mRNA_Ecto-sp6_S_contig103.878.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig103.878.1
Unique NamemRNA_Ecto-sp6_S_contig103.878.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig103.878.1 vs. uniprot
Match: D7FMR2_ECTSI (Ion_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMR2_ECTSI)

HSP 1 Score: 461 bits (1187), Expect = 1.520e-147
Identity = 243/244 (99.59%), Postives = 244/244 (100.00%), Query Frame = 1
Query:    1 MLAFIFRIIAYIADFAQAATTILGNTLIGQAFFIARFSLAAIAPLLFARVLSLAQVDNTFGPMTQIIWNMLFHLARFSVFMLVVMVSFALAFHSLYADPNCSEGDELFESYRTLRESLLDMFRSMLGDANFDRFEADRNLTCTGPSWEFDAGITLLTIYIVLQAILMLNLLIAVLSTVHDTVSENAITEFHLARSQFIQASAASVEGGRLPPPLNLLMAAILIVVDVFGEICHWVGKSLRFLSG 732
            MLAFIFRIIAYIADFAQAATTILGNTLIGQAFFIARFSLAAIAPLLFARVLSLAQVDNTFGPMTQIIWNMLFHLARFSVFMLVVMVSFALAFHSLY+DPNCSEGDELFESYRTLRESLLDMFRSMLGDANFDRFEADRNLTCTGPSWEFDAGITLLTIYIVLQAILMLNLLIAVLSTVHDTVSENAITEFHLARSQFIQASAASVEGGRLPPPLNLLMAAILIVVDVFGEICHWVGKSLRFLSG
Sbjct: 1420 MLAFIFRIIAYIADFAQAATTILGNTLIGQAFFIARFSLAAIAPLLFARVLSLAQVDNTFGPMTQIIWNMLFHLARFSVFMLVVMVSFALAFHSLYSDPNCSEGDELFESYRTLRESLLDMFRSMLGDANFDRFEADRNLTCTGPSWEFDAGITLLTIYIVLQAILMLNLLIAVLSTVHDTVSENAITEFHLARSQFIQASAASVEGGRLPPPLNLLMAAILIVVDVFGEICHWVGKSLRFLSG 1663          
BLAST of mRNA_Ecto-sp6_S_contig103.878.1 vs. uniprot
Match: D8LH97_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH97_ECTSI)

HSP 1 Score: 169 bits (428), Expect = 2.310e-44
Identity = 99/221 (44.80%), Postives = 143/221 (64.71%), Query Frame = 1
Query:   97 FIARFSLAAIAPLLFARVLSLAQVDNTFGPMTQIIWNMLFHLARFSVFMLVVMVSFALAFHSLY------ADPNCSEGDE----LFESYRTLRESLLDMFRSMLGDANFDRFE-ADRNLTCTGPSWEFDAGITLLTIYIVLQAILMLNLLIAVLSTVHDTVSENAITEFHLARSQFIQASAASVEGGRLPPPLNLLMAAILIVVDVFGEICHWV--GKSLR 720
            F A+F  A  APLLF+R+L L+Q+D T GPMTQ+IW M+ H+ RFS F+ +VM+SFALAFH+++      ++P C+  D+    L +++ T  +SLL +F S LG   FD F+ A  +  C  P     AGI+++ +Y +  ++++LNLLIAVLST HD V  NA  EFHLAR++ +  SA SV   R PPPLNL+     +++DVF EI  ++   +SLR
Sbjct: 1014 FYAQFFYALSAPLLFSRLLVLSQIDATLGPMTQVIWRMMSHMLRFSAFIAMVMLSFALAFHAVFHTCGEHSEPQCTLDDDDAFPLRDAFGTFGDSLLTVFSSALGGPEFDLFDDAGSDCRCNLPRGARSAGISMMVVYTITMSVVLLNLLIAVLSTAHDEVYVNAEKEFHLARARLVVQSARSVAHRRPPPPLNLVKLGFGVLIDVFTEIWRFILWARSLR 1234          
BLAST of mRNA_Ecto-sp6_S_contig103.878.1 vs. uniprot
Match: A0A6H5JB40_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB40_9PHAE)

