mRNA_Ecto-sp6_S_contig87.17821.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig87.17821.1
Unique NamemRNA_Ecto-sp6_S_contig87.17821.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig87.17821.1 vs. uniprot
Match: D7G0M6_ECTSI (Nucleoporin_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0M6_ECTSI)

HSP 1 Score: 615 bits (1587), Expect = 7.950e-207
Identity = 307/308 (99.68%), Postives = 308/308 (100.00%), Query Frame = 1
Query:    1 MPAVAEEDHDPFGVLRNANTVLLHNLRRDELSPELQKQLTATGMASTSQAYFCDPYTNSYLAPQIQPKSFAMLPEALSRERDRVECMTFMGLLPEIDHAWMTVDNVLYLWNYHTQDFTQFRELEQVIVTVALVPPKKGVFNKEVEHVLAVATTVEVILLAVTYHEKPQETGSPRNRRIQVRRTNFRASTDGVSMLKIAAHPNGRVFMAGKDGNLYELTYSVAYGFWYSVFSVGSPVPSRQCSRLAHKSSSGGPGPVNSMFALLGLRRAERVLVDVVVDPLRNVLYTLDLAGDVDLFDLGADGNSTTQK 924
            MPAVAEEDHDPFGVLRNANTVLLHNLRRDELSPELQKQLTATGMASTSQAYFCDPYTNSYLAPQIQPKSFAMLPEALSRERDRVECMTFMGLLPEIDHAWMTVDNVLYLWNYHTQDFTQFRELEQVIVTVALVPPKKGVFNKEVEHVLAVATTVEVILLAVTYHEKPQETGSPRNRRIQVRRTNFRASTDGVSMLKIAAHPNGRVFMAGKDGNLYELTYSVAYGFWYSVFSVGSPVPSRQCSRLAHKSSSGGPGPVNSMFALLGLRRAERVLV+VVVDPLRNVLYTLDLAGDVDLFDLGADGNSTTQK
Sbjct:    1 MPAVAEEDHDPFGVLRNANTVLLHNLRRDELSPELQKQLTATGMASTSQAYFCDPYTNSYLAPQIQPKSFAMLPEALSRERDRVECMTFMGLLPEIDHAWMTVDNVLYLWNYHTQDFTQFRELEQVIVTVALVPPKKGVFNKEVEHVLAVATTVEVILLAVTYHEKPQETGSPRNRRIQVRRTNFRASTDGVSMLKIAAHPNGRVFMAGKDGNLYELTYSVAYGFWYSVFSVGSPVPSRQCSRLAHKSSSGGPGPVNSMFALLGLRRAERVLVEVVVDPLRNVLYTLDLAGDVDLFDLGADGNSTTQK 308          
BLAST of mRNA_Ecto-sp6_S_contig87.17821.1 vs. uniprot
Match: A0A835YRU3_9STRA (Nup133 N terminal like-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRU3_9STRA)

HSP 1 Score: 188 bits (477), Expect = 5.640e-50
Identity = 126/340 (37.06%), Postives = 173/340 (50.88%), Query Frame = 1
Query:   34 FGVLRNANTVLLHNLRRDELSPELQKQLTATGMASTSQAYFCDPYTNSYLAPQIQPKSFAMLPEALSRERDRVECMTFMGLLPEIDHAWMTVDNVLYLWNY--HTQDFTQFRELEQVIVTVALVPPKKGVFNKEVEHVLAVATTVEVILLAVTYHEKPQETGSPRNRRIQVRRTNFRASTDGVSMLKIAAHPNGRVFMAGKDGNLYELTYSV--AYGFWYSVFSVGSPVPSRQC---------------------SRLAHKSSSGGPGPVNSMFALLGLRRAERV---------------------LVDVVVDPLRNVLYTLDLAGDVDLFDLGADGNST 915
            F  L +A+  ++ +L +DE                 +  YFC+P+T   L   ++ +S   LP  L   + R++  TFMGLLPE++HAW++VDN L LWNY        +F+ELEQVIV V L  P++GVF   V+++L VAT VEV+L+AVT            + R+ VR T F AS+DGV+M  I  HP GR+FMAGKDGNLYEL Y    A G W S   +G    SR+C                     SR A  ++   PGP+  +     ++R  RV                     L+D+ VDPLRN LYT+D  G +  ++LG DG  T
Sbjct:   15 FSALADAHGEVVSHLLQDEAQNTTLYSQLLDNPGGAAHGYFCEPHTADQLGLPLELRSTIPLPAELLDLQQRMQVATFMGLLPELNHAWLSVDNALLLWNYVDGADVVKKFQELEQVIVAVGLAVPRQGVFKPLVKYLLVVATPVEVVLVAVT---------DGGDGRLDVRPTQFSASSDGVNMNAIRGHPCGRIFMAGKDGNLYELIYEAGGATG-WLSYVGLGGSSGSRKCRKINRSTTPSSAVWNSFKQGRSRAARGAAITSPGPMAGLL----VKRLPRVTAARAXXXXXXXXXXXAGAASLLDLAVDPLRNALYTVDSTGVLRHYNLGPDGQQT 340          
BLAST of mRNA_Ecto-sp6_S_contig87.17821.1 vs. uniprot
Match: A0A7R9YE90_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YE90_9STRA)

