mRNA_Ecto-sp6_S_contig9.18123.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18123.1
Unique NamemRNA_Ecto-sp6_S_contig9.18123.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig9.18123.1 vs. uniprot
Match: D8LLX4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLX4_ECTSI)

HSP 1 Score: 549 bits (1414), Expect = 1.750e-193
Identity = 304/325 (93.54%), Postives = 308/325 (94.77%), Query Frame = 1 
Query:    1 MSVSGADKDKSTTVVEEDGYLLWLSDDDINSTAGEIQAIYQASVIEAELGTSVPHSTASRQPSTAVAIVQSIKAMQQQLVDVSLNRVIPVASDAGMARYRGAVEKFEASQKALTTVAVSLNAAQRDALKASDEVIEAAREAFGEDPEASSDSASGSAQMNQSASLSQEKRSSPCLLTQEVRQANLRLARVEQQLAVINVCSDSNADRYPPTSSNVAAASKRLRRLLQRHLRVTEKENSATRAAASDGAYAKLTVHGYHQNAQVLVDTYRCSGSACRVFSLIREYKRFAAQKAKKDASVVTHLHNVAASRYGSLLAEREEFKGVLW 975
            MSVSGADKDKSTTVVEEDGYLLWLSDDDINSTAG      QASVIEAE GTSVPHSTASR PST+VAIVQSIKAMQQQLVDVSLN  IPVASDA MARYRGAVEKFEASQKALTTVAVSLNAAQRDALKASD+VIEAAREAFGEDPEASSDSASGSAQMN SASLSQEKRSSPC LTQEVRQANLRLARVEQQLAVINVCS SN DRYPPTS NVAAASKRL RLLQRHLRVTEKENSATRAAASDGAYAKLTVHGYHQNAQVLVDTYRCSGSACRVFSL+REYKRFAAQKAKKDASVVTHLHN+AASRYGSLLAEREEFKGVLW
Sbjct:    1 MSVSGADKDKSTTVVEEDGYLLWLSDDDINSTAGTAD---QASVIEAESGTSVPHSTASRPPSTSVAIVQSIKAMQQQLVDVSLNGAIPVASDAVMARYRGAVEKFEASQKALTTVAVSLNAAQRDALKASDDVIEAAREAFGEDPEASSDSASGSAQMNPSASLSQEKRSSPCSLTQEVRQANLRLARVEQQLAVINVCSGSNTDRYPPTSPNVAAASKRLGRLLQRHLRVTEKENSATRAAASDGAYAKLTVHGYHQNAQVLVDTYRCSGSACRVFSLVREYKRFAAQKAKKDASVVTHLHNMAASRYGSLLAEREEFKGVLW 322
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18123.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LLX4_ECTSI1.750e-19393.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:1155067..1157889 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1392
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_002020.1
Cds size978
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350528.4439113-UTR-Ecto-sp6_S_contig9:1155066..11554801682350528.4439113-UTR-Ecto-sp6_S_contig9:1155066..1155480Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 1155067..1155480 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350528.4525933-CDS-Ecto-sp6_S_contig9:1155480..11555321682350528.4525933-CDS-Ecto-sp6_S_contig9:1155480..1155532Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1155481..1155532 -
1682350528.460249-CDS-Ecto-sp6_S_contig9:1156021..11563311682350528.460249-CDS-Ecto-sp6_S_contig9:1156021..1156331Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1156022..1156331 -
1682350528.4681184-CDS-Ecto-sp6_S_contig9:1156804..11573021682350528.4681184-CDS-Ecto-sp6_S_contig9:1156804..1157302Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1156805..1157302 -
