mRNA_Ecto-sp6_S_contig11.1266.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig11.1266.1
Unique NamemRNA_Ecto-sp6_S_contig11.1266.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig11.1266.1 vs. uniprot
Match: D8LAW5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAW5_ECTSI)

HSP 1 Score: 353 bits (905), Expect = 3.590e-123
Identity = 170/173 (98.27%), Postives = 172/173 (99.42%), Query Frame = 1 
Query:    1 QDDFAWQVIVVQTRRDHTGITKQQELPLQITITYGDEKVSTPLVRARQPLWNFWTQLPDKGGSEGMVFSLVGRDSATGKISVEGEARLDLSKFRRSGQSFELWETLHPTKARGVLPMVVKPARPADSTAEVHLTITYCPNTQKKDIPDGEDTDCLMCATFATFGLSRGSCSIS 519
            +DDFAWQVIVVQTRRDHTGITKQQELPLQITITYGDEKVSTPLVRARQPLWNFWTQLPDKGGSEGMVFSLVGRDS+TGKISVEGEARLDLSKFRRSGQSFELWETLHPTKARGVLPMVVK ARPADSTAEVHLTITYCPNTQKKDIPDGEDTDCLMCATFATFGLSRGSCSIS
Sbjct:    4 EDDFAWQVIVVQTRRDHTGITKQQELPLQITITYGDEKVSTPLVRARQPLWNFWTQLPDKGGSEGMVFSLVGRDSSTGKISVEGEARLDLSKFRRSGQSFELWETLHPTKARGVLPMVVKSARPADSTAEVHLTITYCPNTQKKDIPDGEDTDCLMCATFATFGLSRGSCSIS 176
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig11.1266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LAW5_ECTSI3.590e-12398.27Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig11contigEcto-sp6_S_contig11:879585..882371 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size522
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_006190.1
Cds size522
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348781.1911287-CDS-Ecto-sp6_S_contig11:879584..8796561682348781.1911287-CDS-Ecto-sp6_S_contig11:879584..879656Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig11 879585..879656 +
1682348781.199028-CDS-Ecto-sp6_S_contig11:880532..8806991682348781.199028-CDS-Ecto-sp6_S_contig11:880532..880699Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig11 880533..880699 +
1682348781.2069137-CDS-Ecto-sp6_S_contig11:881282..8814751682348781.2069137-CDS-Ecto-sp6_S_contig11:881282..881475Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig11 881283..881475 +
1682348781.215317-CDS-Ecto-sp6_S_contig11:882281..8823711682348781.215317-CDS-Ecto-sp6_S_contig11:882281..882371Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig11 882282..882371 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig11.1266.1prot_Ecto-sp6_S_contig11.1266.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig11 879585..882371 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig11.1266.1