HSP 1 Score: 174 bits (440), Expect = 4.570e-45
Identity = 104/265 (39.25%), Postives = 163/265 (61.51%), Query Frame = 1
Query:  154 FCDPYTNSYLAPQIQPKSFAMLPEALSRERDRVECMTFMGLLPEIDHAWMTVDNVLYLWNYHTQ------DFTQFRELEQVIVTVALVPPKKGVFNKEVEHVLAVATTVEVILLAVTYHEKPQETG---SPR--NRRIQVRRTNFRASTDGVSMLKIAAHPNGRVFMAGKDGNLYELTYSVAYGFWYSVFSVGSPVPSRQCSRLAHKSSSGGPGPVNSMFA--LLGLRRAERVLVDVVVDPLRNVLYTLDLAGDVDLFDLGADGN 909
            F +PY +++    +  +    +P AL+ +   ++CM+FMGLLPEI  AW+++DN L+LWNY         DF +F  L+Q+IV+VALVPP+ GVF ++V+++LAVAT VE++LLAV + E+P+ TG    P   N  + +R T+F  S+D V+M+K+    +GR+FM G DG+LYE  Y+    F   +  +G  +  R+C +L H +S     P++S+    L  L    + LVDVVVD +R +LY L     ++ +DLG +G+
Sbjct:   11 FPEPYQSTW-GGAVHYEGVTAVPPALTEQYRSLKCMSFMGLLPEISCAWLSIDNKLFLWNYERARYQTDADFLEFDGLDQIIVSVALVPPRPGVFREKVKYLLAVATAVEIVLLAVAF-EEPEGTGVLGQPLGLNGTMTLRPTSFSVSSDNVTMMKLCGTNSGRIFMGGSDGSLYEALYANEEEFALGL-GLGFGMAGRKCRKLNHSAS-----PLSSLVPGFLKQLSAPSKPLVDVVVDDVRQILYALREDNSLEGYDLGVNGD 267          
BLAST of mRNA_Ecto-sp6_S_contig87.17821.1 vs. uniprot
Match: L8HDY8_ACACA (Nucleoporin, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HDY8_ACACA)

HSP 1 Score: 167 bits (422), Expect = 1.200e-42
Identity = 91/240 (37.92%), Postives = 139/240 (57.92%), Query Frame = 1
Query:  187 PQIQPKSFAMLPEALSRERDRVECMTFMGLLPEIDHAWMTVDNVLYLWNYHTQDFTQFRELEQVIVTVALVPPKKGVFNKEVEHVLAVATTVEVILLAVTYHEKPQETGSPRNRRIQVRRTNFRASTDGVSMLKIAAHPNGRVFMAGKDGNLYELTYSVAYGFWYSVFSVGSPVPSRQCSRLAHKSSSGGPGPVNSMFALLGLRRAERVLVDVVVDPLRNVLYTLDLAGDVDLFDLGADG 906
            PQ +      LPE L +    +EC  F+GL PEI+ AW+TVDN L LWNY ++++  + + +Q+IV+V L+PPK+ VF+++V++VL +AT VE++LLAV +     E  +P+   I +  T    S D V+M+KI     GR+FM G DG+LYEL Y    G W+S          ++  ++ H            M AL     A+  ++D+V+D  RN+LYTL   G ++++DLG DG
Sbjct:   86 PQFRLLKMIPLPETLHQMYKSIECKCFLGLFPEINRAWITVDNQLCLWNYESKEYAIWTDQDQIIVSVGLIPPKRDVFSEDVKYVLVLATPVEIVLLAVWF-----EDNTPQGE-IHLEPTRIALSADNVNMVKIVGTKRGRIFMGGSDGSLYELEYQADEG-WFS----------KRARKINHTRGI--------MSALTSYWSAKPAIIDIVIDESRNILYTLSARGAIEVYDLGTDG 300          
BLAST of mRNA_Ecto-sp6_S_contig87.17821.1 vs. uniprot
Match: A0A7S3M7K2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M7K2_9STRA)

HSP 1 Score: 162 bits (411), Expect = 3.570e-41
Identity = 103/313 (32.91%), Postives = 157/313 (50.16%), Query Frame = 1
Query:   34 FGVLRNANTVLLHNLRRDELSPELQKQLTATGMASTSQAYFCDPYTNSYLAPQIQPKSFAMLPEALSRERDRVECMTFMGLLPEIDHAWMTVDNVLYLWNYHTQDFTQFRE------------------LEQVIVTVALVPPKKGVFNKEVEHVLAVATTVEVILLAVTYHEKPQETGSPRNRRIQVRRTNFRASTDGVSMLKIAAHPNGRVFMAGKDGNLYELTYSVAYGFWYSVFSVGSPVPSRQCSRLAHKSSSGGPGPVNSMFALLGLRRAERVLVDVVVDPLRNVLYTLDLAGDVDLFDLGADGNSTT 918
            F +L  A+  L   LR DE + ++  Q +       S  Y+ +PY   +  P ++  SF  LP+ +  +  ++EC +FMG LPE+   W+TVDN L+LW Y +   T F                    + +VIV+VAL  PK GVF   V++VL VA+ VEV+LLAVT  E+            ++  T +   +D V+M+K+    +GR+FMAG DGN+YEL YS +   W ++   G      +C ++ H + +     +   F L      E  LVD+ VD +R V+Y +   G +  F LG+ G  TT
