAGTGATCGGACACCT
TCACGAGCCCGACAGGTTGCAAGAGTTCAAGTCCACGGATTTCGGGGACG
TGTTCGACTTGAGGAAGTACGACGAGGCGGTCTCGCTGATGACAGGGAAG
TTCAGCTATTTGTTCTACAACCCACAAGAGTAG
back to top