>prot_Ecto-sp6_S_contig11.1266.1 ID=prot_Ecto-sp6_S_contig11.1266.1|Name=mRNA_Ecto-sp6_S_contig11.1266.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=174bp
QDDFAWQVIVVQTRRDHTGITKQQELPLQITITYGDEKVSTPLVRARQPL
WNFWTQLPDKGGSEGMVFSLVGRDSATGKISVEGEARLDLSKFRRSGQSF
ELWETLHPTKARGVLPMVVKPARPADSTAEVHLTITYCPNTQKKDIPDGE
DTDCLMCATFATFGLSRGSCSIS*
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mRNA from alignment at Ecto-sp6_S_contig11:879585..882371+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig11.1266.1 ID=mRNA_Ecto-sp6_S_contig11.1266.1|Name=mRNA_Ecto-sp6_S_contig11.1266.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2787bp|location=Sequence derived from alignment at Ecto-sp6_S_contig11:879585..882371+ (Ectocarpus species6 EcLAC_371)
CAGGATGATTTCGCGTGGCAAGTTATCGTCGTGCAGACTCGAAGAGACCA
CACGGGGATCACCAAACAACAGGTAGGCTGAAAACGAGCACCAGCCAACT
GTATACATCGTCCTCTTTCAATCGCCTTGACGTAAGTACCATGTGATTAC
TACGGAGTATTGGAGGTGCCGCGGCGAGGTATCCGGGGGGCGGGGGGGGG
TTGACATTGCCCCTCGTCCAGAGACGGATCCTATCGAGAGATTGTAATTT
TGCGAGCAGTTGCAAAGGATACCAACGCCCTCTTCCTATGTTTTTGTTAG
AACCGCAGGTGTTTCACCCTCCATAGAGCATGAGTTCCGTGCCCGCTCAC
TGATCTGCTTTCATGCTCTCTCCAATAATGGGTTTGGAAACCCGTCGTGT
CGAGGTGCAGACGACGACACCGCCCCCTCAATGCCCCGTGTGTACAGTCC
ATTGGCATACCTCCGATAACAAGTAGAGCACCCGCTCCCCCTCTTTCCTT
TGTGTAACATAGCACGAAACTAGGCGACCATGGGGGAAACGAAGGCCCCA
AGGAAAAGCACGAGCGTGCAGAAAAGGCACCCGCCAAGCACAATGCGGTT
GCAAAACAACGCCTCCCTCGACCCGAGCCGTGTGCCACCTTTCGCTGCAA
TATGTACTCCCCAAACCTGAAAAATAAAAAGCACCCGAAACAAAAACACA
ACCAACACCCCTAATTCGCATCTCCTCCCCCCAGCCTGGTCCGGTGAAGA
GCCTGGTCCGGTGAGAACCCGGCGTGCTCCGTCCCGGCTTTGTAGGGATG
CGAGGTCAATGGTCTAATGACTACGACATGCACGACTATGAGTACCCCCC
CCCATTGATAACTTTACACCTTCCCTTGCTTATGTGTCGACGCGCTAATT
GCCTTTTTTCTCGGAACAAACCCTCCTGCCGCCGCCTGCCGCACTCAGGA
GCTACCGCTCCAGATCACCATCACCTACGGAGACGAGAAGGTTTCTACCC
CTCTGGTGCGAGCGAGACAGCCGCTTTGGAACTTCTGGACCCAGCTGCCA
GACAAGGGGGGGTCGGAGGGTATGGTGTTTTCTCTTGTCGGCCGGGACAG
CGCAACTGGGAAAATGTGAGTGCTCCCTGTTGCTCTCTCTCTATATATAT
ATATATATATAGCAGGTGGAGTCATTTCGTGCGGTCTAAATGTGTTGTGT
TAATCAACGGTTTCAAGAATCATCTTTGAAAGCACTCTTGAGATTTTGTG
CGTGGGACTCTGAAGGATTCGGAATTCGTATGGGCTTGTGGTAGAAGAAG
AGGGTAGGCCACGGCGATGGGCCATGAAGCTGAACATCCAGGTTTGGTGA
TTAGTTTTTATATTTAGCACTGCTGTAGTCTAACACCGGTGGGGCGTGAT
GTTCCGGACAGAAGCAAATCACCGAATCTTGAGCGTCGAAATATTGATTC
