prot_Ecto-sp6_S_contig87.17813.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp6_S_contig87.17813.1
Unique Nameprot_Ecto-sp6_S_contig87.17813.1
Typepolypeptide
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length833
Homology
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BLAST of mRNA_Ecto-sp6_S_contig87.17813.1 vs. uniprot
Match: D7FZB2_ECTSI (RanBP2-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZB2_ECTSI)

HSP 1 Score: 1073 bits (2776), Expect = 0.000e+0
Identity = 776/833 (93.16%), Postives = 783/833 (94.00%), Query Frame = 0 
Query:    1 MAFVTPSAWFETAVPYRGVLQQPLSPATSTATXXXXXXXXXXXXXXXXXXX-CPAAPAELRKIRPSGARRVAGARAPXXXXXXXXXXXXXXXXXXXXXXXXXXNQRRPPSVGTGQEAHPTPXXXXRARRVAGIRKASVTNGPKLGGWRCPACGAQLYRQQEECSLCQTPRPVAGAAGDDGGYVKRPGGKRHARADVRSREFTNKIRGMPAGDWRGVVRELEEEERLEEADSQLQLQQGXXXXXXXXXXEAAKSLGAPSVHGYHAVMQRLEECGRWREAAAVLRQMHRKLGPRAGDVPTLSAACLHKAMSACFAAEQWGTCSDLLEEARGWATEASYRSFKLAIEACVRGGRWERGLSVLMERTSEKTDRKWEALPFNRVMXXXXXXXXXXXXXXLLAHMKDEVGAEPDLVTYGIAINSYGNAGEWRRALGVLKESLPEMRTGGGASRENACLCFAYAXXXXXXXXXXXXXXXXXXXDVPATGVVPNALVVHEALTACGVGGLWQQALELLPRALAVADGKPSSCLRSYTAAIKXXXXXXXXXXXXXXFRRGQRDGLQPDEVCYAEVMSACAGAGCADETLGLLREMPAAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTVGLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAPGLPAPDATSYNTAITACESAGRFEEAVGLFRAMERIGVAXXXXXXXXXXXXXXXXXXXXXXLALLGEVRSRATAAEPXXXXXXXXXXXXXXXXXXXXXVSVFRLMLADGLVPTDRAWSAVISACEAAAGVPGRGDDERVRAVMALLVRAREDTGVDRPDDGGGHTPDSEQKE 832
            MAFVTPSAWFETAVPYRGVLQQPLSPATSTAT                    CPAAPAELRK R SGARRVAGARA XXXXXXXXXXXXXXXXXXXXXXXXXX    PP+ GTGQ+AHPTPXXXX ARR AGIRKASVTNGPKLGGWRCPACGAQLYRQQEECSLCQTPRPVAGAAGDDGGYVKRPGGKRH RADVRSREFTNKIRGMPAGDWRGVVRELEEEERLEEADSQL     XXXXXXXXXX AAKSLGAPSVHGYHAVMQRLEECGRWREAAAVLR+MHRKLGPRAGDVPTLSAACLHKAMSACFAAEQWGTCSDLLEEARGWATEASYRSFKLAIEACVRGGRWERGLSVLMERTSEKTDRKWE LPFNRVMXXXXXXXXXXX   LL HMKDEVGAEPDLVTYGIAIN+YGNAGEWRRALGVLKESLPEMRTGGGAS ENACLCFAY XXXXXXXXXXXXXXXXXXXDVPATGVVPNALV+HEALTACGVGG WQQALELLPRALAVADGKPSSCLRSYTAAI XXXXXXXXXXXXXXFRRGQRDGLQPDEVCYAEVMSACAG GCADETLGLLREMPAAA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTVGLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAPGLPAPDATSYNTAITACESAGRFEEAVGLFRAMERIGVAXXXXXXXXXXXXXXXXXXXXXX ALLGEVRSRATAAEPXXXXXXXXXXXXXXXXXXXXXVSVFRLMLAD LVPTDRAWSAVISACEAAAGVPGRGDDERVRAVMALLVRARE+TGVDRPDDGGGHTPDSE+KE
Sbjct:    1 MAFVTPSAWFETAVPYRGVLQQPLSPATSTATTSRRSRRPSSLIASASASATCPAAPAELRKERTSGARRVAGARAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPTAGTGQQAHPTPXXXXXARRAAGIRKASVTNGPKLGGWRCPACGAQLYRQQEECSLCQTPRPVAGAAGDDGGYVKRPGGKRHTRADVRSREFTNKIRGMPAGDWRGVVRELEEEERLEEADSQLXXX-XXXXXXXXXXXXAAKSLGAPSVHGYHAVMQRLEECGRWREAAAVLRRMHRKLGPRAGDVPTLSAACLHKAMSACFAAEQWGTCSDLLEEARGWATEASYRSFKLAIEACVRGGRWERGLSVLMERTSEKTDRKWEVLPFNRVMXXXXXXXXXXXAVALLDHMKDEVGAEPDLVTYGIAINAYGNAGEWRRALGVLKESLPEMRTGGGASCENACLCFAYXXXXXXXXXXXXXXXXXXXXDVPATGVVPNALVLHEALTACGVGGRWQQALELLPRALAVADGKPSSCLRSYTAAIXXXXXXXXXXXXXXXFRRGQRDGLQPDEVCYAEVMSACAGGGCADETLGLLREMPAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTVGLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAPGLPAPDATSYNTAITACESAGRFEEAVGLFRAMERIGVAXXXXXXXXXXXXXXXXXXXXXXXALLGEVRSRATAAEPXXXXXXXXXXXXXXXXXXXXXVSVFRLMLADSLVPTDRAWSAVISACEAAAGVPGRGDDERVRAVMALLVRAREETGVDRPDDGGGHTPDSERKE 832
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig87.17813.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZB2_ECTSI0.000e+093.16RanBP2-type domain-containing protein n=2 Tax=Ecto... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 741..773