HSP 1 Score: 166 bits (421), Expect = 2.080e-43
Identity = 106/240 (44.17%), Postives = 145/240 (60.42%), Query Frame = 1
Query:    4 LAFIFRIIAYIADFAQAATTILGNTLIGQAFFIARFSLAAIAPLLFARVLSLAQVDNTFGPMTQIIWNMLFHLARFSVFMLVVMVSFALAFHSLYADPNCSEGDELFESYRTLRESLLDMFRSMLGDANFDRFEADRNLTCT---GPSWEFDAGITLLTIYIVLQAILMLNLLIAVLSTVHDTVSENAITEFHLARSQFIQASAASVEGGRLPPPLNLLMAAILIVVDVFGEICHWVGKS 714
            LAFIFR++  I +F   A         G  FF+A+F LAA APLLFAR+L L+Q+D+T GPM QIIW ML    RF VF++VVM  FALAF++++   +C  G +L ESY +   + L +F++ LG+  F+ F+ D    C     P    DAG  LL  Y+V+ A++MLNLLIAVLST H  V  N   EFHLAR++ I  SA +V   R+PPP NL+   +  ++D   E+  W  + 
Sbjct: 1121 LAFIFRLLG-IREFGGPADP-------GDYFFVAQFFLAASAPLLFARLLRLSQIDSTLGPMIQIIWRMLSQTLRFGVFIVVVMAGFALAFNAVFG--SCDAGSDLDESYGSFGTAFLTVFKAPLGEFKFEDFD-DVGGQCPYNPSPGRASDAGTFLLVAYLVVLAVVMLNLLIAVLSTAHGEVYANGEKEFHLARTRLILQSARAVAHRRIPPPFNLVQLVVGFLLDGVSELAWWAVRG 1349          
BLAST of mRNA_Ecto-sp6_S_contig103.878.1 vs. uniprot
Match: A0A6H5JTT3_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT3_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 2.970e-42
Identity = 96/224 (42.86%), Postives = 141/224 (62.95%), Query Frame = 1
Query:   97 FIARFSLAAIAPLLFARVLSLAQVDNTFGPMTQIIWNMLFHLARFSVFMLVVMVSFALAFHSL------YADPNCSEGDE----LFESYRTLRESLLDMFRSMLGDANFDRFE-ADRNLTCTGPSWEFDAGITLLTIYIVLQAILMLNLLIAVLSTVHDTVSENAITEFHLARSQFIQASAASVEGGRLPPPLNLLMAAILIVVDVFGEICHWV--GKSLRFLS 729
            F A+F  A  APLLF+R+L L+Q+D T GPMTQ+IW M+ H+ RFS F+ +VM+SFALAFH++      Y++P C+  D+    L +++ T  +S + +F S LG    D F+    +  C  P     AGI+++ +Y +  ++++LNLLIAVLST HD V  NA  EFHLAR++ +  SA SV   R PPPLNL+     +++D+F EI  ++   +SLR  S
Sbjct:  382 FYAQFFYALSAPLLFSRLLVLSQIDATLGPMTQVIWRMMSHMLRFSAFIAMVMLSFALAFHAVFHTCGEYSEPQCTLDDDDPFPLRDAFGTFGDSFVTVFSSALGGPEIDLFDDVGSDCRCNLPRGARSAGISMMVVYTITMSVVLLNLLIAVLSTAHDEVYVNAEKEFHLARARLVVQSAQSVAHLRPPPPLNLIKLGFGVLIDLFTEIWRFILWARSLRSRS 605          
BLAST of mRNA_Ecto-sp6_S_contig103.878.1 vs. uniprot
Match: D8LHA0_ECTSI (Transient Receptor Potential Channel. Partial sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHA0_ECTSI)

HSP 1 Score: 154 bits (388), Expect = 5.540e-39
Identity = 99/241 (41.08%), Postives = 141/241 (58.51%), Query Frame = 1
