mRNA_Ecto-sp6_S_contig103.882.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig103.882.1
Unique NamemRNA_Ecto-sp6_S_contig103.882.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig103.882.1 vs. uniprot
Match: A0A6H5K438_9PHAE (Herpes_ori_bp domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K438_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 2.120e-45
Identity = 95/181 (52.49%), Postives = 118/181 (65.19%), Query Frame = 1 
Query:    1 MVILNEKRTTLNLAVCRETNNRYLNKNMEKLQDLIYSADRVVFADADQHVDGAVDSCYPVVFKDEVIHPINHTAGGQELHVKWADDVVFVRKLQQDLRDGRKIEVCCGSAQELRTLEKVALAIVGKEEVGIYYANSPNQAEIIGVYAHWSK*KLIGVTCKIAVSV---GSKDGVHFPVEER 534
            M+I++E R+TLN A                   LIY ADRV+ ADAD +VDGAV   Y  VFK+E IH I+H  GGQELHV++ D   FV+ + +DLR G++I VCCGSA EL+T+EK+AL IV KE++GIYYANSP QAEI  V AHW K KLIG+T  I VSV   G  D V+    +R
Sbjct:  468 MIIMDELRSTLNSA-------------------LIYQADRVICADADLYVDGAVQCFYDTVFKNEEIHHIDHKGGGQELHVRFTDSAAFVKMILKDLRAGKRIGVCCGSALELKTIEKLALDIVHKEKLGIYYANSPQQAEIADVSAHWPKYKLIGLTSTITVSVDYTGPIDRVYISPSQR 629
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BLAST of mRNA_Ecto-sp6_S_contig103.882.1 vs. uniprot
Match: A0A6H5J8T6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8T6_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 4.470e-12
Identity = 33/57 (57.89%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:  244 KWADDVVFVRKLQQDLRDGRKIEVCCGSAQELRTLEKVALAIVGKEEVGIYYANSPN 414
            ++  D    RK+QQ+    ++I +C GSAQEL+TLEK+ALAIVG+E+VGIYY NSPN
Sbjct:    3 RFKHDAAIARKIQQE---NKQIGMCRGSAQELKTLEKLALAIVGEEKVGIYYGNSPN 56
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig103.882.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K438_9PHAE2.120e-4552.49Herpes_ori_bp domain-containing protein n=1 Tax=Ec... [more]
A0A6H5J8T6_9PHAE4.470e-1257.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig103contigEcto-sp6_S_contig103:35798..36406 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size609
Hectar predicted targeting categoryother localisation
Exons1
Cds size456
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348739.9035447-CDS-Ecto-sp6_S_contig103:35797..362531682348739.9035447-CDS-Ecto-sp6_S_contig103:35797..36253Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig103 35798..36253 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348739.9111698-UTR-Ecto-sp6_S_contig103:36253..364061682348739.9111698-UTR-Ecto-sp6_S_contig103:36253..36406Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig103 36254..36406 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig103.882.1prot_Ecto-sp6_S_contig103.882.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig103 35798..36253 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig103.882.1

>prot_Ecto-sp6_S_contig103.882.1 ID=prot_Ecto-sp6_S_contig103.882.1|Name=mRNA_Ecto-sp6_S_contig103.882.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=152bp
MVILNEKRTTLNLAVCRETNNRYLNKNMEKLQDLIYSADRVVFADADQHV
DGAVDSCYPVVFKDEVIHPINHTAGGQELHVKWADDVVFVRKLQQDLRDG
RKIEVCCGSAQELRTLEKVALAIVGKEEVGIYYANSPNQAEIIGVYAHWS
K*
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mRNA from alignment at Ecto-sp6_S_contig103:35798..36406+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig103.882.1 ID=mRNA_Ecto-sp6_S_contig103.882.1|Name=mRNA_Ecto-sp6_S_contig103.882.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=609bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:35798..36406+ (Ectocarpus species6 EcLAC_371)
ATGGTCATCCTGAACGAGAAACGAACGACGCTGAACTTGGCCGTCTGCCG
CGAAACGAACAACAGGTACTTGAACAAGAACATGGAGAAACTTCAAGATC
TGATCTACTCCGCAGACCGCGTGGTTTTCGCGGATGCCGACCAACACGTC
GACGGAGCAGTCGACAGTTGCTACCCGGTCGTGTTCAAGGACGAGGTGAT
CCACCCGATCAATCACACGGCGGGAGGACAGGAGCTCCACGTGAAGTGGG
CAGACGACGTAGTGTTTGTACGCAAGCTTCAACAAGATTTGCGCGACGGG
AGAAAGATCGAGGTGTGCTGCGGATCGGCTCAGGAGCTCAGAACTCTCGA
GAAGGTTGCTCTGGCAATCGTTGGGAAGGAAGAGGTAGGGATATACTACG
CCAACTCTCCGAACCAAGCGGAGATAATCGGCGTGTACGCTCACTGGTCG
AAGTAGAAACTCATCGGCGTCACATGCAAGATTGCAGTGAGCGTCGGCTC
TAAGGACGGTGTACATTTCCCCGTCGAGGAGAGGATGCGAGCAGCGAGAG
AGGACGCCTCGGGGGTGATAACCACAAGAATCCACCTTCAGTCGACTGCA
GGGAGTGTC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig103:35798..36406+

>mRNA_Ecto-sp6_S_contig103.882.1 ID=mRNA_Ecto-sp6_S_contig103.882.1|Name=mRNA_Ecto-sp6_S_contig103.882.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=456bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:35798..36406+ (Ectocarpus species6 EcLAC_371)
ATGGTCATCCTGAACGAGAAACGAACGACGCTGAACTTGGCCGTCTGCCG
CGAAACGAACAACAGGTACTTGAACAAGAACATGGAGAAACTTCAAGATC
TGATCTACTCCGCAGACCGCGTGGTTTTCGCGGATGCCGACCAACACGTC
GACGGAGCAGTCGACAGTTGCTACCCGGTCGTGTTCAAGGACGAGGTGAT
CCACCCGATCAATCACACGGCGGGAGGACAGGAGCTCCACGTGAAGTGGG
CAGACGACGTAGTGTTTGTACGCAAGCTTCAACAAGATTTGCGCGACGGG
AGAAAGATCGAGGTGTGCTGCGGATCGGCTCAGGAGCTCAGAACTCTCGA
GAAGGTTGCTCTGGCAATCGTTGGGAAGGAAGAGGTAGGGATATACTACG
CCAACTCTCCGAACCAAGCGGAGATAATCGGCGTGTACGCTCACTGGTCG
AAGTAG
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