Homology
BLAST of mRNA_Ecto-sp6_S_contig103.884.1 vs. uniprot
Match:
D7FXV8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXV8_ECTSI)
HSP 1 Score: 80.1 bits (196), Expect = 4.120e-16
Identity = 41/45 (91.11%), Postives = 44/45 (97.78%), Query Frame = 1
Query: 55 ETETFTPAPVAIISPRETISPLTASPFPSPSFTESTPPFTLSPLP 189
ETETFTPAP+AIISPRET+SPLT +PFPSPSFTESTPPFTLSPLP
Sbjct: 296 ETETFTPAPIAIISPRETVSPLTTNPFPSPSFTESTPPFTLSPLP 340
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig103.884.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 4.12e-16 / Id = 91.11 Sequence D7FXV8_ECTSI
Match Name E-value Identity Description
D7FXV8_ECTSI 4.120e-16 91.11 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 0 Start 0 Model size 192 Hectar predicted targeting category other localisation Exons 1 Cds size 189
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682348739.9951587-CDS-Ecto-sp6_S_contig103:81176..81365 1682348739.9951587-CDS-Ecto-sp6_S_contig103:81176..81365 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig103 81177..81365 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig103.884.1
>prot_Ecto-sp6_S_contig103.884.1 ID=prot_Ecto-sp6_S_contig103.884.1|Name=mRNA_Ecto-sp6_S_contig103.884.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=63bp
SGSRAVTVTPAPTVFSTAETETFTPAPVAIISPRETISPLTASPFPSPSF back to top mRNA from alignment at Ecto-sp6_S_contig103:81177..81366+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig103.884.1 ID=mRNA_Ecto-sp6_S_contig103.884.1|Name=mRNA_Ecto-sp6_S_contig103.884.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=190bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:81177..81366+ (Ectocarpus species6 EcLAC_371)TCTGGGAGTCGAGCTGTAACGGTTACTCCCGCTCCCACCGTCTTCTCCAC
TGCAGAAACTGAAACCTTCACTCCCGCTCCCGTTGCCATCATCTCCCCTC
GAGAAACTATCTCCCCTCTCACCGCCAGTCCTTTTCCTTCACCTTCCTTC
ACCGAGTCTACTCCCCCTTTCACCCTGTCCCCGCTTCCT back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig103:81177..81366+
>mRNA_Ecto-sp6_S_contig103.884.1 ID=mRNA_Ecto-sp6_S_contig103.884.1|Name=mRNA_Ecto-sp6_S_contig103.884.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=189bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:81177..81366+ (Ectocarpus species6 EcLAC_371) back to top