mRNA_Ecto-sp6_S_contig103.889.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig103.889.1
Unique NamemRNA_Ecto-sp6_S_contig103.889.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig103.889.1 vs. uniprot
Match: D7FXV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXV7_ECTSI)

HSP 1 Score: 478 bits (1231), Expect = 1.560e-170
Identity = 239/242 (98.76%), Postives = 241/242 (99.59%), Query Frame = 1 
Query:    1 MARAVVAAVVEYLIAHIGANEYAVFVTAGNHTSSSSFDLATYNTLSDTPNPGGDGVLSATMRTSNSAAISISASEARGASNLSYRLYWSNLSTWTGAEDEWEVPSGCVIPTGGLSLLENPNCLFSSACGMYRASEGMSDWVTLPNDTDEYSFEAPVSRGAQYIFNVAMRDSNNITSAYRASNMTFTFTNYQQCVADQGCQSQVKIPSGPTFNANWNVARWNHLVESVSTTLTRLFVPSLCDS 726
            MARAV+AAV EYLIAHIGANEYAVFVTAGNHTSSSSFDLATYNTLSDTPNPGGDGVLSATMRTSNSAAISISASEARGASNLSYRLYWSNLSTWTGAEDEWEVPSGCVIPTGGLSLLENPNCLFSSACGMYRASEGMSDWVTLPNDTDEYSFEAPVSRGAQYIFNVAMRDSNNITSAYRASNMTFTFTNYQQCVADQGCQSQVKIPSGPTFNANWNVARWNHLVESVSTTLTRLFVPSLC+S
Sbjct:    1 MARAVLAAVAEYLIAHIGANEYAVFVTAGNHTSSSSFDLATYNTLSDTPNPGGDGVLSATMRTSNSAAISISASEARGASNLSYRLYWSNLSTWTGAEDEWEVPSGCVIPTGGLSLLENPNCLFSSACGMYRASEGMSDWVTLPNDTDEYSFEAPVSRGAQYIFNVAMRDSNNITSAYRASNMTFTFTNYQQCVADQGCQSQVKIPSGPTFNANWNVARWNHLVESVSTTLTRLFVPSLCNS 242
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BLAST of mRNA_Ecto-sp6_S_contig103.889.1 vs. uniprot
Match: A0A6H5KYM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYM0_9PHAE)

HSP 1 Score: 353 bits (907), Expect = 2.350e-121
Identity = 178/198 (89.90%), Postives = 185/198 (93.43%), Query Frame = 1 
Query:   49 IGANEYAVFVTAGNHTSSSSFDLATYNTLSDTPNPGGDGVLSATMRTSNSAAISISASEARGASNLSYRLYWSNLSTWTGAEDEWEVPSGCVIPTGGLSLLENPNCLFSSACGMYRASEGMSDWVTLPNDTDEYSFEAPVSRGAQYIFNVAMRDSNNITSAYRASNMTFTFTNYQQCVADQGCQSQVKIPSGPTFNAN 642
            + ANE+AVFVTAGN TSSSSFDLATYN LSDTPNPGGDGVLSATM TSNSAAISISAS+  GA NLSYRLYWS+LSTWTGAE EWEV SGCVIPTGGLSLLENP+CLFSSACGMYRASEGM DWVTLPNDT EYSFEAPVSRGAQYIFNVAM DSN++TSAYRASNMTFTFTN QQCVADQGCQSQVKIPSGPTFNAN
Sbjct:   39 VRANEHAVFVTAGNLTSSSSFDLATYNALSDTPNPGGDGVLSATMPTSNSAAISISASDTSGARNLSYRLYWSDLSTWTGAEYEWEVTSGCVIPTGGLSLLENPSCLFSSACGMYRASEGMFDWVTLPNDTGEYSFEAPVSRGAQYIFNVAMWDSNDVTSAYRASNMTFTFTNSQQCVADQGCQSQVKIPSGPTFNAN 236
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BLAST of mRNA_Ecto-sp6_S_contig103.889.1 vs. uniprot
Match: D8LAS5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAS5_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 2.060e-17
Identity = 54/131 (41.22%), Postives = 68/131 (51.91%), Query Frame = 1 
