mRNA_Ecto-sp6_S_contig9.18229.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18229.1
Unique NamemRNA_Ecto-sp6_S_contig9.18229.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18229.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:2048124..2049370 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size247
Hectar predicted targeting categoryother localisation
Exons3
Cds size234
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350514.4613168-UTR-Ecto-sp6_S_contig9:2048123..20481351682350514.4613168-UTR-Ecto-sp6_S_contig9:2048123..2048135Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 2048124..2048135 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350514.4724557-CDS-Ecto-sp6_S_contig9:2048135..20482091682350514.4724557-CDS-Ecto-sp6_S_contig9:2048135..2048209Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2048136..2048209 +
1682350514.4834788-CDS-Ecto-sp6_S_contig9:2048996..20490951682350514.4834788-CDS-Ecto-sp6_S_contig9:2048996..2049095Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2048997..2049095 +
1682350514.4949808-CDS-Ecto-sp6_S_contig9:2049309..20493701682350514.4949808-CDS-Ecto-sp6_S_contig9:2049309..2049370Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2049310..2049370 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18229.1prot_Ecto-sp6_S_contig9.18229.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 2048136..2049370 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18229.1

>prot_Ecto-sp6_S_contig9.18229.1 ID=prot_Ecto-sp6_S_contig9.18229.1|Name=mRNA_Ecto-sp6_S_contig9.18229.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=78bp
MATTRAPASGQGFNEATDASFPPTDDADEPPPYWWMVTQPITSEQPPAED
TARPRAVWPPSTVVEEDRGKATAMWVVL
back to top

mRNA from alignment at Ecto-sp6_S_contig9:2048124..2049370+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18229.1 ID=mRNA_Ecto-sp6_S_contig9.18229.1|Name=mRNA_Ecto-sp6_S_contig9.18229.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1247bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:2048124..2049370+ (Ectocarpus species6 EcLAC_371)
TTCCACATCGCCATGGCCACCACGAGAGCACCCGCTAGCGGCCAAGGTTT
CAACGAGGCTACGGACGCATCGTTTCCCCCAACGGAGTGAGTGCAAAGAT
CAGCGGGGATTAGGCGTTATCCGGAACCGGCATTGACGCGGGTTCAACTT
TGCCGGGTAGGTTCTGGGGTGGTGTTCGTCCCCGGAGCCCTGGGGACATT
TGCCAGGCGTTCCCTGGTCACCATGGCCCTTGGTTTGCCTTGTAATCTAT
ACCCCTCTCGTATGTGGTGTCGTACCCAACTGCTTTAGGCTGTACCGTGG
TTCCCCCCCCCGCAAATACTGTGGGTTTTCCCACCTCTTGATGTATGTCA
TATATTCTGGGCGGAAGCAGTTTGATATATCGCGGCGCTGATTTTCTCGG
ACGGCTTCGGGGTCTAGTGCCGTCTCGGCAATCTCGAAACCCTTCATCGC
TTGTCTCTACTTCGCACAAACTTGATGTAAGTACGCACGAAAGAGGGAGG
GCGCAAAAACGCATGCACCCGATGCCTCTGAGGCAAGAATCAATTACCTC
TCCTCAGTCCGTTCATTGCTCTGGCGCGTGACCTTAGTTAGATATTGCAG
CAGACAGTTGAGCGTTCCTCAAGAAGCCTGAGGACTTTCGATGAGCTGTG
TGTATTTCTTTGCTCCCAATTGGGCGTTGTTTGACTGAAATGTATGGTGC
CCGGCATTGGCCGCGCAAGCATCAGGATCCCCCCCCCCCGTTTTGACCTC
TGCTCCAATGTGTGGAAACCACTACGTAACAGAGTGGCACTTCATGCCTC
GGCCCCAACGTTAGCATGGCTTGACTTGCTTTTCCCGTGTTGATGCTGAT
TTTGATTCATCTTGACCATCCAGCGATGCCGATGAGCCCCCTCCGTATTG
GTGGATGGTAACTCAGCCGATCACATCTGAGCAACCCCCTGCCGAAGACA
CAGCCAGGCCTCGAGCAGTATGGTGAGTCACGAACGAGGGATACTGGTGT
GTCTCGGACAGTGGAATAGTGACGAGGAAAATTGAACATTATTAGTACCA
CGTTGTATCCCTCCAGGAAAGGGAGGACATCAAGCCTTTCAGAACAGTAG
GGAGGCACCAGACAACCCACCGTGCCGACCATACAGCTCACAAACCATTT
CTTTCCCTCTCTCACTCGCTTTCATGGCGACATTAGGCCACCTTCAACTG
TGGTTGAAGAAGACCGGGGAAAAGCCACCGCCATGTGGGTAGTTCTG
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:2048124..2049370+

>mRNA_Ecto-sp6_S_contig9.18229.1 ID=mRNA_Ecto-sp6_S_contig9.18229.1|Name=mRNA_Ecto-sp6_S_contig9.18229.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=234bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:2048124..2049370+ (Ectocarpus species6 EcLAC_371)
ATGGCCACCACGAGAGCACCCGCTAGCGGCCAAGGTTTCAACGAGGCTAC
GGACGCATCGTTTCCCCCAACGGACGATGCCGATGAGCCCCCTCCGTATT
GGTGGATGGTAACTCAGCCGATCACATCTGAGCAACCCCCTGCCGAAGAC
ACAGCCAGGCCTCGAGCAGTATGGCCACCTTCAACTGTGGTTGAAGAAGA
CCGGGGAAAAGCCACCGCCATGTGGGTAGTTCTG
back to top