Sbjct:    3 FKILEKASETLQDKLRLDESALDIADQFSFRPDMHGSHRYYTEPYKTQW-GPLLEYGSFTALPKRILDQYTKIECASFMGTLPELGRVWVTVDNKLFLWKYTSAPSTSFPNEVAEDVDAISEDCEVYDGISEVIVSVALSAPKPGVFLDTVKYVLVVASPVEVVLLAVTCDEQGNN--------FKLVPTAYTMPSDNVAMVKVVGSQSGRIFMAGNDGNVYELDYSNSESVWSALVDAGGEHSRHKCRKINHFAWNWRLVHILPPF-LKSFAGEEDSLVDLAVDNVRQVVYAITAKGVLSAFYLGSTGTETT 305          
BLAST of mRNA_Ecto-sp6_S_contig87.17821.1 vs. uniprot
Match: A0A7S1C2I9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C2I9_9STRA)

HSP 1 Score: 150 bits (378), Expect = 8.580e-39
Identity = 104/269 (38.66%), Postives = 146/269 (54.28%), Query Frame = 1
Query:  136 STSQAYFCDPYTNSYL-APQIQ-PKSFAMLPEALSRERDRVECMTFMGLLPEIDHAWMTVDNVLYLWNY-HTQDFTQFRELEQVIVTVALVPPKKGVFNKEVEHVLAVATTVEVILLAVTYHEKPQETGSPRNRRIQVRRTNFRASTDGVSMLKIAAHPNGRVFMAGKDGNLYELTYSVAYGFWYSVFSVGSPVPSRQCSRLAHKSSSGGPGPVNSMFALLG--LRRAERVLVDVVVDPLRNVLYTLDLAGDVDLFDLGADGNSTTQKA 927
            STS+ Y+  PY    + APQ+  P     LP AL+R+   V     MGLLPEI  A++T DN LYLW++ H +DFT +  L+QVI++V LV P   V    +E++L VATTVEV+LL V++  +        + R+ +        TD VSML +A    GR+FMAG DG LYELTY    G W  +          +C +  H ++  G        AL+G  L    + L+ V VD  RN++YTL   G ++L+DLG DG    ++A
Sbjct:   52 STSRNYWASPYLRGGVWAPQVVIPSDMHPLPAALARKHAEVHAT--MGLLPEISRAYVTFDNKLYLWHFDHAEDFTAYERLDQVILSVGLVMPTP-VVQGYIEYLLVVATTVEVVLLGVSFEREDDP-----HSRMTLTPLRLTFPTDNVSMLAVAGTSAGRIFMAGGDGCLYELTYEDDRGGWRDMLGWSRGA---KCRKFNHTTTHIG----RVARALVGSLLANPGQPLIAVEVDHYRNLMYTLAQDGTIELYDLGEDGADLVRRA 305          
BLAST of mRNA_Ecto-sp6_S_contig87.17821.1 vs. uniprot
Match: I2CP24_NANGC (Nuclear pore complex protein Nup155 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CP24_NANGC)

HSP 1 Score: 153 bits (386), Expect = 2.420e-38
Identity = 101/296 (34.12%), Postives = 152/296 (51.35%), Query Frame = 1
Query:   46 RNANTVLLHNLRRDELSPELQKQLTAT---GMASTSQAYFCDPYTNSYLAPQIQPKSFAMLPEALSRERDRVECMTFMGLLPEIDHAWMTVDNVLYLWNYHTQ-DFTQFRELEQVIVTVALVPPKKGVFNKEVEHVLAVATTVEVILLAVTYHEKPQETGSPRNRRIQVRRTNFRASTDGVSMLKIAAHPNGRVFMAGKDGNLYELTYSVAYGFWYSVFSVGSPVPSRQCSRLAHKSSSGGPGPVNSMFALLGLRRAE-RVLVDVVVDPLRNVLYTLDLAGDVDLFDLGADGNSTT 918
            R A    +    R E  PE  +   A+   G  S    ++  P+ +    P ++ +S    P A+ R    ++ M+F GL  EI  AW+TVDN+LY+W+YHT+       +L+Q+IV V LV P   VF   V H+L   T   V L A+ +     E G+P +  +QVRRTNFR STDGV M K+     GR+F+AG+DG++YE+ YS     ++          S +C +L   S   GP  +     L  L +     +VD+VVDP R++LY+L     + ++DLG   ++ T
Sbjct:   42 RQAVLATIEEKMRKEGKPEDSRMNYASMSGGGVSGDMPFYIHPWKDPAFGPPVEYQSLRPFPPAILRTYSLLQAMSFQGLWTEIHRAWITVDNLLYIWDYHTEASHAIVDDLDQLIVAVGLVRPNPEVFKDTVTHLLVACTPSAVELFALCF-----EDGTP-DSALQVRRTNFRVSTDGVVMRKVVGTRTGRIFLAGQDGSVYEIQYSNEKDLYF--------YSSNKCRKLNRTS---GPASLAVSAVLRHLWKTNVSEIVDLVVDPTRSILYSLSADNLIQVYDLGEKDDACT 320          
BLAST of mRNA_Ecto-sp6_S_contig87.17821.1 vs. uniprot
Match: A0A433PJF9_9FUNG (Nucleoporin-domain-containing protein n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PJF9_9FUNG)

HSP 1 Score: 149 bits (375), Expect = 2.110e-36
