mRNA_Ecto-sp6_S_contig110.1478.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig110.1478.1
Unique NamemRNA_Ecto-sp6_S_contig110.1478.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig110.1478.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig110contigEcto-sp6_S_contig110:233385..234489 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size401
Hectar predicted targeting categoryother localisation
Exons2
Cds size207
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348800.214205-CDS-Ecto-sp6_S_contig110:233384..2334561682348800.214205-CDS-Ecto-sp6_S_contig110:233384..233456Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig110 233385..233456 -
1682348800.2239435-CDS-Ecto-sp6_S_contig110:234160..2342951682348800.2239435-CDS-Ecto-sp6_S_contig110:234160..234295Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig110 234161..234295 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348800.2336743-UTR-Ecto-sp6_S_contig110:234295..2344891682348800.2336743-UTR-Ecto-sp6_S_contig110:234295..234489Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig110 234296..234489 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig110.1478.1prot_Ecto-sp6_S_contig110.1478.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig110 233385..234295 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig110.1478.1

>prot_Ecto-sp6_S_contig110.1478.1 ID=prot_Ecto-sp6_S_contig110.1478.1|Name=mRNA_Ecto-sp6_S_contig110.1478.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=69bp
MTLFKSGFPRRWCHQAGGGIHVTSRKPRRPCCRRRVGSHHHSAPLYKLSG
DGGSDDVSPNTPEHLLQNR
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mRNA from alignment at Ecto-sp6_S_contig110:233385..234489-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig110.1478.1 ID=mRNA_Ecto-sp6_S_contig110.1478.1|Name=mRNA_Ecto-sp6_S_contig110.1478.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1105bp|location=Sequence derived from alignment at Ecto-sp6_S_contig110:233385..234489- (Ectocarpus species6 EcLAC_371)
ATGCTTGTTCGTGTGTTTTGTCCCTGCGGCAACTGCACAAGACGGGACCG
CCGTGTTGATACCGTGACTGCACAGAAATACACCATATGCCGAGTATATT
GTAGTCCAGTTTCTCTCCAAAACTCTTACCGATCGTCGGCAGGTGCGCGC
GACCTCTTTTGCCGTTTTCTCTGCCGTGCTTGCTCCAGGACAATATGACC
TTATTCAAAAGTGGATTTCCCCGTAGGTGGTGTCATCAAGCTGGTGGTGG
TATCCATGTAACAAGCAGGAAACCTCGACGCCCCTGCTGTCGACGACGGG
TGGGGTCACATCACCACTCCGCTCCACTAGTAAGTGCTGTTTCGCTTTGG
AGTCCAAATTCTGTCGATTCACGTACGTGCGCTAATCGTGCATAACGCCG
CGTGCTGTTCGATTGTCTCATTCAGCTTGTTGACTCCAGGGGAGCGCCAT
GTCTACCTTGTGTTCCGTTTGAAAATGAAGACTAGTAGAACTACATGCCC
AAGAGATTCGTCGCTGATCATGTGTCCACGGCTGTATCCCACGGGTACCC
GTGACTTTTATTGGCTAGTAGGTGTCATGTCAACAAAACACCTATCTATC
CAGATTCGCACTACACGCACGCGGCTTCAGGCAGGATTCTCCCCGTATTT
TTTGTCGTTGCCGACGCACACGGAACCGCACAGGCGTACATTGATACCCC
GCATCTACCCTAACACGTCTCGCACGCACACGGGAGATGCAGCAGCTGCC
GCGGCTATACTTCGGTGTGCAAGCATCTTGGTGGCACGCCCGCGCCTCCC
ACGACCGGCGTTTATGTTTTCGGCCTTGTTCAAGGACTACAGCAATACTA
TCATCTTCCAAGTCTCGAGACACGAAGTACGTGCCTGCTCGTGTTTCGTT
ACCCCGTTTCTTCATCCACAGCAGAGCCAGCATGAACCTAACCCACCCGC
AGATTTGCTTTCGAAAGGCCTGCCACGGACGCTAAACCTGACCGTTGTCC
GTTTCGCGTGTGTTCAAACTCGCCGACGTACAGTACAAATTGTCGGGAGA
CGGTGGTTCGGATGATGTGTCCCCGAACACTCCTGAACACCTACTACAGA
ACCGT
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig110:233385..234489-

>mRNA_Ecto-sp6_S_contig110.1478.1 ID=mRNA_Ecto-sp6_S_contig110.1478.1|Name=mRNA_Ecto-sp6_S_contig110.1478.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=207bp|location=Sequence derived from alignment at Ecto-sp6_S_contig110:233385..234489- (Ectocarpus species6 EcLAC_371)
ATGACCTTATTCAAAAGTGGATTTCCCCGTAGGTGGTGTCATCAAGCTGG
TGGTGGTATCCATGTAACAAGCAGGAAACCTCGACGCCCCTGCTGTCGAC
GACGGGTGGGGTCACATCACCACTCCGCTCCACTATACAAATTGTCGGGA
GACGGTGGTTCGGATGATGTGTCCCCGAACACTCCTGAACACCTACTACA
GAACCGT
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