Query:    1 MLAFIFRIIAYIADFAQAATTILGNTLIGQAFFIARFSLAAIAPLLFARVLSLAQVDNTFGPMTQIIWNMLFHLARFSVFMLVVMVSFALAFHSLY------ADPNCSEGDE----LFESYRTLRESLLDMFRSMLGDANFDRFEA-DRNLTCTGPSWEFDAGITLLTIYIVLQAILMLNLLIAVLSTVHDTVSENAITEFHLARSQFIQASAASVEGGRLPPPLNLLMAAILIVVDVFGE 690
            ++ F+FR+IA   DF                 F A+F  AA APLLF+R+L L+Q+D T GPMTQ+IW M+    RFS F+ VVM+SFALAFH+++       DP C+  D+    L +++ T   S + +F + LG  +F+ +EA      C  P    +AGI L+ +Y+V+ A+++LNLLIAVLST H  V +N   EFHLAR++ I  SA  V   R PPPLNL+   +  ++D   E
Sbjct: 1196 LVTFVFRMIALDDDFFL---------------FHAQFFYAASAPLLFSRLLVLSQIDATLGPMTQVIWRMISDTLRFSAFISVVMLSFALAFHAVFHTCGEFEDPTCNTNDDPDFPLRDAFGTFGRSFVTVFSAALGGPDFELYEAAGSECRCKLPDGAQEAGIFLMVVYMVIMAVVLLNLLIAVLSTAHSKVYDNGDKEFHLARAKLIYQSARVVTRRRPPPPLNLVKVVLGTLIDATTE 1421          
BLAST of mRNA_Ecto-sp6_S_contig103.878.1 vs. uniprot
Match: D8LH99_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH99_ECTSI)

HSP 1 Score: 150 bits (380), Expect = 6.410e-38
Identity = 93/220 (42.27%), Postives = 133/220 (60.45%), Query Frame = 1
Query:   97 FIARFSLAAIAPLLFARVLSLAQVDNTFGPMTQIIWNMLFHLARFSVFMLVVMVSFALAFHSL------YADPNCSEGDE----LFESYRTLRESLLDMFRSMLGDANFDRFE-ADRNLTCTGPSWEFDAGITLLTIYIVLQAILMLNLLIAVLSTVHDTVSENAITEFHLARSQFIQASAASVEGGRLPPPLNLLMAAILIVVDVFGEICH---WVGKS 714
            F A+F  A  APLLF+R+L L+Q+D T GPMTQ+IW M+ H  RFS F+ +VM+SFALAFH++      Y++P C+  D+    L +++ T  +S + +F   LG  +F+ F+ A  +  C  P    +AGI LL +Y++   +++LNLLIAVLST H  V  NA  EFH AR++ I  SA  V   R PPPLNL+     I++D   E+     WV + 
Sbjct: 1148 FHAQFFYALSAPLLFSRLLVLSQIDATLGPMTQVIWRMMSHTLRFSAFIAMVMLSFALAFHAVFHTCGEYSEPQCTLDDDDAFPLRDAFGTFGDSFVTVFTYALGGPDFEAFQLAGSDCRCDLPEGARNAGIFLLVVYMITMTVVLLNLLIAVLSTTHGKVYANAEKEFHHARARLIYQSARVVSRSRPPPPLNLIKLVCGILLDAGTEVWRVGVWVTRG 1367          
BLAST of mRNA_Ecto-sp6_S_contig103.878.1 vs. uniprot
Match: A0A6H5K4M1_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4M1_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 3.710e-31
Identity = 86/200 (43.00%), Postives = 115/200 (57.50%), Query Frame = 1
Query:   97 FIARFSLAAIAPLLFARVLSLAQVDNTFGPMTQIIWNMLFHLARFSVFMLVVMVSFALAFHSLY------ADPNCSEGDELFESYRTLRESLLDMFRSMLGDANFDRFEADRNLTCTGPSWEFDAGITLLTIYIVLQAILMLNLLIAVLSTVHDTVSENAITEFHLARSQFIQASAASVEGGRLPPPLNLLMAAILIVVD 678
            F ARF  A  AP LF+R+L L+Q+D T GPMTQ+IW M+ H  RFS F+ +VM+SFALAFH+++       +P C+  D+     R    +  D F ++  D   +  E  RN           AGI LL +Y+V   +++L LLIAVLST H  V +NA  EFH AR+ FI  SA  V   R PPPLNL+     I++D