Identity = 105/308 (34.09%), Postives = 153/308 (49.68%), Query Frame = 1
Query:   43 LRNANTVLLHNLRRDELSPELQKQLTATGMASTSQAYFCDPYTNSYLAPQIQPKSFAMLPEALSRERDRVECMTFMGLLPEIDHAWMTVDNVLYLWNYHT-QDFTQFRELEQVIVTVALVPPKKG-----------VFNKEVEHVLAVATTVEVILLAV---------TYHEKPQETGSPRNRRIQVRRTNFRASTDGVSMLKIAAHPNGRVFMAGKDGNLYELTYSVAYGFWYSVFSVGSPVPSRQCSRLAHKSSSGGPGPVNSMFALLGLRRAERVLVDVVVDPLRNVLYTLDLAGDVDLFDLGAD 903
            L+NA   L   L RD+  PEL   L    M+  S + +  P   S+    IQ K    LP+AL  + D ++C  FMGL PEI+ AW+TVD+ L+LWNY    DF  F + +QVIV+V LV P+ G           +F  ++E++L +AT +E+ILL +         T +   + TG      + +  T     +D VSM  I    NGR+FM G DG+LYEL Y    G W++          R+C +L H S+     P + +         E  +  + +D  RNVLYTL    ++++  LGAD
Sbjct:   88 LKNAAKTLDVQLTRDQKQPELADVL----MSIQSSSEYDQPTNPSW--QMIQRKRIITLPDALFEQYDLLQCRCFMGLFPEINRAWITVDHRLFLWNYQDGSDFYSFEDQDQVIVSVGLVKPRLGLYLSFDSSVKRIFIDQIEYLLVLATPIEIILLGMSLNGVANVGTSNSYARPTGE-----LTLYVTQMSVPSDNVSMTSIVGTDNGRIFMCGNDGHLYELIYQAEEG-WFT----------RKCRKLNHTST-----PYSHLMPTFLKLTQEDPIAAIALDDSRNVLYTLSHKSNIEVIYLGAD 368          
BLAST of mRNA_Ecto-sp6_S_contig87.17821.1 vs. uniprot
Match: A0A7S3A661_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A661_9RHOD)

HSP 1 Score: 144 bits (363), Expect = 2.720e-36
Identity = 90/230 (39.13%), Postives = 133/230 (57.83%), Query Frame = 1
Query:  217 LPEALSRERDRVECMTFMGLLPEIDHAWMTVDNVLYLWNYHT-QDFTQFRELEQVIVTVALVPPKKGVFNKEVEHVLAVATTVEVILLAVTYHEKPQETGSPRNRRIQVRRTNFRASTDGVSMLKIAAHPNGRVFMAGKDGNLYELTYSVAYGFWYSVFSVGSPVPSRQCSRLAHKSSSGG---PGPVNSMFALLGLRRAERVLVDVVVDPLRNVLYTLDLAGDVDLFDL 894
            LP+AL  +   +EC +FMG+ PEI  AW TVDN L+LWNY T  DF  F  ++Q+I + A+V P+ GVF ++V+++LAV+TTVEV+LL V +      +G      I +  T     TD V+MLK+      R+FMAG+DG L+ELTY    G   S +S+GS    R+  +L H  S+     P  V   F+       +  L+D+ VD  R++L+ L   G+V ++D+
Sbjct:   47 LPKALFEQYSHLECKSFMGIFPEIHRAWFTVDNRLFLWNYATGSDFYPFEGIDQIITSAAIVEPRPGVFVEDVKYLLAVSTTVEVMLLGVCF------SGPSVTSEITLVPTQISVITDNVAMLKLVGSRGRRLFMAGRDGCLHELTYQ---GETNSFWSLGS----RKARKLNHSKSAFSSLIPSSVRLFFS------GDDPLIDLAVDDNRDLLFALSEYGNVTVYDI 257          
BLAST of mRNA_Ecto-sp6_S_contig87.17821.1 vs. uniprot
Match: A0A261XXE4_9FUNG (Uncharacterized protein n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261XXE4_9FUNG)

HSP 1 Score: 148 bits (373), Expect = 3.740e-36
Identity = 98/294 (33.33%), Postives = 149/294 (50.68%), Query Frame = 1
Query:   43 LRNANTVLLHNLRRDELSPELQKQLTAT------GMASTSQAYFCDPYTNSYLAPQIQPKSFAMLPEALSRERDRVECMTFMGLLPEIDHAWMTVDNVLYLWNY-HTQDFTQFRELEQVIVTVALVPPKKGVFNKEVEHVLAVATTVEVILLAVTYHEKPQETGSPRNRRIQVRRTNFRASTDGVSMLKIAAHPNGRVFMAGKDGNLYELTYSVAYGFWYSVFSVGSPVPSRQCSRLAHKSSSGGPGPVNSMFALLGLRRAERVLVDVVVDPLRNVLYTLDLAGDVDLFDLGAD 903
            LRNA   +   L +++  PEL   L  T      G +S S+  +          P    +    LP A+ ++ D ++C +FMGLLPEI+ AW+TVDN L+LWNY    DF  F + +Q+IV+V LVPPK+ VF   +E+VL +ATT+E+ILL V+  +      S R +++ +  T     +D VSM  I    +GR+FM G DG+LYE+TY  A  F+      GS    R  ++          G + +         A   + D+ VD  R +LY L     + +++L  +