1682350528.4760008-CDS-Ecto-sp6_S_contig9:1157771..11578891682350528.4760008-CDS-Ecto-sp6_S_contig9:1157771..1157889Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1157772..1157889 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18123.1prot_Ecto-sp6_S_contig9.18123.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 1155481..1157889 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18123.1

>prot_Ecto-sp6_S_contig9.18123.1 ID=prot_Ecto-sp6_S_contig9.18123.1|Name=mRNA_Ecto-sp6_S_contig9.18123.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=326bp
MSVSGADKDKSTTVVEEDGYLLWLSDDDINSTAGEIQAIYQASVIEAELG
TSVPHSTASRQPSTAVAIVQSIKAMQQQLVDVSLNRVIPVASDAGMARYR
GAVEKFEASQKALTTVAVSLNAAQRDALKASDEVIEAAREAFGEDPEASS
DSASGSAQMNQSASLSQEKRSSPCLLTQEVRQANLRLARVEQQLAVINVC
SDSNADRYPPTSSNVAAASKRLRRLLQRHLRVTEKENSATRAAASDGAYA
KLTVHGYHQNAQVLVDTYRCSGSACRVFSLIREYKRFAAQKAKKDASVVT
HLHNVAASRYGSLLAEREEFKGVLW*
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mRNA from alignment at Ecto-sp6_S_contig9:1155067..1157889-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18123.1 ID=mRNA_Ecto-sp6_S_contig9.18123.1|Name=mRNA_Ecto-sp6_S_contig9.18123.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2823bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1155067..1157889- (Ectocarpus species6 EcLAC_371)
ATGAGCGTATCGGGAGCCGACAAGGACAAGTCCACCACCGTCGTGGAAGA
AGATGGGTACCTCCTGTGGCTCTCGGACGACGATATAAACTCTACGGCAG
GTGAAATCCAGGCAATCTGTGTACCCACATCACTACAAGACTTTCTGAAT
TTCTGCGTCATCGGACACGTGTATGAGCGTTTGCCTCTCAACTTATCGCA
ATCTGTTATACTTTCTTTCACAGGAAGTATGTTTTATGCTTACGCATATT
TACAGCAGTGTCTCTCGTTCAGTACGCGGGGCTCGTTTGAAAGCGAGACA
AATACTCGTTCATTCTGTCTGCCTCATTTTACCGGCGGTCGGATGGTGGC
TGCTTCGAATAAATGTGTAGCTCCTCCTACCATCGTGGCGCACACCAGGT
ACAAACAGTTTGTGTCTCGAGTTCAGCAGTACAGTATGTACGAAACTGCC
GAGCGTATCGCGCGCCCGCTCTCTTATCTGACCGAAATATCCTGGCTCCA
TCTATCAACATCAGTATAGACTTTCCCCATCGTATCTTAGAGGCGATGTC
ATTGATCAACACAACGCCGTCGTCTCCTGCACCGCAGACCAGGCATCCGT
GATCGAAGCCGAATTAGGCACCTCTGTGCCGCACTCGACTGCATCGAGGC
AGCCCAGTACTGCCGTAGCCATCGTGCAGAGCATCAAGGCAATGCAACAG
CAGTTGGTGGACGTCTCCCTGAACCGTGTCATTCCAGTAGCCTCCGATGC
CGGGATGGCAAGGTACAGAGGGGCTGTAGAAAAATTCGAGGCTTCGCAGA
AAGCTTTGACGACCGTTGCGGTGAGCCTGAACGCCGCGCAGCGGGATGCC
CTCAAAGCATCCGACGAGGTCATAGAAGCGGCCAGGGAAGCGTTCGGTGA
AGACCCTGAGGCTTCTTCAGACTCCGCTTCCGGCAGCGCACAGATGAACC
AGTCTGCTTCTCTGTCGCAGGAGAAGCGCTCATCACCGTGTTTGTTGACA
CAAGAAGTACGCCAGGCCAATCTGAGACTGGCAAGGGTTGAACAGCAACT
TGCTGTCATCAACGTCTGTTCCGACAGCAACGCTGGTACGTAGCCTCAGG
CGGAGGCATGCGGGAGGAGGGGCAGCCATGGCCTTTATTTACTGCAGTAA
TTCGCGGCAGGCAGTGTTGCTCACTCGAAAAAGTCGCTCGTCGGGTGTAC
GTAGTGCATTCGACTTGATTGCGTGTGCGTCGCGATCGACGTGGTGTTCG
AAATATGACGCAAGGTGGTGGCGGGTGTGGGGCTTGCAACACTTCCAAGC
TTGGGACGGAGGTGGGGCTGGCAACGGTGCAAGAGTTTAGCTCGGATTGC
CTTGAAAGCGTCAATAAGAATAAAAAAGTATGCATTGGACGGTGGAGAGG
GAAAAGTGAAGACAGCACCGTGCTTTGCATGTATACCCTGTTTTTCTGGG
CCGAGATGCCGCCCAAAGGTATATATACCTGGTTGTTGACCTTCGTCAGG
