mRNA_Ecto-sp6_S_contig8.17047.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig8.17047.1
Unique NamemRNA_Ecto-sp6_S_contig8.17047.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig8.17047.1 vs. uniprot
Match: D7G4Z5_ECTSI (Dynein light chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4Z5_ECTSI)

HSP 1 Score: 188 bits (478), Expect = 1.040e-60
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 
Query:    1 MESSGVSAKMVSDMDDHGEMRVDAQNWAAAAIESKSDEKEISRAIKSKFEVKYGPTWHCIVGTDFKAFVTHESKHFVFFYHGKMAFCLYKAG 276
            MESSGVSAKMVSDMDDHGEMRVDAQNWAAAAIESKSDEKEISRAIKSKFEVKYGPTWHCIVGTDFKAFVTHESKHFVFFYHGKMAFCLYKAG
Sbjct:    1 MESSGVSAKMVSDMDDHGEMRVDAQNWAAAAIESKSDEKEISRAIKSKFEVKYGPTWHCIVGTDFKAFVTHESKHFVFFYHGKMAFCLYKAG 92
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BLAST of mRNA_Ecto-sp6_S_contig8.17047.1 vs. uniprot
Match: A0A835YST4_9STRA (Dynein light chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YST4_9STRA)

HSP 1 Score: 145 bits (365), Expect = 1.810e-43
Identity = 68/92 (73.91%), Postives = 79/92 (85.87%), Query Frame = 1 
Query:    1 MESSGVSAKMVSDMDDHGEMRVDAQNWAAAAIESKSDEKEISRAIKSKFEVKYGPTWHCIVGTDFKAFVTHESKHFVFFYHGKMAFCLYKAG 276
            ME+SG S+ +VSDMDDH EMR DAQ WAAAAIES ++EK IS+ IK + + KYGPTWHCIVGTDFKA+VTHE+K F+FFYHGKMA CLYKAG
Sbjct:    1 MENSGASSSVVSDMDDHSEMRTDAQAWAAAAIESHAEEKAISKDIKGRMDDKYGPTWHCIVGTDFKAYVTHETKTFMFFYHGKMAICLYKAG 92
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BLAST of mRNA_Ecto-sp6_S_contig8.17047.1 vs. uniprot
Match: A0A7S2V5R3_9STRA (Dynein light chain (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5R3_9STRA)

HSP 1 Score: 134 bits (336), Expect = 1.550e-38
Identity = 65/93 (69.89%), Postives = 77/93 (82.80%), Query Frame = 1 
Query:    1 MESSGVS-AKMVSDMDDHGEMRVDAQNWAAAAIESKSDEKEISRAIKSKFEVKYGPTWHCIVGTDFKAFVTHESKHFVFFYHGKMAFCLYKAG 276
            MES G    K+V DMD+HGEM+ DA+N AAAA+E   +EK+ISR IK+ F+ KYGPTWHCIVGTDF+AFVTHESKHF+FFY GK+A CLYKAG
Sbjct:   39 MESRGSGEGKLVCDMDEHGEMKNDAKNVAAAAVEQHQEEKDISRHIKAHFDQKYGPTWHCIVGTDFRAFVTHESKHFIFFYIGKIAICLYKAG 131
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BLAST of mRNA_Ecto-sp6_S_contig8.17047.1 vs. uniprot
Match: A0A7S2CIH5_9STRA (Dynein light chain n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CIH5_9STRA)

HSP 1 Score: 125 bits (315), Expect = 1.550e-35
Identity = 59/86 (68.60%), Postives = 70/86 (81.40%), Query Frame = 1 
Query:   19 SAKMVSDMDDHGEMRVDAQNWAAAAIESKSDEKEISRAIKSKFEVKYGPTWHCIVGTDFKAFVTHESKHFVFFYHGKMAFCLYKAG 276
            S+K+V DMD+HGEM+ DA   A  AIE  ++EK IS +IKS F+ KYGPTWHCIVG+DF+AFVTHESKHF+FFY GK A CLYKAG
Sbjct:   31 SSKIVCDMDEHGEMKADAHTVAGEAIEKFTEEKAISTSIKSFFDAKYGPTWHCIVGSDFRAFVTHESKHFIFFYIGKTAICLYKAG 116
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BLAST of mRNA_Ecto-sp6_S_contig8.17047.1 vs. uniprot
Match: A0A7S0SUZ6_9STRA (Dynein light chain n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SUZ6_9STRA)