Sbjct:   16 LRNAAKTVDEQLTQEQKYPELLDLLANTAPGAGVGGSSASEQQW----------PVFLKQRAVTLPNAIVQQYDILQCRSFMGLLPEINRAWITVDNKLFLWNYIDGTDFYSFEDQDQIIVSVGLVPPKRDVFVDGIEYVLVIATTLEIILLGVSTTDPSGAPSSYRGQKLSLFVTQLSVPSDDVSMTNIVGTADGRIFMCGDDGHLYEVTYKAAETFF------GSRCQKRNLTQ----------GALYNFIPSFFNFTAHDKVTDITVDDQRKLLYALTAKSSIRVYNLATE 283          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig87.17821.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0M6_ECTSI7.950e-20799.68Nucleoporin_N domain-containing protein n=1 Tax=Ec... [more]
A0A835YRU3_9STRA5.640e-5037.06Nup133 N terminal like-domain-containing protein n... [more]
A0A7R9YE90_9STRA4.570e-4539.25Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
L8HDY8_ACACA1.200e-4237.92Nucleoporin, putative n=1 Tax=Acanthamoeba castell... [more]
A0A7S3M7K2_9STRA3.570e-4132.91Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S1C2I9_9STRA8.580e-3938.66Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
I2CP24_NANGC2.420e-3834.12Nuclear pore complex protein Nup155 (Fragment) n=1... [more]
A0A433PJF9_9FUNG2.110e-3634.09Nucleoporin-domain-containing protein n=1 Tax=Endo... [more]
A0A7S3A661_9RHOD2.720e-3639.13Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A261XXE4_9FUNG3.740e-3633.33Uncharacterized protein n=1 Tax=Bifiguratus adelai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig87contigEcto-sp6_S_contig87:410049..413763 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score617.1
Seed ortholog evalue4.5e-174
Seed eggNOG ortholog2880.D7G0M6
Preferred nameNUP155
Model size929
KEGG koko:K14312
KEGG TC1.I.1
KEGG Pathwayko03013,map03013
KEGG ModuleM00427
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000212,GO:0000226,GO:0000280,GO:0000972,GO:0001508,GO:0001555,GO:0001654,GO:0003006,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003674,GO:0003682,GO:0005198,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005730,GO:0005737,GO:0005886,GO:0005911,GO:0006403,GO:0006405,GO:0006406,GO:0006606,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0006928,GO:0006936,GO:0006941,GO:0006996,GO:0006997,GO:0006998,GO:0007010,GO:0007015,GO:0007017,GO:0007049,GO:0007051,GO:0007053,GO:0007088,GO:0007096,GO:0007140,GO:0007154,GO:0007267,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0007295,GO:0007300,GO:0007303,GO:0007346,GO:0007423,GO:0007444,GO:0008015,GO:0008016,GO:0008104,GO:0008150,GO:0008152,GO:0008284,GO:0009506,GO:0009507,GO:0009536,GO:0009790,GO:0009792,GO:0009888,GO:0009987,GO:0009994,GO:0010256,GO:0010467,GO:0010564,GO:0010941,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016032,GO:0016043,GO:0016049,GO:0016482,GO:0017038,GO:0017056,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0023052,GO:0030029,GO:0030036,GO:0030048,GO:0030054,GO:0030154,GO:0030715,GO:0030717,GO:0031090,GO:0031503,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032386,GO:0032388