mRNA_Ecto-sp6_S_contig87.17820.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig87.17820.1
Unique NamemRNA_Ecto-sp6_S_contig87.17820.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig87.17820.1 vs. uniprot
Match: D7G0M7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0M7_ECTSI)

HSP 1 Score: 431 bits (1109), Expect = 4.090e-153
Identity = 207/209 (99.04%), Postives = 209/209 (100.00%), Query Frame = 1
Query:    1 VNKNASDEVFDGSYSPPPSDPRFSTVTRMELTKSVHTPGYAIRRPKEGFDRLNANRTNYSLGQHPTTELKTATAELQMKHPRDQPRVDQPAVGGSTLRNGSYRLDTSARDSVRRGGGGGEGVLGVRFDLINGREDEGARGKVAMRTGPRRTLNNAEKEVLHPTDGWGDVPGGMYVDILTGKDRRKFDVPERGAGAPVRSDTVSGRTRPW 627
            VNKNASDEVFDGSYSPPPSDPRFSTVTRMELTKSVHTPGYAIRRPKEGFDRLNANRTNYSLGQHPTTELKTATAELQMKHPRDQPRVDQPAVGGSTLR+GSYRLDTSARDSVRRGGGGGEGVLGVRFD+INGREDEGARGKVAMRTGPRRTLNNAEKEVLHPTDGWGDVPGGMYVDILTGKDRRKFDVPERGAGAPVRSDTVSGRTRPW
Sbjct:    2 VNKNASDEVFDGSYSPPPSDPRFSTVTRMELTKSVHTPGYAIRRPKEGFDRLNANRTNYSLGQHPTTELKTATAELQMKHPRDQPRVDQPAVGGSTLRDGSYRLDTSARDSVRRGGGGGEGVLGVRFDVINGREDEGARGKVAMRTGPRRTLNNAEKEVLHPTDGWGDVPGGMYVDILTGKDRRKFDVPERGAGAPVRSDTVSGRTRPW 210          
BLAST of mRNA_Ecto-sp6_S_contig87.17820.1 vs. uniprot
Match: A0A7S2S3K8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S3K8_9STRA)

HSP 1 Score: 113 bits (283), Expect = 4.060e-27
Identity = 74/220 (33.64%), Postives = 115/220 (52.27%), Query Frame = 1
Query:    1 VNKNASD-EVFDGSYSPPPSDPRFSTVTRMELTKSVHTPGYAIR----RPKEGFDRLNANRTNYSLGQHPTTELKT-----ATAELQMKHPRDQPRVDQPAVGGSTLRNGSYRLDTSARDSVRRGGGGGEGVLGVRFDLINGREDEGARGKVAMRTGPRRTLNNAEKEVLHPTDGWGDVPGGMYVDILTGKDRRKFDVPER-GAGAPVRSDTVSGRTRPW 627
            ++KNASD +   G+   P  DPR   V +       H+   A+     R +  FDRL+A++TNY +    T+ L+T      T+ +   HP+ +P+ +Q A+GG     G Y  +  A+++V+RGGGGGEG LGVRF+++       AR    ++TGPR ++N  E      ++ +GD    M  +I+TGK    F  P+  G    +R +    RTRPW
Sbjct:   65 IHKNASDKDSIQGAEGGPYHDPR--KVFKTTFASDYHSGASALSEKYVRERPAFDRLSASKTNYEI----TSPLETIPPFKTTSHVLHAHPKTRPQPEQAAIGGWRTSTGEYCTNELAKETVKRGGGGGEGSLGVRFNIVTNEGAPRARETALLQTGPRVSMNKKEPW-RQGSNRFGD--SDMQTNIITGKQHAHFQAPKPLGPADLLRPNEAIARTRPW 275          
BLAST of mRNA_Ecto-sp6_S_contig87.17820.1 vs. uniprot
Match: A0A8J2T189_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T189_9STRA)

HSP 1 Score: 110 bits (274), Expect = 4.280e-26
Identity = 81/212 (38.21%), Postives = 112/212 (52.83%), Query Frame = 1
Query:    1 VNKNASDE--VFDGSYSPPPSDPRFSTVTRMELTKSVHTPGYAIRRPKEGFDRLNANRTNYSLGQHPTTELKTATAELQMKHPRDQPRVDQPAVGGSTLRNGSYRLDTSARDSVRRGGGGGEGVLGVRFDLINGREDEGAR-GKVAMRTGPRRTLNNAEKEVLHPTDGWGDVPGGMYVDILTGKDRRKFDVPERGAGAPVRSDTVSGRTRPW 627
            V+KNASD+  V D +  PP     F++    E  +   T      + +  FDR ++  TNYSLG+ P  E KT T ++   HP  +PRVDQ  +GG    +GSY+L+  A DS++RGGGGG G LG+ F++I G E  G R GK A+  G RRTLN  +         + + PG  Y  + T +D      P +      RS+ V  RTRPW
Sbjct:   49 VDKNASDKEAVIDSTGFPP----CFTSTNTAEFNRDTTTFSRRYVKREPCFDRQSSCATNYSLGEAPF-ETKT-TNDVLFAHPLTKPRVDQGEIGGWKHPDGSYKLEQEAIDSIKRGGGGGAGCLGISFNVITGEEIPGIREGKRAI-YGARRTLNVTQ---------YREHPGDSYNPV-TMRDVPATAPPHQTTEMLKRSEDVHLRTRPW 243          
BLAST of mRNA_Ecto-sp6_S_contig87.17820.1 vs. uniprot
Match: A0A7S2F937_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2F937_9STRA)