HSP 1 Score: 119 bits (298), Expect = 3.860e-33
Identity = 59/92 (64.13%), Postives = 73/92 (79.35%), Query Frame = 1 
Query:    7 SSGVSAKMVSDMDDHG---EMRVDAQNWAAAAIESKSDEKEISRAIKSKFEVKYGPTWHCIVGTDFKAFVTHESKHFVFFYHGKMAFCLYKA 273
            SSG  +KMV DM+DHG   EM+ DA + A+ A+E+  +EK+ISR IKS F+ KYGPTWHCIVG+DF+AFVT+ESKHF+FFY GK A CLYK 
Sbjct:   10 SSGPHSKMVCDMEDHGIHGEMKNDALSVASTALEANQEEKDISRHIKSFFDQKYGPTWHCIVGSDFRAFVTYESKHFIFFYIGKTAICLYKT 101
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BLAST of mRNA_Ecto-sp6_S_contig8.17047.1 vs. uniprot
Match: F0XW00_AURAN (Dynein light chain (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XW00_AURAN)

HSP 1 Score: 108 bits (271), Expect = 2.580e-29
Identity = 49/78 (62.82%), Postives = 61/78 (78.21%), Query Frame = 1 
Query:   43 DDHGEMRVDAQNWAAAAIESKSDEKEISRAIKSKFEVKYGPTWHCIVGTDFKAFVTHESKHFVFFYHGKMAFCLYKAG 276
            D+HGEM+ +  N AA AIE    E E+S+ IK+ F+ KYGPTWHCIVG+DF+A+VTHESK+F+FFY GK A CLYK G
Sbjct:    1 DEHGEMKQEVYNLAAYAIEQYVTEMEVSKHIKAHFDQKYGPTWHCIVGSDFRAYVTHESKNFIFFYQGKTAICLYKCG 78
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BLAST of mRNA_Ecto-sp6_S_contig8.17047.1 vs. uniprot
Match: A0A482SJR4_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SJR4_9ARCH)

HSP 1 Score: 105 bits (261), Expect = 7.300e-28
Identity = 47/72 (65.28%), Postives = 60/72 (83.33%), Query Frame = 1 
Query:   58 MRVDAQNWAAAAIESKSDEKEISRAIKSKFEVKYGPTWHCIVGTDFKAFVTHESKHFVFFYHGKMAFCLYKA 273
            M+ DA    AAA+E+ ++EK+IS+ +K+ F+ KYGPTWHCIVG+DF+AFVTHESKHF+FFY GK A CLYKA
Sbjct:    1 MKHDAFTVVAAALETNTEEKDISKHVKTYFDQKYGPTWHCIVGSDFRAFVTHESKHFIFFYIGKTAICLYKA 72
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BLAST of mRNA_Ecto-sp6_S_contig8.17047.1 vs. uniprot
Match: A0A8J2SHI5_9STRA ([Phosphatase 2A protein]-leucine-carboxy methyltransferase n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SHI5_9STRA)

HSP 1 Score: 107 bits (266), Expect = 1.220e-25
Identity = 49/79 (62.03%), Postives = 61/79 (77.22%), Query Frame = 1 
Query:   40 MDDHGEMRVDAQNWAAAAIESKSDEKEISRAIKSKFEVKYGPTWHCIVGTDFKAFVTHESKHFVFFYHGKMAFCLYKAG 276
            +D+HGEM+ +A N AA A+E    E EIS+ IK++F+ KYGPTWHCIVG+DFK   THE+KHF+FFYHGK A  LYK G
Sbjct:  300 VDEHGEMKQEAYNLAAYAVEQFVTEMEISKHIKAQFDEKYGPTWHCIVGSDFKLQCTHEAKHFIFFYHGKTAVALYKCG 378
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BLAST of mRNA_Ecto-sp6_S_contig8.17047.1 vs. uniprot
Match: A0A7S1YV50_9STRA (Dynein light chain n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YV50_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.300e-25
Identity = 49/84 (58.33%), Postives = 60/84 (71.43%), Query Frame = 1 
Query:   25 KMVSDMDDHGEMRVDAQNWAAAAIESKSDEKEISRAIKSKFEVKYGPTWHCIVGTDFKAFVTHESKHFVFFYHGKMAFCLYKAG 276
            K + DMD+H EM+ DA + A  AIES   EK+ +  IK  F+ KYGPTWH IVG+DFKA+ THE+K F FFY GK A C+YKAG
Sbjct:   36 KQICDMDEHSEMKSDAISVATNAIESHIQEKDQANHIKRAFDAKYGPTWHVIVGSDFKAYGTHEAKTFFFFYVGKAAICMYKAG 119
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BLAST of mRNA_Ecto-sp6_S_contig8.17047.1 vs. uniprot
Match: A0A0R3UCN8_MESCO (Dynein light chain n=1 Tax=Mesocestoides corti TaxID=53468 RepID=A0A0R3UCN8_MESCO)

