mRNA_Ecto-sp6_S_contig9.18174.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18174.1
Unique NamemRNA_Ecto-sp6_S_contig9.18174.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig9.18174.1 vs. uniprot
Match: A0A6H5KQY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQY4_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 2.610e-21
Identity = 61/64 (95.31%), Postives = 62/64 (96.88%), Query Frame = 1 
Query:    1 DALLRTEQGKRAALEKEVKRLKESTATLTQRLLDAVAKAERADEEERDAATAKAVAEREEVEAA 192
            DALLRTEQGKRAALEKEV RLKESTATLTQRLLDAVAKAERADEEERDAATAKAVAEREE+E A
Sbjct:  465 DALLRTEQGKRAALEKEVVRLKESTATLTQRLLDAVAKAERADEEERDAATAKAVAEREEIETA 528
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BLAST of mRNA_Ecto-sp6_S_contig9.18174.1 vs. uniprot
Match: D8LGX5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGX5_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 4.940e-19
Identity = 57/58 (98.28%), Postives = 58/58 (100.00%), Query Frame = 1 
Query:    1 DALLRTEQGKRAALEKEVKRLKESTATLTQRLLDAVAKAERADEEERDAATAKAVAER 174
            DALLRTEQGKRAALEKEV+RLKESTATLTQRLLDAVAKAERADEEERDAATAKAVAER
Sbjct:  461 DALLRTEQGKRAALEKEVERLKESTATLTQRLLDAVAKAERADEEERDAATAKAVAER 518
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18174.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KQY4_9PHAE2.610e-2195.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGX5_ECTSI4.940e-1998.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:1599694..1602511 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size584
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_001550.1
Cds size456
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350514.270082-UTR-Ecto-sp6_S_contig9:1599693..15998211682350514.270082-UTR-Ecto-sp6_S_contig9:1599693..1599821Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 1599694..1599821 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350514.2804365-CDS-Ecto-sp6_S_contig9:1599821..16000771682350514.2804365-CDS-Ecto-sp6_S_contig9:1599821..1600077Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1599822..1600077 -
1682350514.2896824-CDS-Ecto-sp6_S_contig9:1601046..16012121682350514.2896824-CDS-Ecto-sp6_S_contig9:1601046..1601212Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1601047..1601212 -
1682350514.2982502-CDS-Ecto-sp6_S_contig9:1602477..16025111682350514.2982502-CDS-Ecto-sp6_S_contig9:1602477..1602511Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1602478..1602511 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18174.1prot_Ecto-sp6_S_contig9.18174.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 1599822..1602511 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18174.1

>prot_Ecto-sp6_S_contig9.18174.1 ID=prot_Ecto-sp6_S_contig9.18174.1|Name=mRNA_Ecto-sp6_S_contig9.18174.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=152bp
DALLRTEQGKRAALEKEVKRLKESTATLTQRLLDAVAKAERADEEERDAA
TAKAVAEREEVEAAVAARFRFGKANERRNHRWWHRIGTTDKRPHHRQWQR
QRQQPAGIIPACCKYLWRFLAAVFCDRYTRPLSGGFAPGIRWRQVEATVL
C*
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mRNA from alignment at Ecto-sp6_S_contig9:1599694..1602511-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18174.1 ID=mRNA_Ecto-sp6_S_contig9.18174.1|Name=mRNA_Ecto-sp6_S_contig9.18174.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2818bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1599694..1602511- (Ectocarpus species6 EcLAC_371)
GACGCGCTCTTGAGGACCGAGCAGGGGAAAAGAGGTGACTACAGCAGTAG
GGTCATTAGTATCTTGTTGCTCCCACTACTGCTGCCGCTGCCGCTGCTGC
TGCTGCTGCTGCTGCTGCTGCTGCTTCGCTTTGTTGCGTGATGCGGCCCC
ATCTCTCTTGTTGTACGGTTTGGGTTCGGGGTGTTGTCGAAGTCACGTGG