HSP 1 Score: 107 bits (266), Expect = 1.220e-24
Identity = 75/212 (35.38%), Postives = 106/212 (50.00%), Query Frame = 1
Query:    1 VNKNASDEV-FDGSYSPPPSDPRFSTVTRMELTKSVHTPGYAIRRPKEGFDRLNANRTNYSLGQH--PTTELKTATAELQMKHPRDQPRVDQPAVGGSTLRNGSYRLDTSARDSVRRGGGGGEGVLGVRFDLINGREDEGARGKVAMRTGPRRTLNNAEKEVLHPTDGWGDVPGGMYVDILTGKDRRKFDVPERGAGAPVRSDTVSGRTRPW 627
            ++KNASD+V   G     P     S         +  +  Y    P   +DR+++ +TNYSLG++  P   + T  +    K P D   V Q  +GG    +GSY  +  + DS+ RGGGGGEG LGV+F+++N   D GAR +VAMRTG R ++N  E       D +GD      V+I     +R    P + A A +R D    RTRPW
Sbjct:   68 MDKNASDKVAIQGGGVVQPRQYENSYKAEFHPGTTALSSAYVKEGP--AYDRISSCKTNYSLGEYRPPGPAISTTHSHHPYKMPTD---VQQANIGGWKRSDGSYHCEHESNDSIVRGGGGGEGSLGVQFNIVNNASDPGARDRVAMRTGARVSVNKREPWSAG-CDAYGDPGPDGPVNIFGKARQRPQAPPHQTAQALLRPDHDVLRTRPW 273          
BLAST of mRNA_Ecto-sp6_S_contig87.17820.1 vs. uniprot
Match: A0A7S2D1K6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D1K6_9STRA)

HSP 1 Score: 100 bits (250), Expect = 2.910e-22
Identity = 79/215 (36.74%), Postives = 105/215 (48.84%), Query Frame = 1
Query:    7 KNASD-EVFDGS---YSPPPSDPRFSTVTRMELTKSVHTPGYAIRRPKEGFDRLNANRTNYSLGQHPTTELKTA-TAELQMKHPRDQPRVDQPAVGGSTLRNGSYRLDTSARDSVRRGGGGGEGVLGVRFDLINGREDEGARGKVAMRTGPRRTLNNAEKEVLHPTDGWGDVPGGMY--VDILTGKDRRKFDVP-ERGAGAPVRSDTVSGRTRPW 627
            KN SD E F G    Y  P    R +  +      ++H+  Y    PK  + RL A RTNY+LG +   E K A T+      P    RV   A  G       Y  D  AR+S+ RGGGGGEG LG RFD+ING++D   R +V+MRTG R ++N  E     P     D  G  +  V+IL+G+ R + + P ++ A    R D     TRPW
Sbjct:   74 KNHSDLESFQGGPPKYKDPNVVYRTTKASDFNHESTLHSNEYMKSEPK--YTRLTAGRTNYTLGAY---EGKLASTSHTHHAPPCPIERVKGQATIGGWQTGNKYHTDIHARESIMRGGGGGEGSLGTRFDIINGKDDPSFRNRVSMRTGARVSVNKRE-----PWSQGADRYGDHHEPVNILSGQPRTRHNPPPQQNALQLRRPDQPLLATRPW 278          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig87.17820.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G0M7_ECTSI4.090e-15399.04Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2S3K8_9STRA4.060e-2733.64Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A8J2T189_9STRA4.280e-2638.21Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2F937_9STRA1.220e-2435.38Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2D1K6_9STRA2.910e-2236.74Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig87contigEcto-sp6_S_contig87:406914..408053 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size630
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_001520.1
Cds size630
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350497.4058201-CDS-Ecto-sp6_S_contig87:406913..4074991682350497.4058201-CDS-Ecto-sp6_S_contig87:406913..407499Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig87 406914..407499 -
1682350497.4163163-CDS-Ecto-sp6_S_contig87:408009..4080531682350497.4163163-CDS-Ecto-sp6_S_contig87:408009..408053Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig87 408010..408053 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig87.17820.1prot_Ecto-sp6_S_contig87.17820.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig87 406914..408053 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig87.17820.1