HSP 1 Score: 94.0 bits (232), Expect = 4.380e-23
Identity = 48/91 (52.75%), Postives = 69/91 (75.82%), Query Frame = 1 
Query:   13 GVSAKMV---SDMDDHGEMRVDAQNWAAAAIESKSDEKEISRAIKSKFEVKYGPTWHCIVGTDFKAFVTHESKHFVFFYHGKMAFCLYKAG 276
            G S K V   +DM D  EM+ DA + A+ A+++++ EK+I+ AIK KF+ KYGPTWHCIVG +F ++VTHESKHF++FY G++A  L+K+G
Sbjct:   14 GQSQKAVVKNADMSD--EMQHDAVDCASEAMQNQTIEKDIAAAIKKKFDSKYGPTWHCIVGRNFGSYVTHESKHFIYFYMGQVAILLFKSG 102
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig8.17047.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4Z5_ECTSI1.040e-60100.00Dynein light chain n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A835YST4_9STRA1.810e-4373.91Dynein light chain n=1 Tax=Tribonema minus TaxID=3... [more]
A0A7S2V5R3_9STRA1.550e-3869.89Dynein light chain (Fragment) n=1 Tax=Fibrocapsa j... [more]
A0A7S2CIH5_9STRA1.550e-3568.60Dynein light chain n=1 Tax=Florenciella parvula Ta... [more]
A0A7S0SUZ6_9STRA3.860e-3364.13Dynein light chain n=1 Tax=Chromulina nebulosa Tax... [more]
F0XW00_AURAN2.580e-2962.82Dynein light chain (Fragment) n=1 Tax=Aureococcus ... [more]
A0A482SJR4_9ARCH7.300e-2865.28Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A8J2SHI5_9STRA1.220e-2562.03[Phosphatase 2A protein]-leucine-carboxy methyltra... [more]
A0A7S1YV50_9STRA1.300e-2558.33Dynein light chain n=1 Tax=Ditylum brightwellii Ta... [more]
A0A0R3UCN8_MESCO4.380e-2352.75Dynein light chain n=1 Tax=Mesocestoides corti Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig8contigEcto-sp6_S_contig8:1126311..1128351 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score192.2
Seed ortholog evalue1.1e-46
Seed eggNOG ortholog2880.D7G4Z5
Model size279
KEGG koko:K10418
KEGG Pathwayko04962,map04962
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.positive regulation of ATP-dependent microtubule motor activity, plus-end-directed
EggNOG OGsKOG3430@1,KOG3430@2759
Ec32 ortholog descriptionDynein light chain, type 1/2
Ec32 orthologEc-19_003050.1
Cds size279
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350413.2772148-CDS-Ecto-sp6_S_contig8:1126310..11263501682350413.2772148-CDS-Ecto-sp6_S_contig8:1126310..1126350Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig8 1126311..1126350 +
1682350413.2866085-CDS-Ecto-sp6_S_contig8:1127043..11271411682350413.2866085-CDS-Ecto-sp6_S_contig8:1127043..1127141Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig8 1127044..1127141 +
1682350413.2950854-CDS-Ecto-sp6_S_contig8:1128210..11283511682350413.2950854-CDS-Ecto-sp6_S_contig8:1128210..1128351Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig8 1128211..1128351 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig8.17047.1prot_Ecto-sp6_S_contig8.17047.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig8 1126311..1128351 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig8.17047.1