Query:  232 GASNLSYRLYWSNL-STWTGAEDEWEVPSGCVIPTGGLSLLENPNCLFSSACGMYRASEGMSDWVTLPNDTDEYSFEAPVSRGAQYIFNVAMRDSNNITSAYRASNMTFTFTNYQQCVADQGCQSQVKIPS 621
            GA ++ Y LYWS L  T  GA         C + +   SL ENPNCLF SACG+  A++G +DWV L  +T                    M DS NITS Y  +N++FT T+YQ CVAD  C SQ+   S
Sbjct:   19 GADDVMYSLYWSRLPETDEGA---------CTLASDNTSLRENPNCLFWSACGIGNAADGHTDWVALEANTXXXXXXXXXXXXXXXXX-XXMVDSRNITSVYSGTNVSFTSTDYQDCVADPDCTSQLNEDS 139
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig103.889.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FXV7_ECTSI1.560e-17098.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KYM0_9PHAE2.350e-12189.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LAS5_ECTSI2.060e-1741.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig103contigEcto-sp6_S_contig103:109779..112962 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size729
Hectar predicted targeting categoryother localisation
Exons4
Cds size729
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348740.1705787-CDS-Ecto-sp6_S_contig103:109778..1100481682348740.1705787-CDS-Ecto-sp6_S_contig103:109778..110048Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig103 109779..110048 -
1682348740.1782572-CDS-Ecto-sp6_S_contig103:111230..1114641682348740.1782572-CDS-Ecto-sp6_S_contig103:111230..111464Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig103 111231..111464 -
1682348740.1854722-CDS-Ecto-sp6_S_contig103:111812..1119831682348740.1854722-CDS-Ecto-sp6_S_contig103:111812..111983Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig103 111813..111983 -
1682348740.1926334-CDS-Ecto-sp6_S_contig103:112908..1129621682348740.1926334-CDS-Ecto-sp6_S_contig103:112908..112962Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig103 112909..112962 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig103.889.1prot_Ecto-sp6_S_contig103.889.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig103 109779..112962 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig103.889.1

>prot_Ecto-sp6_S_contig103.889.1 ID=prot_Ecto-sp6_S_contig103.889.1|Name=mRNA_Ecto-sp6_S_contig103.889.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=243bp
MARAVVAAVVEYLIAHIGANEYAVFVTAGNHTSSSSFDLATYNTLSDTPN
PGGDGVLSATMRTSNSAAISISASEARGASNLSYRLYWSNLSTWTGAEDE
WEVPSGCVIPTGGLSLLENPNCLFSSACGMYRASEGMSDWVTLPNDTDEY
SFEAPVSRGAQYIFNVAMRDSNNITSAYRASNMTFTFTNYQQCVADQGCQ