>prot_Ecto-sp6_S_contig87.17820.1 ID=prot_Ecto-sp6_S_contig87.17820.1|Name=mRNA_Ecto-sp6_S_contig87.17820.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=210bp
VNKNASDEVFDGSYSPPPSDPRFSTVTRMELTKSVHTPGYAIRRPKEGFD
RLNANRTNYSLGQHPTTELKTATAELQMKHPRDQPRVDQPAVGGSTLRNG
SYRLDTSARDSVRRGGGGGEGVLGVRFDLINGREDEGARGKVAMRTGPRR
TLNNAEKEVLHPTDGWGDVPGGMYVDILTGKDRRKFDVPERGAGAPVRSD
TVSGRTRPW*
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mRNA from alignment at Ecto-sp6_S_contig87:406914..408053-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig87.17820.1 ID=mRNA_Ecto-sp6_S_contig87.17820.1|Name=mRNA_Ecto-sp6_S_contig87.17820.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1140bp|location=Sequence derived from alignment at Ecto-sp6_S_contig87:406914..408053- (Ectocarpus species6 EcLAC_371)
GTCAACAAGAACGCCTCGGACGAGGTCTTCGACGGGAGTTACAGGTAACG CACAACCGTGTCACGCTGGTCCGACTGGCTCAGAGAATTGGTTGGGATAC TATTGCGGCAGCTCGGAAACATTATCCCAACACAGCAGTAGGAACGAGTT AATGCGTTATAAAAGGGGAGTTTGAGGGCGCCGATGACACCTTCTCGCCG ACACGAGCGGAGTGCCTCACCGGGGGATGCTGTTTCACCCCCCGTATTCT CACTGCCAGAAACATCCAAGTGATCAAGCAGAATCGGCCACACAAGGGCA TCAAGCTGCATGCTAGTGGTGGTTTGTGCGACCACCCGTACCCACACACA TGGAGATTGCCTCATTTCTTTTGCGACCGATGTGTCACGCCGGTCCGATA CGGTTTATATCGTTGATTTATCTTTTGTAAATACGTGTCCTTTCGCAGAT AATTAAAACGTTCCTTTTACTGAATCCTATTCACACGAAATAATACGAAC ATCCATGCATCCTTACTCCAACGGCGTTCTTTCTTGCCGTACGCACGCTA AAAGTCCACCACCGTCGGACCCGCGCTTCTCCACCGTCACGAGGATGGAG CTCACCAAGTCCGTGCACACCCCGGGCTACGCCATCCGGCGGCCGAAGGA GGGCTTCGACCGCCTCAACGCAAACCGCACCAACTACTCGCTCGGCCAGC ACCCGACGACGGAGCTCAAGACCGCCACGGCGGAGCTCCAGATGAAGCAT CCTCGCGACCAGCCACGCGTGGACCAGCCTGCTGTGGGGGGATCGACGCT CCGGAACGGGTCCTACCGCCTCGACACGTCCGCGAGGGACAGCGTTCGGC GCGGGGGCGGCGGCGGAGAGGGGGTGCTCGGGGTGCGGTTCGATCTGATC AACGGGCGGGAGGACGAGGGCGCTAGGGGGAAGGTCGCCATGCGAACGGG GCCGCGGCGGACGCTGAACAACGCGGAGAAGGAGGTGCTTCATCCGACGG ACGGTTGGGGGGACGTGCCCGGGGGGATGTACGTCGACATCTTGACGGGG AAGGACAGGCGGAAGTTCGACGTGCCAGAGCGAGGGGCTGGGGCTCCCGT CAGGAGTGATACCGTTTCGGGGAGGACGCGCCCTTGGTAG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig87:406914..408053-

>mRNA_Ecto-sp6_S_contig87.17820.1 ID=mRNA_Ecto-sp6_S_contig87.17820.1|Name=mRNA_Ecto-sp6_S_contig87.17820.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=630bp|location=Sequence derived from alignment at Ecto-sp6_S_contig87:406914..408053- (Ectocarpus species6 EcLAC_371)
GTCAACAAGAACGCCTCGGACGAGGTCTTCGACGGGAGTTACAGTCCACC
ACCGTCGGACCCGCGCTTCTCCACCGTCACGAGGATGGAGCTCACCAAGT
CCGTGCACACCCCGGGCTACGCCATCCGGCGGCCGAAGGAGGGCTTCGAC
CGCCTCAACGCAAACCGCACCAACTACTCGCTCGGCCAGCACCCGACGAC
GGAGCTCAAGACCGCCACGGCGGAGCTCCAGATGAAGCATCCTCGCGACC
AGCCACGCGTGGACCAGCCTGCTGTGGGGGGATCGACGCTCCGGAACGGG
TCCTACCGCCTCGACACGTCCGCGAGGGACAGCGTTCGGCGCGGGGGCGG
CGGCGGAGAGGGGGTGCTCGGGGTGCGGTTCGATCTGATCAACGGGCGGG
AGGACGAGGGCGCTAGGGGGAAGGTCGCCATGCGAACGGGGCCGCGGCGG
ACGCTGAACAACGCGGAGAAGGAGGTGCTTCATCCGACGGACGGTTGGGG
GGACGTGCCCGGGGGGATGTACGTCGACATCTTGACGGGGAAGGACAGGC
GGAAGTTCGACGTGCCAGAGCGAGGGGCTGGGGCTCCCGTCAGGAGTGAT
ACCGTTTCGGGGAGGACGCGCCCTTGGTAG
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