prot_Ecto-sp6_S_contig104.948.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp6_S_contig104.948.1
Unique Nameprot_Ecto-sp6_S_contig104.948.1
Typepolypeptide
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length272
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig104.948.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 255..271
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 28..232
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 233..254
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..12
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 23..27
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 13..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..27
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..27
score: 0.714
NoneNo IPR availableTMHMMTMhelixcoord: 233..255
NoneNo IPR availableTMHMMTMhelixcoord: 13..30

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig104contigEcto-sp6_S_contig104:282744..284525 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig104.948.1mRNA_Ecto-sp6_S_contig104.948.1Ectocarpus species6 EcLAC_371mRNAEcto-sp6_S_contig104 276158..285482 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp6_S_contig104.948.1 ID=prot_Ecto-sp6_S_contig104.948.1|Name=mRNA_Ecto-sp6_S_contig104.948.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=272bp
MMISVARCAAPRVVLLAAAAVVYPALGINVPCDSGTRVYSLSAFHGSWLD
GIEIVCTGGGQEYIPPDYNLEVGDGQGGVPSDAICAGTAGVESIEWFQVS
VAGVLPYSTTVVTNATISCADGSAQTVADDNTFSGAIAQATASCDEGEYV
YGLSYEIDEAGSTTSYDGSFGYAVTSIGVLCRSTALDEICTADMCSGGVA
LKEELPDYCEAATCSEAECCDTSDDGDDVETEIIAGVVSSVAAAMIIGAG
AWAWQKCRVREKEGRVRENAR*
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