Sbjct:  485 FHARFFYALSAPRLFSRLLVLSQIDATLGPMTQVIWRMMSHTLRFSAFIAMVMLSFALAFHAVFHTCGEHIEPQCTFDDDDAFPIRDAFGTFGDSFVTVFTDCRCNLPEGARN-----------AGIFLLVVYMVTMTVVLLKLLIAVLSTTHGKVYDNAEKEFHHARACFIYQSARVVSRSRPPPPLNLIKLVCGILLD 673          
BLAST of mRNA_Ecto-sp6_S_contig103.878.1 vs. uniprot
Match: D7FX79_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX79_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 1.600e-29
Identity = 85/181 (46.96%), Postives = 114/181 (62.98%), Query Frame = 1
Query:    4 LAFIFRIIAYIADFAQAATTILGNTLIGQAFFIARFSLAAIAPLLFARVLSLAQVDNTFGPMTQIIWNMLFHLARFSVFMLVVMVSFALAFHSLYADPNCSEGDELFESYRTLRESLLDMFRSMLGDANFDRFEADRNLTCT---GPSWEFDAGITLLTIYIVLQAILMLNLLIAVLSTVH 537
            LAF+FR++  I +F        G T  G  FF+A+F LA  APLLFAR+L L+Q+DNT GPM QIIW ML    RF VF++VVM  FALAF++++   +C  G  L ESY +   +LL +F++ LG+  F+ F+ D    C     P    DAG  LL  Y+++ A++MLNLLIAVLST H
Sbjct: 1119 LAFVFRLLG-IREFG-------GPTDPGDYFFVAQFFLAVSAPLLFARLLRLSQIDNTLGPMIQIIWRMLSQTLRFGVFIVVVMAGFALAFNAVFG--SCDAGSGLDESYGSFGTALLTVFKAPLGEFKFEDFD-DVGGQCPYNPSPGRASDAGTFLLVAYLIVLAVVMLNLLIAVLSTAH 1288          
BLAST of mRNA_Ecto-sp6_S_contig103.878.1 vs. uniprot
Match: D7FNX2_ECTSI (Ion_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNX2_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 2.840e-28
Identity = 73/176 (41.48%), Postives = 106/176 (60.23%), Query Frame = 1
Query:  187 MTQIIWNMLFHLARFSVFMLVVMVSFALAFHSLYADPNCSEGDELFESYRTLRESLLDMFRSMLGDANFDRFEADRNLTCT---GPSWEFDAGITLLTIYIVLQAILMLNLLIAVLSTVHDTVSENAITEFHLARSQFIQASAASVEGGRLPPPLNLLMAAILIVVDVFGEICHWV 705
            M QIIW M+    RF VF++VVM  FALAF +++   +C+    L ES+ +   + L +F + LG+ +F+ F  D    C     P    DAG  LL  Y+V+ A++MLNLL+AVL+T H  V+ N   EFHLAR++ I  SA +V   R+PPPLNL+   + +++D  GE+  WV
Sbjct:    1 MIQIIWRMMSQTLRFGVFIVVVMAGFALAFTTVFG--SCNADSLLGESFGSFGTAFLSVFEAPLGEFSFEDFH-DVGTQCPDNPAPGRASDAGTFLLVAYLVVLAVVMLNLLVAVLTTAHGEVNANGEKEFHLARTRLILQSARAVAHRRIPPPLNLVQLIVGLLLDTVGELAWWV 173          
BLAST of mRNA_Ecto-sp6_S_contig103.878.1 vs. uniprot
Match: D7FLB1_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB1_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 5.050e-19
Identity = 65/186 (34.95%), Postives = 107/186 (57.53%), Query Frame = 1