,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033043,GO:0033157,GO:0033365,GO:0034399,GO:0034504,GO:0034613,GO:0035220,GO:0035295,GO:0035637,GO:0036228,GO:0040007,GO:0042127,GO:0042306,GO:0042307,GO:0042391,GO:0042886,GO:0042981,GO:0043067,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043900,GO:0043902,GO:0044057,GO:0044085,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044611,GO:0044703,GO:0045184,GO:0045477,GO:0045595,GO:0046822,GO:0046824,GO:0046907,GO:0048232,GO:0048285,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048522,GO:0048588,GO:0048589,GO:0048599,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0050657,GO:0050658,GO:0050789,GO:0050793,GO:0050794,GO:0051028,GO:0051049,GO:0051050,GO:0051128,GO:0051168,GO:0051169,GO:0051170,GO:0051179,GO:0051222,GO:0051223,GO:0051225,GO:0051234,GO:0051236,GO:0051239,GO:0051240,GO:0051276,GO:0051321,GO:0051641,GO:0051649,GO:0051704,GO:0051726,GO:0051783,GO:0055044,GO:0055049,GO:0055050,GO:0060047,GO:0060048,GO:0060284,GO:0060341,GO:0060429,GO:0061024,GO:0061337,GO:0061982,GO:0061988,GO:0065007,GO:0065008,GO:0070013,GO:0070192,GO:0070201,GO:0070252,GO:0070727,GO:0070925,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072594,GO:0072657,GO:0086001,GO:0086002,GO:0086003,GO:0086014,GO:0086019,GO:0086026,GO:0086065,GO:0086066,GO:0090087,GO:0090306,GO:0090316,GO:0090435,GO:0097435,GO:0140013,GO:1900180,GO:1900182,GO:1901987,GO:1901990,GO:1903046,GO:1903522,GO:1903827,GO:1903829,GO:1904589,GO:1904591,GO:1904748,GO:1904951,GO:1905475,GO:1905879,GO:1905936,GO:1905938,GO:2000241,GO:2000243
Exons4
EggNOG free text desc.protein localization to nuclear inner membrane
EggNOG OGsCOG5308@1,KOG1900@2759
Cds size927
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350497.4500687-CDS-Ecto-sp6_S_contig87:410048..4102401682350497.4500687-CDS-Ecto-sp6_S_contig87:410048..410240Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig87 410049..410240 +
1682350497.4677074-CDS-Ecto-sp6_S_contig87:411763..4119461682350497.4677074-CDS-Ecto-sp6_S_contig87:411763..411946Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig87 411764..411946 +
1682350497.4787784-CDS-Ecto-sp6_S_contig87:412764..4129261682350497.4787784-CDS-Ecto-sp6_S_contig87:412764..412926Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig87 412765..412926 +
1682350497.4887114-CDS-Ecto-sp6_S_contig87:413373..4137631682350497.4887114-CDS-Ecto-sp6_S_contig87:413373..413763Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig87 413374..413763 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig87.17821.1prot_Ecto-sp6_S_contig87.17821.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig87 410049..413763 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig87.17821.1

>prot_Ecto-sp6_S_contig87.17821.1 ID=prot_Ecto-sp6_S_contig87.17821.1|Name=mRNA_Ecto-sp6_S_contig87.17821.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=309bp