SQVKIPSGPTFNANWNVARWNHLVESVSTTLTRLFVPSLCDS*
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mRNA from alignment at Ecto-sp6_S_contig103:109779..112962-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig103.889.1 ID=mRNA_Ecto-sp6_S_contig103.889.1|Name=mRNA_Ecto-sp6_S_contig103.889.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3184bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:109779..112962- (Ectocarpus species6 EcLAC_371)
ATGGCGCGGGCGGTGGTAGCCGCCGTGGTGGAGTACCTGATAGCCCACAT
AGGGGTAAGGACTCGGCCGCACGGCGGGGTCAATCTCTATCAGTCAGCGC
GCCAGGTTTCCGGTGCTTTGTATTCTTCGTAGCTGATGGGGCTGAATGTG
TATTCTTGCGAGGAGATGCTTCGCCCGAAGAGATGGTGTGGGCTTTGATA
GACCTTGCTGCCTGGTGTTTGGAGTAGCATACGGGATGAGGCTAGTGATG
CGCAGTCGGAATACAGGGTATGGCCAGGCTCTGCGGGCATTAATAGAGGT
AGTCAAGAAGTCGGGGCGTGAACCAATAGAGTTTGCATTGCACTCCCTTC
CAACCTGGGCTCCTTTCCAACCTGGGGAGGTTGGGAACGAGTAGTCCAGA
GGGCAGGGAGGTGGACGTAAGATGCGTACGAGCCATACACAGATAAAAAT
GTGGAGGATTCGCGACGGGTGTCGAGCATATTAGGCGATAAGAAATCGGA
GCGTCGAGACAGCCGGGGGAGAACACGGTGTGGGTTAGCAGGAAGAAGAG
ACGGTGTTCCACAGTAGTGAGCCCACCATGACGACCTCGAATTGGGTAGA
GTGAATGATATGTAGAGTGACTTGGTTGTCGGAGAGGTTCCGTACAGCAG
AAGGAGTTCCCCACACCGGTGTAAAGAGAAACCCCGGGTTGTTTTCTTAG
GGAAGAGAGAGAGAGAGACAGTAGTACTGAGGGACAGAGACACGGTAGGA
CAGGCGCAGAGGGAGTTTGCAGGGAACGTGTTCTGTCTGTGTGGCTTCTC
TCTCTTCCCCGCGTCTGAAGAGAAAACAAGAAAGCAAAAATGGCTATTCG
AAAGAAAAACAATAAAGAGATCGTGAACATCGAATATTTGCCCACGTCCA
CAAGCGAAGCTACAGCCGTGATTGCGCGCTTGTTTTCACGCGAGCTTCTT
GCGCACCCGCCGGCAAACAACAACGTCAGGCAAACGAGTACGCAGTATTC
GTCACGGCTGGAAATCACACCAGTTCTTCCAGCTTCGATCTGGCGACATA
CAACACGCTCAGCGATACACCAAACCCGGGCGGCGACGGCGTCCTTTCGG
CCACAATGCGTACCTCGAATTCCGCTGCAATCTCCATTAGCGCTTCGGAG
GTAAAAATAATCGGTCGTCCACGCGGCCCGTGTCGCCCGTTTCCTAGTTA
AACATATGTAGACTAGGCTACATACATGTAGTCCACCCTCAGTTGCCAAA
TATTCTTCCAACCACCGTCTACCTGCTTGTGGCGCACGGAGGTCAGAGCG
ACGGCAAGTTTCAATTCAATGTTCAGCACGAAAAAAAATGGCGGAGTCTG
GTAAGTAGCGACGATAAGTGGGGGCTTCCACGCGGCATGGCCGCCAACCA
CGACGACAATCAATCCGAATTTTATTTGTTTTTTGCGCCGTTCTTTGCTG
ACTTCCCAAACGGTTGGGGATCCGCCCGTTCGCCGCAATCAATGAAAGGC
GAGAGGGGCTAGCAACTTGAGCTACCGCCTATACTGGAGTAACCTGTCCA
CCTGGACAGGGGCAGAGGATGAATGGGAGGTACCCTCCGGTTGCGTGATC
CCTACGGGTGGCCTCTCCTTGTTGGAGAATCCGAACTGCCTGTTCTCGTC
CGCGTGCGGGATGTACCGGGCGTCGGAAGGCATGTCTGACTGGGTGACCC
TGCCCAACGACACCGACGAGTACAGCTTCGAGGTGAGTGTACACAGTTAG
CGCCCGCGTTTTGAATCGTCAATTTGTGGGTCGAGACTCGATTTCTTACT
TCGTCACGACCGTCGAGCATAGTGTAGGGCGTTATATCGAGTTTAGTGTA
GGATTCACGGCTGAGGTGTGTTTCTTTGTCGGTTATTCTAATTTATCGCC
AACATGTGAGCCATTGCTTTTTATATAGGTCTGTTTCTTGATCGCGGGTG