Query:  127 APLLFARVLSLAQVDNTFGPMTQIIWNMLFHLARFSVFMLVVMVSFALAFHSLYADPNCSEGDELFESYRTLRESLLDMFRSMLGDANFDRFEADRNLTCTGPSWEFDAGIT-LLTIYIVLQAILMLNLLIAVLSTVHDTVSENAITEFHLARSQFIQASAASVEGGRLPPPLNLLMAAILIVVDV 681
            APL+F+R+L  AQ+    GPM Q++++M   L +F V ++VVM+ FA++FH+L+ D +   G            + L +F++MLG+ +F           + P  ++D+  T L  IY+V+ A+++LNLLIAVLST H  V   A  EF +++++ I+     V+   LPPP NL+   + + V V
Sbjct:  906 APLIFSRLLFFAQMLRFHGPMIQVVFSMTAELVKFGVVIIVVMLGFAMSFHALFGDVDTFGG------------TCLTLFKAMLGEVDFFG---------SFPGNQYDSVATALFVIYLVVIAVMLLNLLIAVLSTSHSKVEGKADQEFKVSKARIIEHYRMVVDMCLLPPPFNLVQLILSLPVMV 1070          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig103.878.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMR2_ECTSI1.520e-14799.59Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D8LH97_ECTSI2.310e-4444.80Ankyrin Repeat Transient Receptor Potential Channe... [more]
A0A6H5JB40_9PHAE2.080e-4344.17Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JTT3_9PHAE2.970e-4242.86Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D8LHA0_ECTSI5.540e-3941.08Transient Receptor Potential Channel. Partial sequ... [more]
D8LH99_ECTSI6.410e-3842.27Ankyrin Repeat Transient Receptor Potential Channe... [more]
A0A6H5K4M1_9PHAE3.710e-3143.00Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D7FX79_ECTSI1.600e-2946.96Ankyrin Repeat Transient Receptor Potential Channe... [more]
D7FNX2_ECTSI2.840e-2841.48Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D7FLB1_ECTSI5.050e-1934.95Ankyrin Repeat Transient Receptor Potential Channe... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig103contigEcto-sp6_S_contig103:12307..16430 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score463.0
Seed ortholog evalue8.6e-128
Seed eggNOG ortholog2880.D7FMR2
Model size733
Hectar predicted targeting categorysignal peptide
Exons5
EggNOG free text desc.store-operated calcium channel activity
EggNOG OGsKOG3609@1,KOG3609@2759
Cds size732
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348739.6997457-CDS-Ecto-sp6_S_contig103:12306..123961682348739.6997457-CDS-Ecto-sp6_S_contig103:12306..12396Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig103 12307..12396 +
1682348739.7132854-CDS-Ecto-sp6_S_contig103:13050..131551682348739.7132854-CDS-Ecto-sp6_S_contig103:13050..13155Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig103 13051..13155 +