MPAVAEEDHDPFGVLRNANTVLLHNLRRDELSPELQKQLTATGMASTSQA
YFCDPYTNSYLAPQIQPKSFAMLPEALSRERDRVECMTFMGLLPEIDHAW
MTVDNVLYLWNYHTQDFTQFRELEQVIVTVALVPPKKGVFNKEVEHVLAV
ATTVEVILLAVTYHEKPQETGSPRNRRIQVRRTNFRASTDGVSMLKIAAH
PNGRVFMAGKDGNLYELTYSVAYGFWYSVFSVGSPVPSRQCSRLAHKSSS
GGPGPVNSMFALLGLRRAERVLVDVVVDPLRNVLYTLDLAGDVDLFDLGA
DGNSTTQKA
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mRNA from alignment at Ecto-sp6_S_contig87:410049..413763+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig87.17821.1 ID=mRNA_Ecto-sp6_S_contig87.17821.1|Name=mRNA_Ecto-sp6_S_contig87.17821.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3715bp|location=Sequence derived from alignment at Ecto-sp6_S_contig87:410049..413763+ (Ectocarpus species6 EcLAC_371)
ATGCCTGCGGTAGCCGAGGAAGACCATGACCCGTTTGGAGTGCTTCGCAA CGCCAACACTGTGCTGCTGCACAACCTCCGCAGGGACGAGCTCTCTCCCG AGCTCCAGAAGCAGCTGACGGCGACTGGGATGGCGTCCACGTCGCAAGCT TACTTCTGCGATCCCTACACCAACTCGTACTTGGCACCGCAGGTGTGACA AAGGCAGCCAGCCTATCGGCGCGCGCAGCAGATAGCCACACTTTTTTTAA TATTTGCGACGGCAGCCCCTTGGCGAAAGGCACGGATAGATAGGTGCCAC AGGTCCCCAGCAGTAGCGGACACCAGACTAGTAACAGAGACAATTCCCCC TACAGCAGTAGTGATATTGATTGCAACTGTTTTCTGGGGTTGCCCTCTCA CTCAACTATAATGTATGCACGCCTCATTATCTTTGCGGAAGAGTACATCT AGCTGCGGTGAGAATTGCGCACTTGAAACATGTGGGGTTCAGGGTTCACG AATAGAGTCGGCGACGTCGGTGCTCTGCAACCCAAATGAACATCGGATAT GCTCCGTAATAACTGCAGCATTCTGCACGTTTACATCATCCTTGGGAGAA AGATTGCAGCTGTGTTCAAGTCCCATTCGTCACGCAATTCCTACAGCAGT ACTGCTGATCCTCCTTCGAGGAACATTCGCTTATGATCAGCCGGGGGGAT TTTAGTCATCAAACCACAGACGATACAGGATCCCCTATTCCAATGTTTGC ACGCCAAAGTTCGGTGTTCTCGTACAAGACTTCACTGTCAGCACGCATGA ATATATACGTACGTGGCAAAGCCCCTCTTTTACCCCATCTACCCTCCCCC GCTTCTGGTTCATCCTCTCGTCAAACGTATAGCTTGGGCCGGCGAAAACT AGAGATGGGCACCGTGTGAAAAATAACCGGTAAAACTCGGTTATTTGGGA ACCCAGCGTTCATGAGTGACGGTTATAAAAAAAAAACGGAGTTATTTTGG AAAAGGAGGCGTTTGCAAACGGTCATATCCGGTCAACCGGTTATCCGGTC AACCGGTTATCCGGTCAACCGGTTATCCGGTCAACTGGCGCTGCAAAAAC GATTATTCGGCATTTTTTGTTTGAGAATAGCACCTCCTAGCCGGTTTTTG CTCATTGGTTGTTCCATTCTGGTGCCCATCTcTTCTCTGACACTACTATA GTACATCGTGTGAGTGAAGTACTGCGCCATACACCGGCGGAACACGGACG GGGTGATTGAAAGATAGCGTGCATGCCATTTAAAGCCACAAAACAGACCC AAGTTTGAGAGATTGCGGAGGCGTTTCTTGACAGAACCGGTTAAACAACC GGTTATACCGGTCATTGGATTTTGAGAATAACGCCTCCTAGCCGGTCGTC GGTTATTGCTTTTTCACGTCCGGTGCCCATCTCTAGCGAAAACCCGGCGT GTTGCTCCGTCCCGGTATTGTAGGTGCGAGGTAGATGCGGAGACTGTGGT CTCTATCGACGACGGCATGCGTTTACCCCCCTCTCCCCGCCGCGGCCCTA ACCCACATCCTTCTCGAACACGATTGGCCCTCTGCCGAGACTGGAACCCC CCCCCGTGAATTTAATGGAAATCCAAACCGCTGCTGTAGCCAGCCGGAAC CTAACCGTCCCATCGTCATCCCTACTACCCTTCTTCCCCGCGAACGCGTT TTTCCGACGGCGTAGATACAGCCGAAGTCGTTCGCGATGCTGCCGGAGGC CCTGTCGCGAGAGCGAGACCGCGTCGAGTGCATGACCTTCATGGGTTTGT TGCCGGAGATCGACCACGCGTGGATGACGGTGGACAACGTGCTTTACCTC TGGAACTACCACACCCAGGACTTCACGCAGTTCAGGGAGCTGGAGCAGGT GCCGACGCGTGTGTGCGTGCCGCCGCCCTCTTTTTTTCGTTTTTTCTTCA GAAAGTATACCACGTACCATCACAGCAAGGAACACCTGTTGGAGATATAT CCACCGCATGATAGTAGTCTAACGGAATGTGTTGAAGGCTTTGCGGTGAG TGGGTGGGACACAAACCTGCTGGATACTGCTGGGCTTGTTTTGGGTCTTT TTAAACCTTTACATTACGTTGTTGTTGTTCTTGCATGTCGTGAGTCTATT