CTACCTGTAGTGGTGTTGGCTTTCTTGATGGAGGCGATGCTCTTGTTTGT
TTGTTTCGCCGTCTATCTCGTTCCTATGCATTTCAGTGTTTTCGTGCCAT
TGATCTGGGCAGAAGGTTCTCTTCGCACTTCGCCGTCGAAACCCTTCGCA
CTGATGCTCTCCAAACACAAAGGCCAATCTCTTGGGGATGATTTTAATGC
CTATTTCGGATGAGTTGGGAGGATGGAGGGTGGCTGGCCCTGTCTGGCAC
CGACATAGTTATCACAATATTTGGATGATCATGGCCCTGTGCATGCTCAT
CACCAAACTATTCGTCTGCTGGTCGGTTCCCCACATGTCTGGTGTTGATA
TCTTTGGTGCCTCCTTGTGCACTCTGTCCTGACGGTTTGCTCCTCCATGG
CCCCTCAACATCCAGCGGTTATCGTCAGAGTTGACTTCAACACAGAAAGG
AGCCGTGCACCCTGCATCAGCACATATCGAACGAAATGTTGAAACACCCA
AAAAAAACAAGTGGACACCTTCATCATGATTCACCGTGTGCGGGAGATAG
TGTTCAGATGATCCCTTCGGCTTTTCTTTGTAGTTGTTCTCGTCGTTGTG
GTCGTCTTCGTTATTGTTGTCGTTGTTGTCAATATTGGTTTAGCTCGACG
ACGTCGTCGTCGTCGTCGTCATAGTTGTTGTTGACCTGTCTGCCGGTACA
GATCGGCATCCAACGCGCCACGTGCCTCAAACGAAATAGAAGTAGTACCA
ACAATGGAGATAACCAACACAAGTCATCGAATGCCACGAGGGCGATGTTC
TGCCGACCAATTACTGTAGATCAGTTCCGGCATTCTCGATACAGCATTGA
TGGTTGAAGGAGATGTAAAATACTTCTCGTATTCAGTTCTCTACAGGAGC
ACAATCGTACGAAGTTACAGTACAGTACACAAACATGACAAATCACACCG
CCAATTTTTCGCAGGCGCCGGTCTCGCGTGGGGCCCAGTACATCTTCAAC
GTCGCCATGCGGGACTCGAACAACATCACGTCGGCCTACCGTGCGTCGAA
CATGACATTCACCTTCACCAATTATCAACAGTGCGTTGCTGACCAAGGCT
GCCAGTCTCAGGTGAAGATACCCTCTGGACCGACCTTCAACGCAAATTGG
AACGTGGCGCGTTGGAACCACCTCGTCGAGAGCGTTTCGACAACCCTTAC
TAGACTATTCGTACCGTCATTGTGCGACTCCTAA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig103:109779..112962-

>mRNA_Ecto-sp6_S_contig103.889.1 ID=mRNA_Ecto-sp6_S_contig103.889.1|Name=mRNA_Ecto-sp6_S_contig103.889.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=729bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:109779..112962- (Ectocarpus species6 EcLAC_371)
ATGGCGCGGGCGGTGGTAGCCGCCGTGGTGGAGTACCTGATAGCCCACAT
AGGGGCAAACGAGTACGCAGTATTCGTCACGGCTGGAAATCACACCAGTT
CTTCCAGCTTCGATCTGGCGACATACAACACGCTCAGCGATACACCAAAC
CCGGGCGGCGACGGCGTCCTTTCGGCCACAATGCGTACCTCGAATTCCGC
TGCAATCTCCATTAGCGCTTCGGAGGCGAGAGGGGCTAGCAACTTGAGCT
ACCGCCTATACTGGAGTAACCTGTCCACCTGGACAGGGGCAGAGGATGAA
TGGGAGGTACCCTCCGGTTGCGTGATCCCTACGGGTGGCCTCTCCTTGTT
GGAGAATCCGAACTGCCTGTTCTCGTCCGCGTGCGGGATGTACCGGGCGT
CGGAAGGCATGTCTGACTGGGTGACCCTGCCCAACGACACCGACGAGTAC
AGCTTCGAGGCGCCGGTCTCGCGTGGGGCCCAGTACATCTTCAACGTCGC
CATGCGGGACTCGAACAACATCACGTCGGCCTACCGTGCGTCGAACATGA
CATTCACCTTCACCAATTATCAACAGTGCGTTGCTGACCAAGGCTGCCAG
TCTCAGGTGAAGATACCCTCTGGACCGACCTTCAACGCAAATTGGAACGT
GGCGCGTTGGAACCACCTCGTCGAGAGCGTTTCGACAACCCTTACTAGAC
TATTCGTACCGTCATTGTGCGACTCCTAA
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