1682348739.721721-CDS-Ecto-sp6_S_contig103:14109..142961682348739.721721-CDS-Ecto-sp6_S_contig103:14109..14296Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig103 14110..14296 +
1682348739.7290666-CDS-Ecto-sp6_S_contig103:15128..153431682348739.7290666-CDS-Ecto-sp6_S_contig103:15128..15343Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig103 15129..15343 +
1682348739.747398-CDS-Ecto-sp6_S_contig103:16295..164301682348739.747398-CDS-Ecto-sp6_S_contig103:16295..16430Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig103 16296..16430 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig103.878.1prot_Ecto-sp6_S_contig103.878.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig103 12307..16430 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig103.878.1

>prot_Ecto-sp6_S_contig103.878.1 ID=prot_Ecto-sp6_S_contig103.878.1|Name=mRNA_Ecto-sp6_S_contig103.878.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=244bp
MLAFIFRIIAYIADFAQAATTILGNTLIGQAFFIARFSLAAIAPLLFARV
LSLAQVDNTFGPMTQIIWNMLFHLARFSVFMLVVMVSFALAFHSLYADPN
CSEGDELFESYRTLRESLLDMFRSMLGDANFDRFEADRNLTCTGPSWEFD
AGITLLTIYIVLQAILMLNLLIAVLSTVHDTVSENAITEFHLARSQFIQA
SAASVEGGRLPPPLNLLMAAILIVVDVFGEICHWVGKSLRFLSG
back to top

mRNA from alignment at Ecto-sp6_S_contig103:12307..16430+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig103.878.1 ID=mRNA_Ecto-sp6_S_contig103.878.1|Name=mRNA_Ecto-sp6_S_contig103.878.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4124bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:12307..16430+ (Ectocarpus species6 EcLAC_371)
ATGTTGGCGTTCATCTTCCGTATTATCGCGTACATCGCGGACTTCGCCCA GGCTGCCACCACCATTCTTGGCAACACATTGATAGGACAGGCAAGCATCA AAGCGCATGATTTGCCCCGCGCAGCACCTACGCTACCGTGCGCAGAGCTA TTCAGGCAGCCGCTAGGGTTCTTGCGATGGCCTGATATGAACAGCGCAAC TGCCTCCCTTGCCATCAATAACGACGTAGACATACGGCACCACCATGTAC CGACTATCACCTGCCGCAGCCACAGACGTTCTGTAGTACTGGTTCAAATA CGTGGTGTCGCGCCGGCAATGTACGTGACCCCATGCGGGATTTCGATCCC AGCGTTGTAGGGATGGGCGGGCCTGTCGTCGAAAGACTAGACTACGGCTG GGGCTGGCAATATGTACCCCTCGCGTTGAAGAGATGAAAGAGCCTAAACG AGATGCGCAGATTAGGGACACTGATCTATTTCAACCTACAGGAACAACAC CCTGACACATGAGTACCCCGCTCCTTCTCACCCAGTAGCCTTTGCGTGTA GAAAGACAACGTTTTGCGGCAGAGAGAAAAGGTTTGTGGCACGCAGTTTC CTGATTGGGGTAAAGGGTTTTGGTTGGGAGTTATGGTTAAGGTAACGAAG CCAGCTACTTCGAATGTAATTATCTCGGAGACGATCCTTCTCACCCTACT