TGAGCCTTTGCACTGAATCATTGTTGTTGTTGCATGTCGTAACGTTACGC TGCACGTCCCCGACGAGGGGTACCTTCACACAGCAGTGGGTCATCTGCTG TTGGTTCGTGTTGCGTGTGTGCGGTTCTGCCGTGTCACCTGTCATGAAGG TTAGACCGCACGtgttgcacctacaCAGGGGAGGAAGGAcCCCCCCGACC gAAAAATACACCCGAAAGACGAACGGCCACCTGAAAATTTCAACCTTTTC ACCAAGTAGACGCATCGTTAGGCAACTGTGGCGTATATTAGAATAGTGGT ATTCATGCGAACACgtttcaaGTGTGAGAAGAACCGATCCTTTGCAGCAG ACACACGGGGGAAAGTGGCGTCCTCTTTCGACGCAGCGCAACAAACATTT TCGAGCGGGTGGTGCCTTCCGTGGTCCAACTCTCTGCTGCCTGCGTTTGT TGAACCCCGCCCCCTCCGTCCTCTCGAGGACGCGTGGTCAATGGTCTAAC CACTAAGGCATGCGAAACATAAGAATACCCCCCCCTCCCCCACGCAATGG CAAACCGGGGTCCCAGGTGATCGTGACGGTGGCGCTGGTCCCCCCCAAGA AGGGCGTATTCAACAAGGAGGTGGAGCATGTCCTCGCGGTCGCGACCACG GTAGAGGTGATCCTGCTCGCGGTAACGTACCATGAGAAACCGCAGGAGAC CGGGAGTCCGAGGAACCGACGGATACAGGTGTGTGCGTGTGTGTTTTGTC ATTGGCATCGACCGCGTTATGACCGACTGGCCAACGGAAATAGTTGGTGC CTCAGTTTCACATGGGGATACTAATGTGAACACGATTTTCTACTCTGCGC TCCCCCCCCCTGGCAGCAAGGGCGCCTAAACGATAGTAACGGTACCATCA TTATCATGACAGAGTGTTTTGACAACCACAGGATCATGAACAACGACGCT TCAACAGCAGCGGCAGCAGCAGCAGCGGCAGCATCATTATCAACCAGTAG CAAAAACACAACAGCAACAACCGCAGCAATAATAACAGAGAACCGAACAA ACAATCAACAGCAGTAATAGTAACTGAACATCATCCACACACCAACTATC GAGAACAACAACGCCAACAACCACAGCGACAACGCTACCACCACCGCCAC CAACCACCGCCACCGAACAACCTAGGTGCGACGGACCAACTTCCGGGCCT CGACGGACGGCGTCTCCATGCTCAAGATCGCGGCGCACCCGAACGGCAGG GTCTTCATGGCCGGAAAAGACGGCAACCTGTACGAGCTCACCTACAGCGT GGCCTACGGCTTCTGGTACTCGGTCTTCTCGGTGGGCAGCCCGGTCCCCT CCCGGCAGTGCAGCCGGCTCGCCCACAAGTCCTCCAGCGGGGGACCAGGC CCCGTGAACTCGATGTTTGCCCTGTTGGGCCTGCGGCGCGCGGAGCGGGT GCTTGTGGATGTGGTGGTGGACCCCCTCAGGAACGTTCTCTACACGCTCG ACCTGGCGGGTGATGTAGACCTGTTCGACCTCGGAGCTGATGGGAACAGC ACCACCCAGAAGGCA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig87:410049..413763+

>mRNA_Ecto-sp6_S_contig87.17821.1 ID=mRNA_Ecto-sp6_S_contig87.17821.1|Name=mRNA_Ecto-sp6_S_contig87.17821.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=927bp|location=Sequence derived from alignment at Ecto-sp6_S_contig87:410049..413763+ (Ectocarpus species6 EcLAC_371)
ATGCCTGCGGTAGCCGAGGAAGACCATGACCCGTTTGGAGTGCTTCGCAA
CGCCAACACTGTGCTGCTGCACAACCTCCGCAGGGACGAGCTCTCTCCCG
AGCTCCAGAAGCAGCTGACGGCGACTGGGATGGCGTCCACGTCGCAAGCT
TACTTCTGCGATCCCTACACCAACTCGTACTTGGCACCGCAGATACAGCC
GAAGTCGTTCGCGATGCTGCCGGAGGCCCTGTCGCGAGAGCGAGACCGCG
TCGAGTGCATGACCTTCATGGGTTTGTTGCCGGAGATCGACCACGCGTGG
ATGACGGTGGACAACGTGCTTTACCTCTGGAACTACCACACCCAGGACTT
CACGCAGTTCAGGGAGCTGGAGCAGGTGATCGTGACGGTGGCGCTGGTCC
CCCCCAAGAAGGGCGTATTCAACAAGGAGGTGGAGCATGTCCTCGCGGTC
GCGACCACGGTAGAGGTGATCCTGCTCGCGGTAACGTACCATGAGAAACC
GCAGGAGACCGGGAGTCCGAGGAACCGACGGATACAGGTGCGACGGACCA
ACTTCCGGGCCTCGACGGACGGCGTCTCCATGCTCAAGATCGCGGCGCAC
CCGAACGGCAGGGTCTTCATGGCCGGAAAAGACGGCAACCTGTACGAGCT
CACCTACAGCGTGGCCTACGGCTTCTGGTACTCGGTCTTCTCGGTGGGCA
GCCCGGTCCCCTCCCGGCAGTGCAGCCGGCTCGCCCACAAGTCCTCCAGC
GGGGGACCAGGCCCCGTGAACTCGATGTTTGCCCTGTTGGGCCTGCGGCG
CGCGGAGCGGGTGCTTGTGGATGTGGTGGTGGACCCCCTCAGGAACGTTC
TCTACACGCTCGACCTGGCGGGTGATGTAGACCTGTTCGACCTCGGAGCT
GATGGGAACAGCACCACCCAGAAGGCA
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