e-value: 1.6E-5
score: 22.8
coord: 526..559
e-value: 3.2E-6
score: 25.0
coord: 375..407
e-value: 0.002
score: 16.2
coord: 669..702
e-value: 8.9E-5
score: 20.4
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 526..554
e-value: 1.2E-4
score: 22.1
coord: 409..433
e-value: 0.037
score: 14.3
coord: 375..400
e-value: 0.1
score: 12.9
coord: 597..625
e-value: 0.068
score: 13.4
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 736..784
e-value: 0.0068
score: 16.5
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 665..713
e-value: 2.3E-8
score: 34.1
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 558..588
score: 7.388
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 629..663
score: 7.114
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 334..365
score: 5.919
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 523..557
score: 10.786
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 449..484
score: 7.081
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 594..628
score: 9.602
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 257..287
score: 7.794
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 407..437
score: 7.585
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 666..700
score: 12.036
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 371..401
score: 8.068
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 738..772
score: 10.567
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 701..735
score: 8.901
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 301..477
e-value: 1.0E-21
score: 79.6
coord: 661..818
e-value: 1.4E-32
score: 115.3
coord: 489..660
e-value: 1.2E-35
score: 125.3
NoneNo IPR availableGENE3D4.10.1060.10coord: 137..177
e-value: 2.4E-5
score: 25.4
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 456..657
coord: 527..781
coord: 275..505
IPR001876Zinc finger, RanBP2-typePROSITEPS50199ZF_RANBP2_2coord: 142..171
score: 8.931

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig87contigEcto-sp6_S_contig87:348410..351552 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig87.17813.1mRNA_Ecto-sp6_S_contig87.17813.1Ectocarpus species6 EcLAC_371mRNAEcto-sp6_S_contig87 348410..352521 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp6_S_contig87.17813.1 ID=prot_Ecto-sp6_S_contig87.17813.1|Name=mRNA_Ecto-sp6_S_contig87.17813.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=833bp
MAFVTPSAWFETAVPYRGVLQQPLSPATSTATTSRRSRRPSSVASASASA
TCPAAPAELRKIRPSGARRVAGARAPPPPPVAAGDLAKKQQQPPLARPPP
RTNQRRPPSVGTGQEAHPTPTPRPRARRVAGIRKASVTNGPKLGGWRCPA
CGAQLYRQQEECSLCQTPRPVAGAAGDDGGYVKRPGGKRHARADVRSREF
TNKIRGMPAGDWRGVVRELEEEERLEEADSQLQLQQGGGEVGGGGDDEAA
KSLGAPSVHGYHAVMQRLEECGRWREAAAVLRQMHRKLGPRAGDVPTLSA
ACLHKAMSACFAAEQWGTCSDLLEEARGWATEASYRSFKLAIEACVRGGR
WERGLSVLMERTSEKTDRKWEALPFNRVMQACVDAGRWQEAVALLAHMKD
EVGAEPDLVTYGIAINSYGNAGEWRRALGVLKESLPEMRTGGGASRENAC
LCFAYAIRACKHAGEFDEALGVLDRDVPATGVVPNALVVHEALTACGVGG
LWQQALELLPRALAVADGKPSSCLRSYTAAIKACGRAGQWEDALALFRRG
QRDGLQPDEVCYAEVMSACAGAGCADETLGLLREMPAAAGLRPTVPCYNA
AIVACGAGGDWRRSVELLEEMPTVGLAPGVSTCNMAINALRRGGQCQRIL
DLLERMSTAPGLPAPDATSYNTAITACESAGRFEEAVGLFRAMERIGVAP
DVVGYTATIQALGRCRRWEEALALLGEVRSRATAAEPNVRTYVAAVHAAG
HAGQWERAVSVFRLMLADGLVPTDRAWSAVISACEAAAGVPGRGDDERVR
AVMALLVRAREDTGVDRPDDGGGHTPDSEQKE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
IPR001876Znf_RanBP2