GCATCACCATTGTCCGCCCTTCCGTATTTTTCTTCTCGTCCCAGGCGTTT TTCATAGCTCGGTTCTCTCTCGCCGCTATCGCGCCTCTCCTCTTCGCGAG GGTGCTCTCCCTGGCCCAGGTGGACAACACGTTCGGCCCCATGACGCAGG TGGGGTAACGATAGATCAGAGGCGGTTGGGTGCTTGATCTCGGAGATTCC GGGTGCCAGAGTAGTGATATATTGCGCCCCAAGGTATGTAGTCGCACCAT ATCACATCGGTCGACTCCGTGTCGGTTTCCCGAGGTCTTAGTTGACCGCA AGGCAATCATGATCGATTGCGGTATTGCGCGGCTCTTCCATGTCCTGCTG TTTCTTCAGTGTTTGGCTTCTTTGGGTGTTTGTTTTGTGGCACGTTACAT TGCACAAACTGGTTGCAACACTTTGGAACCTACCTCGGTCGTTCTCGCTC TCCCTCCCCCCCCCCGGTGTTTGCCGTCGGGGTTGGATTTTCGTCGCCTG GCAACGACGTGGTCAAACAAGCCGATCACATCGTGAGCTCGGCAACCAGG TTACCGCTTTTTTTGTTGTCTTGTTTTTGTTGTTGCGGTAACCATATTGG TGGCGGAGTAGATTTCGTTGTCCGGGGTCGAGAACCCTCACTCCGCGCAA CGGGGATGATCGTACCACGTTGTGTTAAAATGGTCAAGCACCGTCGAGGT AGTTGCACAGTGCTTAGAATTGTCTCTGGAAGGGAAAGCACCAGAAGAAA GATTGAAGTCATTCGCAGCTGTCATCCGTACGCAAGGAAGTAAGCAAAGA CGCCGAACACCCTTGGCAGGATGCAGCGCACCCTTCATGCGACTCGCCGA ATACCTCACGGCTCTTCGCGCTTGGTGATGTGAGAGCCTGGTCCGGTGAG AACCCGGCGTGCTCCGTCCCGGTTTTGTAGGGATGCGAGGTCAATGGTCC AACGACAACGGCATGCACGACGATGAGTACAACCCCCCTCTTCCTCTCGC GCTCCCGCGCCAATGGAGAGGCCGATGCTTTCAAGTCTTCTTTGTCGACG AAAATCCTGACTAACGCTGTCCCTCAACTCTCCGGCTTCCTACGAAATCA CAGATAATCTGGAACATGCTGTTTCACCTCGCGCGTTTTTCGGTCTTCAT GTTGGTGGTGATGGTCAGCTTTGCACTGGCGTTCCACTCGCTCTACGCTG ACCCCAACTGCAGTGAGGGGGACGAGTTGTTCGAGTCGTACAGGACGCTG AGAGAGTCCCTTCTCGACATGTTCAGATCTATGCTCGGAGGTATGCACAC CGCCATTGGTGCTTGATAGTTGTCACTGGCAAGCGTGTGTTGTAGTTGTG GTTGTTGTTGTTGTTGGTCGTTCTCGTCACCTGAATGTTTCTACGGGAAG TCTGCTGCAGCGAAGTCGTTCCGTCGATTTGACGATTTATTTCGACACTG ACAACCGCTGTGCGACTCTCCTGCTTGGGCTTGTCTGTCGGCTTTGCCCG ACATTGTCCTTCCGGTGAACGCACCCGTCGTTCGTTGCCCCTCTCTCTTT GTGGTTTATTTCGTAACCCCCACTCCCTTGTATCAGCTGTCGAGCGTTTG AAACACGACCAGAACTCGCAATGTCGAGGCCCATCTCCCTGGTCGGATCC AGCAACTATGTGCATTCGTGGTTCTCGAACAGTGCCTGCTTTTGCCCTTC CGTGCTATTGCTCTTTCGTGTACTACTGCTGTCGTCGTTCTTGCGTCTCC GCACCCTGCCTGGCTCAGACCCAGATCTCGCTCACTTAGCGTCTCGACCG GGGCCAGACCACGGTGTCCACACTAGCCCGCCTCAAGATTGACCAATGCC CAGGAGGAACAGTCAGTGACCCTCAACCTACTTGTCCGACAGAAACAACT GCAGCGGTCCTGGTTGAGCGTTGTCGTACTCCACCTCAGAGTCGACCGTT TCGGGCCATCCGGAGCTAGGCTTGACGTGTACGAGCCGACGTCGATACTT CATGGTTTCTTAATTTGTTAAGTGGATCAGCTACAGAAATCCGAAGCGTT GGCTCTCGGTGCCGTTTGCTGTGTGTGTCGTCGTTCTCGACCGGTTCTTT TGCGCCCTCGTCTTCCTCTCAGACGCCAACTTCGACCGTTTCGAGGCGGA CAGGAACTTGACTTGCACCGGCCCCTCCTGGGAGTTCGACGCTGGCATCA CGCTCCTCACGATATACATTGTCCTGCAAGCGATTTTGATGCTCAATCTG