GGTTCGAGAGGCAGGAGATGTCGTCGTCAACCTTCCGTTTTTTGTTGTTG
TTGTTGTTGGTGTTGGTGTTGGTGTTGGTGTTGGTGTTGGTGTTGTTTGG
TGTTGTTGTTTGGTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTT
GTTGGTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGGCGTTGTTGTTGG
CGTTGGTGGTGCGTTCCACCTGGGGAATTCTATATAACGGCGATTCAGCC
ACGATCACTGTAAGTATTGCCGCGGCTCCGCCACTATTATGTCCACGAGA
CTGGAAGGTTGTTGTCAGATTTTTTTTTAGGCAAGCAAGTACTTGTTGTC
TATGGGGCGGACCCACGTGAACACATGGGTATGGCTTGTATACATTCGTC
GATCGCCGTGCCGCATTGTGCAAAGACACATGTGGCCACCGGCGATGCAA
ATACGTTTTCTGATTATTAACAAGCGAAACGATCGCGAGTCCTGCCCAAG
AGCCCAAGCGCGCGATCTCGTTGTTGTGCTTGAGACTGTTGCTGCTGCTG
TGCTGGAACGACACCTCGTGCCTTGGAGCTGTTGAGATCATGAGAAGGAC
GCGCGAGTTAGTGGTCGTGTTCCCAACCAGCACGGCTGTGGTGGCAGTAA
TTGTCGGGTGCACCCACACCTGGGTCAGTTTTTTTTTTATATAGTTTTAG
GTGTGCGCGTGTCAAGGAAAAATGAAGATTAAAGGTGGGGAAGCCGCATC
AAACCTTTTTGCCTACGAACAGACGTGCAGCGTTTGCGCGAGAAAACTTT
CACAACGAACAGTCGCGAGGGAGGGAGGGGATGAGACCCGGAAAGAAATT
CCCTGTAGGTCAACTATCGTTGCGGTGTGTCGTTGTTTATTGAATGCAAG
TATTATACAATATTTTCTAACTTGCAATGACAGCCAGTGGGAAACGCTTT
GCGTCGTTGAATAGTTCCACTTCCTGTTTTCGGCGAAAGCAAGCGAATCG
CGAAACCGTTTGCCACAAACAAACCGCACACCACCTTGATGCAACAAAAC
AAACGACACGGTTGTTCGTCCAATCACCCCCCCTGACCCAAACTCCCAGC
CGCGTTGGAGAAGGAGGTAAAGAGGCTGAAGGAGTCTACGGCCACGCTCA
CGCAGCGTCTGCTGGACGCGGTGGCTAAGGCCGAGCGTGCGGACGAGGAA
GAGAGAGACGCGGCCACCGCGAAGGCTGTGGCGGAGCGGGAGGAGGTCGA
GGCGGCGGTGGCGGCGGCGAGAGAGGAGGAGACGGCGCGGTGTCGAGAAG
AGTTATATTCTGCTCTCGCAGAGGTGGGCGGCGTTGCTACTACTACCTTA
AGACCAACAATATAGCGGGAGATATAAATATGTCTGGTGTTTTTTTTGGT
TGGTGTCAGCCCGGCACTTCACCAGCCGACCAAAGGCGGAAGTAGGTTAG
TCTGAGTAGCACAAAGAGCGAGTACGGACAAGCCTTTGGTATGGGAAAGT
ATTGACAAGAGACAGTTTTCACTCCCGGTGTATCGCGTACTACTCTGCTC
CATGGTTGCCCCGTACGGAGTGTGCGTATGTCTTTTGCTGGCGTGGTCGA
CGGCTTACACGGCCGTGCGTTGTTGGTGAATTCCCCCCCGTTCTCTGCAT
GGGCTGCTCCTTGGTCGTGTGGGCTGAGTACTGTAGATGCTGCAGAAAAA
CGCCTTGCGGCCTGTCTATATGTGTGCCCATTTGAATCAATGGCTTCGTT
GTTGCGAGGGTTTTCTGAGTGGCCGTGGTGGTGGTGGAGGAGGAGTTGGA
GCAGAAAATGCGAGTTGTTTTCATGAGCCAACCTAGACATGTGGTTGCCA
CCAAAGGTGGTGTAAGATTTAAGATGTAGATATCTCGATCGAGTCTCTCA
GTGGTGAGTGAGGTCAATCAATCGCAGGCACGACACGTATGTCTCTCCAG
GGCGCGGTTGGAACCCCCCTCCCCCCTATCCCCCCATGCCCCCTTCTGCC
CGTTCGATGAAAAGCATGGCTTGCGTGAAATCACCTTCGCGGTCTTGTAC
GTTGATCTGTTGTTGTTGGCGTTGCAAAACCAGTACCCACGACTTCGCTC
ACGCCCCCCAAATCCGACCTCCCTTTCTCAGGAAAAGGAGAAGCTCCGCA
AGCAGATGGAGGTTCGCCTTGCCACCATGCGAGCGGGGCTGAAGCGTCGC
CTTCAGGAGGCGCGGTCAGAGCGCCGCGGGACTACCGGTTCCGTTTCGGG
AAGGCCAATGAGCGGCGGAATCACCGCTGGTGGCACCGCATCGGAACGAC
CGACAAGCGGCCGCACCACCGGCAGTGGCAACGGCAGCGGCAGCAGCCCG
CCGGAATAATCCCGGCATGCTGTAAATATTTGTGGCGTTTTCTTGCTGCG
GTTTTCTGTGACCGTTACACCCGGCCCCTTTCCGGAGGGTTTGCTCCGGG
GATACGGTGGCGGCAGGTGGAGGCGACCGTGCTTTGTTGAGGCTACCCAC
CGCAGTTAATACCCTTGTGCGAGTTTCGTTGGCCCCGAGGGTCGGGAGCT
GCCGTGGCGCGTTTTACGAAGAAGGTGGACGGGAAAGGGCGAGGCAGGGA
GGGAGGAGGAGACGAGAC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:1599694..1602511-

>mRNA_Ecto-sp6_S_contig9.18174.1 ID=mRNA_Ecto-sp6_S_contig9.18174.1|Name=mRNA_Ecto-sp6_S_contig9.18174.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=456bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1599694..1602511- (Ectocarpus species6 EcLAC_371)
GACGCGCTCTTGAGGACCGAGCAGGGGAAAAGAGCCGCGTTGGAGAAGGA
GGTAAAGAGGCTGAAGGAGTCTACGGCCACGCTCACGCAGCGTCTGCTGG
ACGCGGTGGCTAAGGCCGAGCGTGCGGACGAGGAAGAGAGAGACGCGGCC
ACCGCGAAGGCTGTGGCGGAGCGGGAGGAGGTCGAGGCGGCGGTGGCGGC
CCGGTTCCGTTTCGGGAAGGCCAATGAGCGGCGGAATCACCGCTGGTGGC
ACCGCATCGGAACGACCGACAAGCGGCCGCACCACCGGCAGTGGCAACGG
CAGCGGCAGCAGCCCGCCGGAATAATCCCGGCATGCTGTAAATATTTGTG
GCGTTTTCTTGCTGCGGTTTTCTGTGACCGTTACACCCGGCCCCTTTCCG
GAGGGTTTGCTCCGGGGATACGGTGGCGGCAGGTGGAGGCGACCGTGCTT
TGTTGA
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