mRNA_Ecto-sp6_S_contig103.911.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig103.911.1
Unique NamemRNA_Ecto-sp6_S_contig103.911.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig103.911.1 vs. uniprot
Match: A0A6H5KX51_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX51_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 3.090e-11
Identity = 54/61 (88.52%), Postives = 55/61 (90.16%), Query Frame = -2 
Query:  144 EDKEEWTSVRTGDGXXXXXXXXXXXXXXPSNREFGKRGKSHAGKNNNQAPSSKARAATDAP 326
            EDKEEWTSVR GDGXXXXXXXXXXXXXX SNREFGKR +SHAGKNNNQA SSKAR A DAP
Sbjct:  343 EDKEEWTSVRAGDGXXXXXXXXXXXXXXLSNREFGKRSRSHAGKNNNQATSSKARGA-DAP 402
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BLAST of mRNA_Ecto-sp6_S_contig103.911.1 vs. uniprot
Match: D7G0T3_ECTSI (Retinoblastoma binding protein 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0T3_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 1.880e-7
Identity = 45/52 (86.54%), Postives = 45/52 (86.54%), Query Frame = -2 
Query:  171 EDKEEWTSVRTGDGXXXXXXXXXXXXXXPSNREFGKRGKSHAGKNNNQAPSS 326
            EDKEEWTSVRTGDG XXXXXXXXXXXXXPSNREFGKRGKSHAG  N  A  S
Sbjct:  471 EDKEEWTSVRTGDGGXXXXXXXXXXXXXPSNREFGKRGKSHAGTANADANGS 522
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig103.911.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KX51_9PHAE3.090e-1188.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0T3_ECTSI1.880e-786.54Retinoblastoma binding protein 5 n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig103contigEcto-sp6_S_contig103:305090..305416 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size328
Hectar predicted targeting categoryother localisation
Exons1
Cds size327
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348739.665589-CDS-Ecto-sp6_S_contig103:305089..3054161682348739.665589-CDS-Ecto-sp6_S_contig103:305089..305416Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig103 305090..305416 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig103.911.1prot_Ecto-sp6_S_contig103.911.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig103 305090..305416 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig103.911.1

>prot_Ecto-sp6_S_contig103.911.1 ID=prot_Ecto-sp6_S_contig103.911.1|Name=mRNA_Ecto-sp6_S_contig103.911.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=109bp
ATPVAAAAAAAPPPALLPPPSPRPDPDDPDDAAPPPTLPPPPPRPDPDGA
SVAALAFEEGAWLLFLPAWLLPLLPNSRFDGFFFFAPPPPFFPPPPSPVR
TLVHSSLSS
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mRNA from alignment at Ecto-sp6_S_contig103:305090..305416+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig103.911.1 ID=mRNA_Ecto-sp6_S_contig103.911.1|Name=mRNA_Ecto-sp6_S_contig103.911.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=327bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:305090..305416+ (Ectocarpus species6 EcLAC_371)
GCCACTCCCGTGGCTGCTGCTGCTGCTGCTGCACCACCGCCGGCACTACT
ACCGCCGCCGTCGCCGCGCCCTGATCCTGATGATCCTGATGACGCTGCAC
CACCGCCAACACTACCACCGCCGCCGCCGCGCCCTGATCCTGATGGTGCG
TCGGTCGCCGCCCTAGCCTTTGAGGAAGGGGCTTGGTTGTTGTTCTTGCC
GGCATGGCTCTTGCCCCTCTTGCCGAACTCCCGGTTCGACGGCTTCTTTT
TCTTCGCGCCGCCGCCCCCTTTCTTCCCGCCTCCGCCGTCCCCCGTCCGC
ACGCTCGTCCATTCCTCCTTATCTTCC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig103:305090..305416+

>mRNA_Ecto-sp6_S_contig103.911.1 ID=mRNA_Ecto-sp6_S_contig103.911.1|Name=mRNA_Ecto-sp6_S_contig103.911.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=327bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:305090..305416+ (Ectocarpus species6 EcLAC_371)
GCCACTCCCGTGGCTGCTGCTGCTGCTGCTGCACCACCGCCGGCACTACT
ACCGCCGCCGTCGCCGCGCCCTGATCCTGATGATCCTGATGACGCTGCAC
CACCGCCAACACTACCACCGCCGCCGCCGCGCCCTGATCCTGATGGTGCG
TCGGTCGCCGCCCTAGCCTTTGAGGAAGGGGCTTGGTTGTTGTTCTTGCC
GGCATGGCTCTTGCCCCTCTTGCCGAACTCCCGGTTCGACGGCTTCTTTT
TCTTCGCGCCGCCGCCCCCTTTCTTCCCGCCTCCGCCGTCCCCCGTCCGC
ACGCTCGTCCATTCCTCCTTATCTTCC
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