TTGATCGCCGTGCTCAGCACCGTCCACGACACGGTCAGCGAGAACGCCAT CACGGAGTTCCACCTAGCCCGCAGCCAGTTCATTCAGGTGCTTTATCGTG TGTGACGTGTTGATGATGCGATTTGACGTGGGTGAGTTACGAGCTTTTTC GCAGGTCGACCCGAAGAGGTACCGTGATGCCCATTCACGTGGCAACGGAA CAAGGCGTAGCGGGGCCGAGCAAAAACGCAACAAGGCTCGATTGGTTGGA CGCGAGGTCTCAGCAGCTCAGACAGCTTACAGCTCCGCAGGCCGGGTGGT TGTGTTGTCTTGCTGTGTTTCGCGGGGAACCAGAATCGTCCGGATCACGA CCTACTTGCTCGTCCCGGTCGTTCCACGCAATGTGAACTGCCTACCGTAG GCACGGATCCACCGCCTGTTTTCGGTGTCCATTCGCCGTAAAAAAATATG TGCGAACCGCTCCTGTCCAGACACGTGCAAATGATCATGAGGAGAGATGT ATTCAAAACAAGTGGAGATAAACGTTGGGAGCGATCCTTTCTAGACACAA GCAAGCGGACACGAGGAGCGATCCTGTACCGACACGCGCCCCGTCCAGTG GTGACCACGAGGCTCACAAGAGCCCCTTCCCTGGGTCTTGCGTTTTTTTT TCAAGCCAAAGCAGACCGCAGAGCGAGATTCAAATACACACGTTGCCTAA ATTTCAGAGCGATTCCGCCTCTACGGGTTGTTGGTTTCGATCTCCCTCCA TTCTCTGGAAAGAGGGGAGCACGGCCGAATTTGAAGGGCATCGCCCCGTC ATGCGGGTTCGATTGCTCGGAGTAGATGATGGTGGCATAGACAGGGTACA AGGAAGATAGATCCTGGACCTCAAACCGTCAGTAATAAAAAAAAAGTCTT GTTCTCGACATGCACGGCGCTTGTGCTACCGAGATCGCTTTGACGCTGCT TGCAGACGTTCCGGTGTGTTTTCATTCTTCTTTGGTGACTTAGTCGCTCT GTACTTTCTGCGTCGCCCTCCCCCGACCAACCACAACAGGCGAGCGCGGC CTCGGTGGAGGGGGGCCGTCTCCCGCCGCCGCTAAACCTGCTCATGGCGG CCATCCTGATCGTGGTGGATGTCTTCGGTGAGATCTGCCACTGGGTGGGC AAATCTCTTCGTTTTCTTTCCGGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig103:12307..16430+

>mRNA_Ecto-sp6_S_contig103.878.1 ID=mRNA_Ecto-sp6_S_contig103.878.1|Name=mRNA_Ecto-sp6_S_contig103.878.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=732bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:12307..16430+ (Ectocarpus species6 EcLAC_371)
ATGTTGGCGTTCATCTTCCGTATTATCGCGTACATCGCGGACTTCGCCCA
GGCTGCCACCACCATTCTTGGCAACACATTGATAGGACAGGCGTTTTTCA
TAGCTCGGTTCTCTCTCGCCGCTATCGCGCCTCTCCTCTTCGCGAGGGTG
CTCTCCCTGGCCCAGGTGGACAACACGTTCGGCCCCATGACGCAGATAAT
CTGGAACATGCTGTTTCACCTCGCGCGTTTTTCGGTCTTCATGTTGGTGG
TGATGGTCAGCTTTGCACTGGCGTTCCACTCGCTCTACGCTGACCCCAAC
TGCAGTGAGGGGGACGAGTTGTTCGAGTCGTACAGGACGCTGAGAGAGTC
CCTTCTCGACATGTTCAGATCTATGCTCGGAGACGCCAACTTCGACCGTT
TCGAGGCGGACAGGAACTTGACTTGCACCGGCCCCTCCTGGGAGTTCGAC
GCTGGCATCACGCTCCTCACGATATACATTGTCCTGCAAGCGATTTTGAT
GCTCAATCTGTTGATCGCCGTGCTCAGCACCGTCCACGACACGGTCAGCG
AGAACGCCATCACGGAGTTCCACCTAGCCCGCAGCCAGTTCATTCAGGCG
AGCGCGGCCTCGGTGGAGGGGGGCCGTCTCCCGCCGCCGCTAAACCTGCT
CATGGCGGCCATCCTGATCGTGGTGGATGTCTTCGGTGAGATCTGCCACT
GGGTGGGCAAATCTCTTCGTTTTCTTTCCGGC
back to top