AATCTCTCAGTTCTCCGGCAACATCATTGGTATGCACAATACAACTGCAT
ACCAAAGAGTATTGAGTCGAAATATTGATAGCAACTTCTCTCCGACCTTC
TTCCTGCTCTCCACTTCCCATCCCGCCTCCGTCCCTCACTCTTGCTCTTC
CCACCTCTCCATCCGCTCCGGCCCGTTGCTTTGTACTCATGAAAACAACC
TACAATAACGCCTCTTTGCTTCCGCTGACGCCCCCCCCCCTCCCCCAGTT
CGGTGGAAGGAGAGGCGAGGCTCGATCTTTCCAAGTTTCGGCGGAGTGGC
CAGAGCTTCGAGCTATGGGAGACGTTGCACCCGACCAAGGCGCGGGGGGT
CTTGCCGATGGTCGTTAAACCCGCCCGCCCGGCTGATTCCACAGCGGAGG
TCCACCTCACCATCACCTACTGCCCGAATACCCAGAAGAAGGTGTGTAAC
ACAATATGGGATTTTCCGTGTGTATCGTGAGAGGATTTATCGTGGGCATC
ATGAGCCGAACCAAAGAACGCCGGAAGCCAGTTAGAGCTCCTCTTCTGGG
TTTTCTAGTATCGGGACCCCGAGCCAAGTGGCTCAGACCTAAGTTGCAGC
CACGGCGTTTTCGGTACGCACGTTTCAGTAGAGATACGTACTACCAGCCT
CGATGTTTCGTTCGCAAATGTTGGTAGACATACTTGCCAGCCTCGGTGTT
TGAGTTCGTAAGTATGTGTCATCAGACATGGTGCAAGCTTAAGCTTCGGT
GTGTCGCTTCGTTCCTGCGGTATGCAAGTGTGCGTCATTCGACGCGAGTG
GACGTATGCATACCGCAGGAGAAAGGGATTGGCGTAAGTAGCAGGCAGTT
ATAGCGCAATAGGCGGCGATGCTATAGCACCGCTGCCGTAGCGATGATGG
TCGAGTAAGTAGCAGGCAATTTTCTACCCGCTGCTGGTGCACAGCCGAGG
ATCGATCGCAGTGAAATACTTCAGATCATTTGTTGCATCTTTGGTAGATG
GACAAGCGACATCTCTGCTAGAGGCAGCCGCCAATCGTCCTCGCTCGTCC
GAAAGTAGTGTTCCCAGTCGGTACGATACGTCGTATGGCCCGTGAGCAAC
GGTTGGAGGTTGTTGTTGCCCCCCCCCCCCCTCCGGCGTTGTACAAGTAG
GGATGCGAGGTAAATGATCTAATGTCTACTACGGCATTCGTTTTCATAAG
TACACCCCCACTCCCCCCCCGCGTGTTCGTTGTTTCGATCTCGGCAGGAT
ATACCCGATGGCGAAGATACGGATTGCCTGATGTGCGCAACGTTTGCAAC
GTTCGGATTATCTCGAGGGTCGTGCTCGATATCGTAA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig11:879585..882371+

>mRNA_Ecto-sp6_S_contig11.1266.1 ID=mRNA_Ecto-sp6_S_contig11.1266.1|Name=mRNA_Ecto-sp6_S_contig11.1266.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=522bp|location=Sequence derived from alignment at Ecto-sp6_S_contig11:879585..882371+ (Ectocarpus species6 EcLAC_371)
CAGGATGATTTCGCGTGGCAAGTTATCGTCGTGCAGACTCGAAGAGACCA
CACGGGGATCACCAAACAACAGGAGCTACCGCTCCAGATCACCATCACCT
ACGGAGACGAGAAGGTTTCTACCCCTCTGGTGCGAGCGAGACAGCCGCTT
TGGAACTTCTGGACCCAGCTGCCAGACAAGGGGGGGTCGGAGGGTATGGT
GTTTTCTCTTGTCGGCCGGGACAGCGCAACTGGGAAAATTTCGGTGGAAG
GAGAGGCGAGGCTCGATCTTTCCAAGTTTCGGCGGAGTGGCCAGAGCTTC
GAGCTATGGGAGACGTTGCACCCGACCAAGGCGCGGGGGGTCTTGCCGAT
GGTCGTTAAACCCGCCCGCCCGGCTGATTCCACAGCGGAGGTCCACCTCA
CCATCACCTACTGCCCGAATACCCAGAAGAAGGATATACCCGATGGCGAA
GATACGGATTGCCTGATGTGCGCAACGTTTGCAACGTTCGGATTATCTCG
AGGGTCGTGCTCGATATCGTAA
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