GATGTCTACAATGATCACAAAAACATTCCCGTGTTTTTCTCAACTCTGTG
TGACGCAGATCGATATCCGCCAACATCATCGAATGTTGCCGCTGCTAGCA
AGAGACTCAGGAGACTGCTGCAGAGGCACCTCCGCGTTACGGAGAAGGAG
AATTCTGCCACCCGCGCTGCCGCTAGCGATGGCGCCTACGCGAAGCTGAC
GGTCCACGGCTACCACCAGAACGCGCAGGTCCTCGTCGACACCTACCGCT
GCTCTGGGAGCGCGTGTCGAGTCTTCAGCCTCATACGGGAGTACAAACGT
TTCGCGGCGCAGAAGGCAAAGAAGGATGCGTCCGTGGTTACCCATCTCCA
CAACGTGGCTGCCTCCAGGTACATACATCTGACCAGGTCTGAACGAGTTA
CGTTCCTCGGGGGGGGGTGGCCGTACGTAAGAGTGACACAGCCCAAGTGC
GGTGCAATGCGAAGTGCTTGGTGAGCGATGGGGGCCGTTCGATTCACTGC
GTAGCAGCAGCAGCAGCGCAAGAATACCTTTGTGTCGATGGAGATCTCCT
ATCAATTTTCGAGAAGCAACAACTCTGCGGTTCTTTGTGGATATTTAATA
AGTTGTTGTCGTCAAACCAGAGCGTGGAGCAGCTGATCCAACGGCGGTGC
TCGCTCGTGGAAAAACGAAAAATAGATGTTGAGGTATACATGCCCTAGCT
AAACAGGTGAGTGCAGAGCGTCGAGCTGCAGGTGGCGTGTCGTACAACTG
AGAGGCCGCTTTGTGCTGCAACTGGACAAGCGTTTCCCCCCCTCCCTACC
CCCAGTCGTAGCTTTTACGTACGTTTCTATGGACTCGTGTGTTGCGTCTC
TGCGCAGGTACGGTAGCCTACTCGCCGAGCGGGAAGAGTTCAAGGGCGTT
CTGTGGTAGGCTACGCTGCACAACTTCTTGAGAAAGACGGGCCAGCTGCG
CCCCGGACTCGTCGATAAGCCGACCTTGGCCGAACCGTTCTCTGGGTCGA
CAAAGTTACCGTGCAGCCGCGGTATGCGGCGGAGTCCAGGCGTAACTTTC
TTTCTCGAATCCTGCATTTCTCGGTCGCAATAGAAGAGAGGGGAAGGGAT
TCTGGACGAGGAGAAGGAGGCGAGGGTTTGTAGGCCGTAGCCGCGGATGG
CGTGTACAAAAGCAGAGAGTCGATCCACACGCTCTGCATCGTTGAAAGAA
AAAACCATATGACCGAATAAAAGGGCAAGCTAGGATAGGAGAACACGGTG
TAGCACCACCGTTTCAACAACCAGTTTACTTTGTAGACTTTAACCCGCCT
TCCTTCGGCTGTGGCTTTATCTC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:1155067..1157889-

>mRNA_Ecto-sp6_S_contig9.18123.1 ID=mRNA_Ecto-sp6_S_contig9.18123.1|Name=mRNA_Ecto-sp6_S_contig9.18123.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=978bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1155067..1157889- (Ectocarpus species6 EcLAC_371)
ATGAGCGTATCGGGAGCCGACAAGGACAAGTCCACCACCGTCGTGGAAGA
AGATGGGTACCTCCTGTGGCTCTCGGACGACGATATAAACTCTACGGCAG
GTGAAATCCAGGCAATCTACCAGGCATCCGTGATCGAAGCCGAATTAGGC
ACCTCTGTGCCGCACTCGACTGCATCGAGGCAGCCCAGTACTGCCGTAGC
CATCGTGCAGAGCATCAAGGCAATGCAACAGCAGTTGGTGGACGTCTCCC
TGAACCGTGTCATTCCAGTAGCCTCCGATGCCGGGATGGCAAGGTACAGA
GGGGCTGTAGAAAAATTCGAGGCTTCGCAGAAAGCTTTGACGACCGTTGC
GGTGAGCCTGAACGCCGCGCAGCGGGATGCCCTCAAAGCATCCGACGAGG
TCATAGAAGCGGCCAGGGAAGCGTTCGGTGAAGACCCTGAGGCTTCTTCA
GACTCCGCTTCCGGCAGCGCACAGATGAACCAGTCTGCTTCTCTGTCGCA
GGAGAAGCGCTCATCACCGTGTTTGTTGACACAAGAAGTACGCCAGGCCA
ATCTGAGACTGGCAAGGGTTGAACAGCAACTTGCTGTCATCAACGTCTGT
TCCGACAGCAACGCTGATCGATATCCGCCAACATCATCGAATGTTGCCGC
TGCTAGCAAGAGACTCAGGAGACTGCTGCAGAGGCACCTCCGCGTTACGG
AGAAGGAGAATTCTGCCACCCGCGCTGCCGCTAGCGATGGCGCCTACGCG
AAGCTGACGGTCCACGGCTACCACCAGAACGCGCAGGTCCTCGTCGACAC
CTACCGCTGCTCTGGGAGCGCGTGTCGAGTCTTCAGCCTCATACGGGAGT
ACAAACGTTTCGCGGCGCAGAAGGCAAAGAAGGATGCGTCCGTGGTTACC
CATCTCCACAACGTGGCTGCCTCCAGGTACGGTAGCCTACTCGCCGAGCG
GGAAGAGTTCAAGGGCGTTCTGTGGTAG
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