>prot_Ecto-sp6_S_contig8.17047.1 ID=prot_Ecto-sp6_S_contig8.17047.1|Name=mRNA_Ecto-sp6_S_contig8.17047.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=93bp
MESSGVSAKMVSDMDDHGEMRVDAQNWAAAAIESKSDEKEISRAIKSKFE
VKYGPTWHCIVGTDFKAFVTHESKHFVFFYHGKMAFCLYKAG*
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mRNA from alignment at Ecto-sp6_S_contig8:1126311..1128351+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig8.17047.1 ID=mRNA_Ecto-sp6_S_contig8.17047.1|Name=mRNA_Ecto-sp6_S_contig8.17047.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2041bp|location=Sequence derived from alignment at Ecto-sp6_S_contig8:1126311..1128351+ (Ectocarpus species6 EcLAC_371)
ATGGAGAGCTCGGGTGTCTCAGCGAAGATGGTATCTGACAGTAAGTGCCC
TCTTTTCGTGTCCGTTCTACTACGCTACCAACAATACTGAACAATATATC
TTACTGCTCACGGATCGGGCAGATTCATTTAGACTAGTCTACACATCTGC
TGTCGATCCTCTTTTCATATGCACAAGTCCAGTGCAAACAACGTTCTGGA
AGATGCACGTCAGGCCAACAACGGTGTAAGTCTGCTTGCGATCATTGTTG
ATATCGGTTTGAGTGTTGATGTGGAGGCCTTGTCGGTATGGTAGCGTGGG
TCCGCTGTCGACTCTCAGACAAATTATGTACAGTGTTCACGCCAATAGCG
GCGCCATTGCTGTGCCCGTGTGTTCTCCTACATATGCCTTGCTTGGTCAC
ACAATGAAGTTGAACTCACCAAACACCTTCGTACCTGCACAACCCATGCG
ATCTAGGGGTTCTAGAAAGTTTTGGACGTTCCTGATATACCCATCTGTCG
TGTATTTCAGAGATGGTTTTTGAATTTTTCGGCGTCAAAGAGGGATCACC
TTCCTCCGACTGACAAAAGGCGAGGTTCTTACGTACAATATCGTGTGCAA
TGCGAAGCACAGTCCTTTGGTAGGCACGAGTGTTCGAAAAAAGGACACCA
TCTTGACAGCGTAGTAAAATACCCTTCAATCTTACGGCCTTCGAGACTAT
CTTCTTATACCCACACGTTCGTTTTGCCAACAGTGGATGACCATGGCGAG
ATGCGAGTCGACGCACAGAACTGGGCAGCAGCAGCGATAGAGAGCAAAAG
CGACGAAAAGGAGATATCAAGAGCTATAAAGGTGTGCACCGTATCTACGA
CCGAAGTATCGCAGTCTCCTCTCACTACTGCTGTCGACGCAAGCGGCTCC
GGATGATCAGCTACCTGCGAAAATCATTCGCCGAGAAGACAGGAGTATTC
GTTCGGAACTTACTCATTGGAGGGTGGCTCCACTCGTGGGGTTCGTCTGA
ACATCTGCTCACTCTTCATCCCCTGACACCAGCAACAGCACAGTATCAAC
GACCGATCGACATGCATCGTAGATAGTAGGTGCCACTGGCATAGTTTGTT
GTAGCGTAACCACATGCTTTGGCAGCCAACTTTTGGATTTCAACAATCTG
ATGACGAGCTTCAATTTCAACGTACGGGTGAACAAGGTAAAAATTCCTCC
TATGAGCACGTCATGTGGGGTGCTACACAGCTAGACAAGCGGGGGCTTCT
CAGAAAGAAAGAAACAGAATGTTGCAACATGTGACGCATATGGTGAAGAA
AATTGCTGGTTCGACACTAATTCTCTGTTGAATCCTAAATGGCCAGGCGA
GGAAGAGATTAGGAGGGGAGGGAGACAGGGAGAGAGAGGGGGGGAAGGAG
AAATGAAGATGGTTCATTTCTAAGGAAATAACGGTCGCTGTACTCACTTG
GATATAAGTGCTAGGCCCAAAACGCTAACAAGGAAGAAGCGAACATGTTG
ACAACATAGAATCAACGACCTATACTGTTGGCCGTATTTCTCGCAGGGTT
CAGAAGGTTAGCTGGGCCTTTGGAAGGTATGTGGTAAAATGTCCACAGGA
CTAACAGCACGCGGGCGCCCCTCACCTCCGCTCAATGCGGGTCTCGACAT
GGAAACTACACTTGATGTTATGTGGCATCGACGTGTACACCTTCCCAGAG
CAGTTCAGTCTCACGTCACAGCAGCCGTATCTGTGGAGTTACTTATCCAA
GGGTCCTAGGGCACTGTCAAGTGGCCTCTACATAGTCTATTGTCCAAATC
CTTTCAAAGAGGTGGGTACACCTTGCCTATGCGTATTGGTTTCTTGGCCG
TTTTCTTGAACGCTCGTCGTCCCGCACTCGTTCAAAACCCCTTTTGACAG
TCGAAGTTCGAGGTCAAGTACGGCCCAACATGGCACTGTATCGTTGGCAC
GGACTTCAAAGCTTTCGTCACGCACGAGAGCAAGCACTTCGTTTTCTTCT
ACCACGGGAAGATGGCGTTCTGTCTGTATAAAGCCGGATAG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig8:1126311..1128351+

>mRNA_Ecto-sp6_S_contig8.17047.1 ID=mRNA_Ecto-sp6_S_contig8.17047.1|Name=mRNA_Ecto-sp6_S_contig8.17047.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=279bp|location=Sequence derived from alignment at Ecto-sp6_S_contig8:1126311..1128351+ (Ectocarpus species6 EcLAC_371)
ATGGAGAGCTCGGGTGTCTCAGCGAAGATGGTATCTGACATGGATGACCA
TGGCGAGATGCGAGTCGACGCACAGAACTGGGCAGCAGCAGCGATAGAGA
GCAAAAGCGACGAAAAGGAGATATCAAGAGCTATAAAGTCGAAGTTCGAG
GTCAAGTACGGCCCAACATGGCACTGTATCGTTGGCACGGACTTCAAAGC
TTTCGTCACGCACGAGAGCAAGCACTTCGTTTTCTTCTACCACGGGAAGA
TGGCGTTCTGTCTGTATAAAGCCGGATAG
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